Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75974
DateThu Jan 5 12:16:42 GMT 2012
Unique Job ID8f84b58747639b26

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bdnB_
Top template information
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
Confidence and coverage
Confidence:100.0% Coverage: 92%
207 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCF
Secondary structure 
















SS confidence 



























































Disorder  ???














???

















?
?????????









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   .........70.........80.........90.........100.........110.........120
Sequence  DLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYP
Secondary structure 












































SS confidence 



























































Disorder 







?????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  CPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIE
Secondary structure 































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   .........190.........200.........210.........220....
Sequence  DGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
Secondary structure 















SS confidence 











































Disorder 





































??????
Disorder confidence 











































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bdn chain B

3D model

Region: 5 - 218
Aligned: 207
Modelled: 214
Confidence: 100.0%
Identity: 25%
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor

Phyre2

PDB 3k2z chain A

3D model

Region: 1 - 217
Aligned: 186
Modelled: 189
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima

Phyre2

PDB 2hnf chain A

3D model

Region: 87 - 215
Aligned: 126
Modelled: 129
Confidence: 99.9%
Identity: 33%
PDB header:viral protein
Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a;
PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region

Phyre2

PDB 2fjr chain B

3D model

Region: 9 - 216
Aligned: 176
Modelled: 191
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186

Phyre2

PDB 1jhf chain A domain 2

3D model

Region: 92 - 216
Aligned: 120
Modelled: 125
Confidence: 99.9%
Identity: 22%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 1jhh chain B

3D model

Region: 92 - 216
Aligned: 114
Modelled: 116
Confidence: 99.9%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:lexa repressor;
PDBTitle: lexa s119a mutant

Phyre2

PDB 1f39 chain A

3D model

Region: 125 - 219
Aligned: 92
Modelled: 95
Confidence: 99.9%
Identity: 39%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 1umu chain A

3D model

Region: 123 - 216
Aligned: 91
Modelled: 92
Confidence: 99.8%
Identity: 31%
Fold: LexA/Signal peptidase
Superfamily: LexA/Signal peptidase
Family: LexA-related

Phyre2

PDB 1y9q chain A

3D model

Region: 3 - 167
Aligned: 159
Modelled: 163
Confidence: 99.4%
Identity: 13%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae

Phyre2

PDB 2bno chain A

3D model

Region: 2 - 168
Aligned: 165
Modelled: 167
Confidence: 99.3%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.

Phyre2

PDB 2kpj chain A

3D model

Region: 2 - 83
Aligned: 80
Modelled: 82
Confidence: 99.1%
Identity: 11%
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a

Phyre2

PDB 3ivp chain D

3D model

Region: 1 - 78
Aligned: 72
Modelled: 78
Confidence: 99.0%
Identity: 8%
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.

Phyre2

PDB 3b7h chain A

3D model

Region: 1 - 75
Aligned: 74
Modelled: 75
Confidence: 99.0%
Identity: 14%
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11

Phyre2

PDB 3op9 chain A

3D model

Region: 10 - 77
Aligned: 66
Modelled: 68
Confidence: 99.0%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua

Phyre2

PDB 2cro chain A

3D model

Region: 1 - 71
Aligned: 64
Modelled: 67
Confidence: 99.0%
Identity: 17%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Phage repressors

Phyre2

PDB 3mlf chain C

3D model

Region: 10 - 71
Aligned: 60
Modelled: 62
Confidence: 99.0%
Identity: 12%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.

