Email l.a.kelley@imperial.ac.uk Description P0ABC9 Date Thu Jan 5 11:15:11 GMT 2012 Unique Job ID 90a3e5b1521bb13f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hfxA_ 100.0 24 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 2 c2w8aC_ 100.0 34 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 3 c2xq2A_ 98.5 15 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 4 c3dh4A_ 97.9 13 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 5 d2a65a1 97.7 12 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 6 c2jlnA_ 97.5 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 7 c3giaA_ 96.9 12 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 8 c3lrcC_ 94.1 14 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 9 c1u7mB_ 50.3 25 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 10 d1ylxa1 36.8 22 Fold:N domain of copper amine oxidase-like Superfamily:GK1464-like Family:GK1464-like 11 c2hz8A_ 36.3 27 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 12 c1lt1G_ 32.4 33 PDB header:de novo protein Chain: G: PDB Molecule:l13g-df1; PDBTitle: sliding helix induced change of coordination geometry in a2 model di-mn(ii) protein 13 d1z2la1 25.1 9 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 14 d2cv4a1 25.0 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 15 c3gztF_ 22.4 30 PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp 16 c3s0xB_ 22.4 12 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 17 c2kvlA_ 20.6 33 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 18 d2axtm1 19.8 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein M, PsbM Family:PsbM-like 19 d1j5ya2 19.0 12 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 20 d2guka1 17.6 45 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 21 c3g40A_ not modelled 16.7 16 PDB header:transport protein Chain: A: PDB Molecule:na-k-cl cotransporter; PDBTitle: crystal structure of the cytoplasmic domain of a2 prokaryotic cation chloride cotransporter 22 d1kf6d_ not modelled 15.6 18 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 23 c1x59A_ not modelled 15.2 60 PDB header:protein binding Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 histidyl-trna synthetase 24 c3l09B_ not modelled 14.8 19 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 25 c1bmlD_ not modelled 14.8 16 PDB header:blood clotting Chain: D: PDB Molecule:streptokinase; PDBTitle: complex of the catalytic domain of human plasmin and streptokinase 26 d1c4pc_ not modelled 13.7 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase 27 c2qksA_ not modelled 13.5 16 PDB header:metal transport Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera; PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera 28 c3g36D_ not modelled 13.4 13 PDB header:nuclear protein Chain: D: PDB Molecule:protein dpy-30 homolog; PDBTitle: crystal structure of the human dpy-30-like c-terminal domain 29 c3u4gA_ not modelled 13.3 37 PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii 30 d1a7ja_ not modelled 13.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 31 d2f2ha1 not modelled 12.8 25 Fold:Putative glucosidase YicI, C-terminal domain Superfamily:Putative glucosidase YicI, C-terminal domain Family:Putative glucosidase YicI, C-terminal domain 32 d2p6va1 not modelled 12.7 24 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 33 d2vo9a1 not modelled 11.7 12 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:VanY-like 34 c2z9oB_ not modelled 10.6 6 PDB header:replication/dna Chain: B: PDB Molecule:replication initiation protein; PDBTitle: crystal structure of the dimeric form of repe in complex with the repe2 operator dna 35 c1z0zC_ not modelled 10.0 17 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 36 d1s0yb_ not modelled 10.0 36 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 37 d2g3qa1 not modelled 9.7 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 38 c3ej9D_ not modelled 9.7 36 PDB header:hydrolase Chain: D: PDB Molecule:beta-subunit of trans-3-chloroacrylic acid dehalogenase; PDBTitle: structural and mechanistic analysis of trans-3-chloroacrylic acid2 dehalogenase activity 39 c2ksnA_ not modelled 9.5 15 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 40 c3eofB_ not modelled 9.3 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 41 d1z0sa1 not modelled 9.0 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 42 c3kl9F_ not modelled 8.9 12 PDB header:hydrolase Chain: F: PDB Molecule:glutamyl aminopeptidase; PDBTitle: crystal structure of pepa from streptococcus pneumoniae 43 c2dn9A_ not modelled 8.9 9 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 44 c3zqsB_ not modelled 8.9 8 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain 45 c3by7E_ not modelled 8.8 50 PDB header:unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein structurally similar to sm/lsm-like2 rna-binding proteins (jcvi_pep_1096686650277) from uncultured marine3 organism at 2.60 a resolution 46 d1gxma_ not modelled 8.7 28 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 47 d1f9fa_ not modelled 8.6 16 Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain 48 c2la3A_ not modelled 8.