Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	Y	Q	L	T	L	N	W	P	D	F	L	E	R	H	W	Q	K	R	P	V	V	L	K	R	G	F	N	N	F	I	D	P	I	S	P	D	E	L	A	G	L	A	M	E	S	E	V	D	S	R	L	V	S	H	Q	D	G	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	Q	V	S	H	G	P	F	E	S	Y	D	H	L	G	E	T	N	W	S	L	L	V	Q	A	V	N	H	W	H	E	P	T	A	A	L	M	R	P	F	R	E	L	P	D	W	R	I	D	D	L	M	I	S	F	S	V	P	G	G
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	V	G	P	H	L	D	Q	Y	D	V	F	I	I	Q	G	T	G	R	R	R	W	R	V	G	E	K	L	Q	M	K	Q	H	C	P	H	P	D	L	L	Q	V	D	P	F	E	A	I	I	D	E	E	L	E	P	G	D	I	L	Y
Secondary structure
SS confidence
Disorder																															?	?	?	?	?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	P	G	F	P	H	E	G	Y	A	L	E	N	A	M	N	Y	S	V	G	F	R	A	P	N	T	R	E	L	I	S	G	F	A	D	Y	V	L	Q	R	E	L	G	G	N	Y	Y	S	D	P	D	V	P	P	R	A	H	P	A
Secondary structure
SS confidence
Disorder																																													?		?								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	V	L	P	Q	E	M	D	K	L	R	E	M	M	L	E	L	I	N	Q	P	E	H	F	K	Q	W	F	G	E	F	I	S	Q	S	R	H	E	L	D	I	A	P	P	E	P	P	Y	Q	P	D	E	I	Y	D	A	L	K	Q	G
Secondary structure
SS confidence
Disorder		?	?																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	V	L	V	R	L	G	G	L	R	V	L	R	I	G	D	D	V	Y	A	N	G	E	K	I	D	S	P	H	R	P	A	L	D	A	L	A	S	N	I	A	L	T	A	E	N	F	G	D	A	L	E	D	P	S	F	L	A	M	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence		A	A	L	V	N	S	G	Y	W	F	F	E	G
Secondary structure
SS confidence
Disorder													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2xdv chain A Region: 6 - 371 Aligned: 336 Modelled: 338 Confidence: 100.0% Identity: 14% PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 Phyre2 PDB 1vrb chain A domain 1 Region: 6 - 260 Aligned: 247 Modelled: 255 Confidence: 100.0% Identity: 16% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Asparaginyl hydroxylase-like Phyre2 PDB 3al6 chain A Region: 6 - 274 Aligned: 248 Modelled: 250 Confidence: 100.0% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 Phyre2 PDB 3uyj chain A Region: 1 - 202 Aligned: 202 Modelled: 202 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg Phyre2 PDB 1h2k chain A Region: 1 - 275 Aligned: 249 Modelled: 251 Confidence: 100.0% Identity: 19% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Hypoxia-inducible factor HIF ihhibitor (FIH1) Phyre2 PDB 3k2o chain B Region: 6 - 217 Aligned: 212 Modelled: 212 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase Phyre2 PDB 3k3n chain A Region: 11 - 216 Aligned: 205 Modelled: 206 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 Phyre2 PDB 3pu3 chain A Region: 6 - 216 Aligned: 210 Modelled: 211 Confidence: 99.9% Identity: 12% PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex Phyre2 PDB 2yu1 chain A Region: 6 - 216 Aligned: 206 Modelled: 211 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate Phyre2 PDB 3kva chain A Region: 11 - 216 Aligned: 206 Modelled: 206 Confidence: 99.8% Identity: 13% PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate Phyre2 PDB 3kv5 chain D Region: 10 - 216 Aligned: 207 Modelled: 207 Confidence: 99.7% Identity: 12% PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine Phyre2 PDB 3kv4 chain A Region: 11 - 216 Aligned: 206 Modelled: 206 Confidence: 99.7% Identity: 13% PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 Phyre2 PDB 3n9m chain C Region: 11 - 216 Aligned: 206 Modelled: 206 Confidence: 99.7% Identity: 10% PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone Phyre2 PDB 2xxz chain A Region: 5 - 206 Aligned: 200 Modelled: 202 Confidence: 99.6% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain Phyre2 PDB 2xue chain B Region: 108 - 271 Aligned: 164 Modelled: 164 Confidence: 98.5% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of jmjd3 Phyre2 PDB 1zvf chain A domain 1 Region: 109 - 200 Aligned: 78 Modelled: 78 Confidence: 98.4% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: 3-hydroxyanthranilic acid dioxygenase-like Phyre2 PDB 1yfu chain A domain 1 Region: 109 - 200 Aligned: 74 Modelled: 74 Confidence: 98.3% Identity: 22% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: 3-hydroxyanthranilic acid dioxygenase-like Phyre2 PDB 2pfw chain B Region: 111 - 205 Aligned: 73 Modelled: 73 Confidence: 98.2% Identity: 16% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution Phyre2 PDB 1yhf chain A domain 1 Region: 111 - 206 Aligned: 74 Modelled: 74 Confidence: 98.2% Identity: 20% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 3fjs chain C Region: 111 - 205 Aligned: 73 Modelled: 69 Confidence: 98.2% Identity: 25% PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution Phyre2 1 c2xdvA_ 2 d1vrba1 3 c3al6A_ 4 c3uyjA_ 5 d1h2ka_ 6 c3k2oB_ 7 c3k3nA_ 8 c3pu3A_ 9 c2yu1A_ 10 c3kvaA_ 11 c3kv5D_ 12 c3kv4A_ 13 c3n9mC_ 14 c2xxzA_ 15 c2xueB_ 16 d1zvfa1 17 d1yfua1 18 c2pfwB_ 19 d1yhfa1 20 c3fjsC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2xdvA_ 100.0 14 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 2 d1vrba1 100.0 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 3 c3al6A_ 100.0 16 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 4 c3uyjA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 5 d1h2ka_ 100.0 19 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 6 c3k2oB_ 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 7 c3k3nA_ 99.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 8 c3pu3A_ 99.9 12 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 9 c2yu1A_ 99.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 10 c3kvaA_ 99.8 13 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 11 c3kv5D_ 99.7 12 PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine 12 c3kv4A_ 99.7 13 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 13 c3n9mC_ 99.7 10 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 14 c2xxzA_ 99.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain 15 c2xueB_ 98.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of jmjd3 16 d1zvfa1 98.4 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 17 d1yfua1 98.3 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 18 c2pfwB_ 98.2 16 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 19 d1yhfa1 98.2 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 20 c3fjsC_ 98.2 25 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 21 d1od5a2 not modelled 98.1 29 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 22 d1lr5a_ not modelled 98.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 23 d1j58a_ not modelled 98.1 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 24 d2b8ma1 not modelled 98.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 25 c2ozjB_ not modelled 98.0 19 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 26 d1v70a_ not modelled 98.0 27 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 27 d2phla2 not modelled 98.0 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 28 c2vqaC_ not modelled 98.0 21 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 29 d1fxza2 not modelled 98.0 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 30 c2oa2A_ not modelled 97.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 31 d1uika2 not modelled 97.9 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 32 d2et1a1 not modelled 97.9 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 33 c1fxzC_ not modelled 97.9 25 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 34 c3h8uA_ not modelled 97.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 35 c2gu9B_ not modelled 97.8 23 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 36 c3cewA_ not modelled 97.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 37 c3ehkC_ not modelled 97.8 20 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 38 c3kglB_ not modelled 97.8 22 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 39 c2d40C_ not modelled 97.8 11 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 40 c1cauB_ not modelled 97.8 21 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 41 d2f4pa1 not modelled 97.8 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 42 d1y3ta1 not modelled 97.8 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 43 c2q30C_ not modelled 97.8 18 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 44 d1uija2 not modelled 97.8 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 45 d2phda1 not modelled 97.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 46 d2d40a1 not modelled 97.7 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 47 c3qacA_ not modelled 97.7 23 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 48 c3c3vA_ not modelled 97.7 25 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 49 c3rnsA_ not modelled 97.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 50 c2e9qA_ not modelled 97.7 21 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 51 c3ibmB_ not modelled 97.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 52 c3kscD_ not modelled 97.7 23 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 53 c3lwcA_ not modelled 97.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 54 c3kgzA_ not modelled 97.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 55 d1uija1 not modelled 97.6 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 56 d1juha_ not modelled 97.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 57 c3jzvA_ not modelled 97.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 58 d1dgwa_ not modelled 97.6 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 59 c3h7yA_ not modelled 97.6 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 60 d1o4ta_ not modelled 97.6 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 61 c1uijA_ not modelled 97.5 23 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 62 c2d5fB_ not modelled 97.5 32 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 63 c2cauA_ not modelled 97.5 24 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 64 d1uika1 not modelled 97.5 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 65 c2vpvA_ not modelled 97.4 11 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 66 c3ht2A_ not modelled 97.3 24 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 67 c3s7eB_ not modelled 97.3 18 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 68 c2eaaB_ not modelled 97.3 24 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 69 c2q8eB_ not modelled 97.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: specificity and mechanism of jmjd2a, a trimethyllysine-2 specific histone demethylase 70 d1nxma_ not modelled 97.3 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 71 d1j3pa_ not modelled 97.3 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 72 c2qnkA_ not modelled 97.3 23 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase; PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase 73 c2xlfA_ not modelled 97.2 17 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 74 d1x82a_ not modelled 97.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 75 c3i7dB_ not modelled 97.2 24 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 76 c3l2hD_ not modelled 97.2 19 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 77 c2fqpD_ not modelled 97.2 20 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 78 d1vj2a_ not modelled 97.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 79 c2i45C_ not modelled 97.1 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 80 c2oziA_ not modelled 97.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 81 c3bu7A_ not modelled 97.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 82 d3bu7a1 not modelled 97.1 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 83 d1fxza1 not modelled 97.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 84 d1sefa_ not modelled 97.1 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 85 c1sefA_ not modelled 97.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 86 c3d82A_ not modelled 97.0 23 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 87 c2w2iC_ not modelled 97.0 14 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate oxygenase; PDBTitle: crystal structure of the human 2-oxoglutarate oxygenase2 loc390245 88 d1od5a1 not modelled 97.0 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 89 d1rc6a_ not modelled 97.0 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 90 d1sfna_ not modelled 97.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 91 c3ejkA_ not modelled 97.0 11 PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution 92 d1sq4a_ not modelled 97.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 93 d1y9qa2 not modelled 96.9 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 94 c2os2A_ not modelled 96.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 3a; PDBTitle: crystal structure of jmjd2a complexed with histone h3 peptide2 trimethylated at lys36 95 d2ixca1 not modelled 96.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 96 c2zklA_ not modelled 96.6 17 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 97 c3opwA_ not modelled 96.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:dna damage-responsive transcriptional repressor rph1; PDBTitle: crystal structure of the rph1 catalytic core 98 c2o8qA_ not modelled 96.5 16 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 99 d2ixha1 not modelled 96.4 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 100 d1ep0a_ not modelled 96.3 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 101 c3bcwB_ not modelled 96.3 16 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 102 c2c0zA_ not modelled 96.3 18 PDB header:isomerase Chain: A: PDB Molecule:novw; PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides 103 d2phla1 not modelled 96.3 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 104 d2c0za1 not modelled 96.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 105 c1upiA_ not modelled 96.2 19 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 106 d1o5ua_ not modelled 96.1 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 107 d1wlta1 not modelled 95.9 25 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 108 c3ebrA_ not modelled 95.8 20 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 109 d1dzra_ not modelled 95.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 110 c2bnoA_ not modelled 95.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 111 c3eqeB_ not modelled 95.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112. 112 d1oi6a_ not modelled 95.6 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 113 c2y0oA_ not modelled 95.5 22 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 114 d2pa7a1 not modelled 95.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 115 d1zrra1 not modelled 95.0 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 116 d2bnma2 not modelled 94.9 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 117 c3rykB_ not modelled 94.9 18 PDB header:isomerase Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound 118 c2opkC_ not modelled 94.8 19 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 119 d3bb6a1 not modelled 94.2 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 120 c3cjxE_ not modelled 94.1 21 PDB header:unknown function Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold; PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0