Phyre2

PDB 3bs3 chain A

3D model

Region: 11 - 68
Aligned: 56
Modelled: 58
Confidence: 98.9%
Identity: 9%
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis

Phyre2

PDB 1y9q chain A domain 1

3D model

Region: 3 - 73
Aligned: 69
Modelled: 70
Confidence: 98.9%
Identity: 9%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Probable transcriptional regulator VC1968, N-terminal domain

Phyre2

PDB 1adr chain A

3D model

Region: 1 - 78
Aligned: 74
Modelled: 76
Confidence: 98.9%
Identity: 14%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Phage repressors

Phyre2

PDB 2b5a chain A domain 1

3D model

Region: 1 - 75
Aligned: 73
Modelled: 75
Confidence: 98.9%
Identity: 18%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: SinR domain-like

Phyre2
1

c3bdnB_
2

c3k2zA_
3

c2hnfA_
4

c2fjrB_
5

d1jhfa2
6

c1jhhB_
7

d1f39a_
8

d1umua_
9

c1y9qA_
10

c2bnoA_
11

c2kpjA_
12

c3ivpD_
13

c3b7hA_
14

c3op9A_
15

d2croa_
16

c3mlfC_
17

c3bs3A_
18

d1y9qa1
19

d1adra_
20

d2b5aa1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bdnB_



100.0 25 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
2c3k2zA_



100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
3c2hnfA_



99.9 33 PDB header:viral protein
Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a;
PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region
4c2fjrB_



99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
5d1jhfa2



99.9 22 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
6c1jhhB_



99.9 25 PDB header:hydrolase
Chain: B: PDB Molecule:lexa repressor;
PDBTitle: lexa s119a mutant
7d1f39a_



99.9 39 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
8d1umua_



99.8 31 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:LexA-related
9c1y9qA_



99.4 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
10c2bnoA_



99.3 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
11c2kpjA_



99.1 11 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
12c3ivpD_



99.0 8 PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
13c3b7hA_



99.0 14 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
14c3op9A_



99.0 15 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
15d2croa_



99.0 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
16c3mlfC_



99.0 12 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
17c3bs3A_



98.9 9 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
18d1y9qa1



98.9 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
19d1adra_



98.9 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
20d2b5aa1



98.9 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
21c3omtA_



not modelled 98.9 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
22c1b0nA_



not modelled 98.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
23d1b0na2



not modelled 98.9 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
24c3f52A_



not modelled 98.9 11 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
25c3lisB_



not modelled 98.9 13 PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
26d1rioa_



not modelled 98.9 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
27d2r1jl1



not modelled 98.9 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
28d1y7ya1



not modelled 98.9 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
29d1r69a_



not modelled 98.9 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
30d1sq8a_



not modelled 98.8 15 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
31c2jvlA_



not modelled 98.8 10 PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
32c2ewtA_



not modelled 98.8 10 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
33d1x57a1



not modelled 98.8 17 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
34d1lmb3_



not modelled 98.8 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
35c2ebyA_



not modelled 98.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
36d1llib_



not modelled 98.8 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
37d1utxa_



not modelled 98.8 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
38c3cecA_



not modelled 98.7 11 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
39c3clcC_



not modelled 98.7 14 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
40d2icta1



not modelled 98.7 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
41c2xcjB_



not modelled 98.7 12 PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
42c3f6wE_



not modelled 98.7 9 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
43c3trbA_



not modelled 98.7 13 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
44c2o38A_



not modelled 98.7 7 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
45d2o38a1



not modelled 98.7 7 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
46c3eusB_



not modelled 98.6 10 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
47c3kxaD_



not modelled 98.6 13 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
48c3dnvB_



not modelled 98.6 15 PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
49c3t76A_



not modelled 98.6 8 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
50d2ofya1



not modelled 98.6 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
51d2a6ca1



not modelled 98.5 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
52c2ef8A_



not modelled 98.4 16 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
53c3fmyA_



not modelled 98.4 15 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
54c2fkdK_



not modelled 98.4 18 PDB header:transcription regulator
Chain: K: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of the c-terminal domain of bacteriophage2 186 repressor
55c2wusR_



not modelled 98.4 12 PDB header:structural protein
Chain: R: PDB Molecule:putative uncharacterized protein;
PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz
56d1b12a_



not modelled 98.4 24 Fold:LexA/Signal peptidase
Superfamily:LexA/Signal peptidase
Family:Type 1 signal peptidase
57d2ppxa1



not modelled 98.3 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
58c2ppxA_



not modelled 98.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
59c3fymA_



not modelled 98.3 12 PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
60c3pxpA_



not modelled 98.1 13 PDB header:transcription regulator
Chain: A: PDB Molecule:helix-turn-helix domain protein;
PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
61c3bd1B_



not modelled 98.0 13 PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
62c3gn5B_



not modelled 98.0 15 PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
63c2axzC_



not modelled 97.8 7 PDB header:transcription
Chain: C: PDB Molecule:prgx;
PDBTitle: crystal structure of prgx/ccf10 complex
64c2qfcB_



not modelled 97.7 16 PDB header:transcription regulation
Chain: B: PDB Molecule:plcr protein;
PDBTitle: crystal structure of bacillus thuringiensis plcr complexed with papr
65c3r1fO_



not modelled 96.9 13 PDB header:transcription
Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis
66d1nera_



not modelled 96.4 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
67d1ic8a2



not modelled 95.9 5 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:POU-specific domain
68d1lcda_



not modelled 95.9 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
69d2bjca1



not modelled 95.4 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
70d2hsga1



not modelled 95.4 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
71d1qpza1



not modelled 95.4 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
72d1uxca_



not modelled 95.4 10 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
73c2l8nA_



not modelled 95.3 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
74d1rzsa_



not modelled 95.2 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
75d1uxda_



not modelled 95.0 8 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
76c2lcvA_



not modelled 95.0 13 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
77d1efaa1



not modelled 94.9 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
78c1bdhA_



not modelled 94.8 11 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
79c3kjxD_



not modelled 94.7 7 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
80c3h5tA_



not modelled 94.6 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
81d1hlva1



not modelled 94.5 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
82c3mkyP_



not modelled 94.3 15 PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
83c1r71B_



not modelled 94.2 8 PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna
84d1r71a_



not modelled 94.2 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
85c3mkzU_



not modelled 93.9 15 PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
86c2elhA_



not modelled 93.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
87c1zvvA_



not modelled 93.6 13 PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
88c1zx4B_



not modelled 93.4 8 PDB header:translation
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
89d1vz0a1



not modelled 93.0 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
90d1bw6a_



not modelled 91.8 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
91d1z05a1



not modelled 91.7 3 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
92c1ic8B_



not modelled 91.5 4 PDB header:transcription/dna
Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
93d1biaa1



not modelled 91.5 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
94d1r1ua_



not modelled 91.4 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
95c2w48D_



not modelled 91.3 14 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
96c1u78A_



not modelled 90.8 12 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
97d1z6ra1



not modelled 90.6 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
98c2pijB_



not modelled 90.5 18 PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
99c1z6rC_



not modelled 90.2 6 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
100d1k78a1



not modelled 90.1 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
101c2oqgA_



not modelled 90.1 18 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
102c2h8rA_



not modelled 90.0 4 PDB header:transcription activator/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta;
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
103c2dt5A_



not modelled 89.9 14 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
104c2p6tH_



not modelled 89.8 13 PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
105c1z05A_



not modelled 89.7 3 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
106d2jn6a1



not modelled 89.6 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
107c1hlvA_



not modelled 89.4 10 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
108d1pdnc_



not modelled 89.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
109c3cuoB_



not modelled 88.7 14 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
110c1r22B_



not modelled 88.6 14 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
111d6paxa1



not modelled 88.6 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
112c2zkzC_



not modelled 88.2 9 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
113c2jscB_



not modelled 88.1 21 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050;
PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
114d1zs4a1



not modelled 87.8 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Bacteriophage CII protein
115c2kkoB_



not modelled 87.7 19 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
116d1j5ya1



not modelled 87.7 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
117c3pqkD_



not modelled 87.7 17 PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
118d1r1ta_



not modelled 87.1 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
119d3orca_



not modelled 86.9 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
120d2cg4a1



not modelled 86.6 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0