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain 49 d1repc2 not modelled 8.3 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Replication initiation protein 50 c3lklB_ not modelled 8.2 19 PDB header:transport protein Chain: B: PDB Molecule:antisigma-factor antagonist stas; PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides 51 c2vo9C_ not modelled 8.1 12 PDB header:hydrolase Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase; PDBTitle: crystal structure of the enzymatically active domain of the2 listeria monocytogenes bacteriophage 500 endolysin ply500 52 c1pk1B_ not modelled 8.1 10 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 53 d2a7sa1 not modelled 8.1 19 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 54 d3b45a1 not modelled 8.0 20 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 55 c2jnvA_ not modelled 7.9 6 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 56 c3rzaA_ not modelled 7.9 8 PDB header:hydrolase Chain: A: PDB Molecule:tripeptidase; PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution 57 d1y0ua_ not modelled 7.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 58 d1o5wa2 not modelled 7.8 9 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:L-aminoacid/polyamine oxidase 59 c2l69A_ not modelled 7.8 29 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 60 c3jycA_ not modelled 7.7 21 PDB header:metal transport Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2; PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution 61 d1r76a_ not modelled 7.7 18 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 62 d1vrga1 not modelled 7.7 19 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 63 c3ps5A_ not modelled 7.7 10 PDB header:hydrolase, signaling protein Chain: A: PDB Molecule:tyrosine-protein phosphatase non-receptor type 6; PDBTitle: crystal structure of the full-length human protein tyrosine2 phosphatase shp-1 64 d1z3xa1 not modelled 7.6 20 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:GUN4-associated domain 65 c3gycB_ not modelled 7.4 16 PDB header:hydrolase Chain: B: PDB Molecule:putative glycoside hydrolase; PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 66 c3c4rC_ not modelled 7.4 11 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein encoded by2 cryptic prophage 67 d1qqra_ not modelled 7.4 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase 68 d2j8cl1 not modelled 7.3 14 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 69 c2k10A_ not modelled 7.3 36 PDB header:antimicrobial protein Chain: A: PDB Molecule:ranatuerin-2csa; PDBTitle: confirmational analysis of the broad-spectrum antibacterial2 peptide, rantuerin-2csa: identification of a full length3 helix-turn-helix motif 70 c3kv1A_ not modelled 7.2 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri 71 d1pixa2 not modelled 7.2 11 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 72 d1egwa_ not modelled 7.1 10 Fold:SRF-like Superfamily:SRF-like Family:SRF-like 73 c2bj3D_ not modelled 7.1 20 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 74 c3au5B_ not modelled 7.0 18 PDB header:motor protein Chain: B: PDB Molecule:myosin-x; PDBTitle: structure of the human myosin-x myth4-ferm cassette 75 d1nj1a1 not modelled 7.0 12 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 76 d1rh5a_ not modelled 7.0 13 Fold:Preprotein translocase SecY subunit Superfamily:Preprotein translocase SecY subunit Family:Preprotein translocase SecY subunit 77 c1v85A_ not modelled 7.0 10 PDB header:apoptosis Chain: A: PDB Molecule:similar to ring finger protein 36; PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator 78 d1pk3a1 not modelled 7.0 10 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 79 d1udxa3 not modelled 7.0 17 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 80 d2hzaa1 not modelled 7.0 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 81 c3kpaB_ not modelled 7.0 33 PDB header:ligase Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme; PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable) 82 d2p41a1 not modelled 6.9 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:mRNA cap methylase 83 c2o9xA_ not modelled 6.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:reductase, assembly protein; PDBTitle: crystal structure of a putative redox enzyme maturation protein from2 archaeoglobus fulgidus 84 c1q5vB_ not modelled 6.9 33 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 85 c1usdA_ not modelled 6.8 35 PDB header:signaling protein Chain: A: PDB Molecule:vasodilator-stimulated phosphoprotein; PDBTitle: human vasp tetramerisation domain l352m 86 c3bm2B_ not modelled 6.8 9 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 87 c3eyyA_ not modelled 6.8 16 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 88 c3k7cC_ not modelled 6.8 10 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 89 c3qyfA_ not modelled 6.8 15 PDB header:antiviral protein Chain: A: PDB Molecule:crispr-associated protein; PDBTitle: crystal structure of the crispr-associated protein sso1393 from2 sulfolobus solfataricus 90 c3komB_ not modelled 6.8 9 PDB header:transferase Chain: B: PDB Molecule:transketolase; PDBTitle: crystal structure of apo transketolase from francisella tularensis 91 d1ej5a_ not modelled 6.7 25 Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 92 c3o5cA_ not modelled 6.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 93 d1y5ic1 not modelled 6.7 9 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 94 d2otaa1 not modelled 6.7 36 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 95 c3lloA_ not modelled 6.7 22 PDB header:motor protein Chain: A: PDB Molecule:prestin; PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5) 96 c3ng0A_ not modelled 6.7 8 PDB header:ligase Chain: A: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803 97 d2hzab1 not modelled 6.6 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 98 d1ji5a_ not modelled 6.6 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 99 c2ca9B_ not modelled 6.6 20 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation