Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	S	I	T	A	D	E	I	R	E	Q	F	S	Q	A	M	S	A	M	Y	Q	Q	E	V	P	Q	Y	G	T	L	L	E	L	V	A	D	V	N	L	A	V	L	E	N	N	P	Q	L	H	E	K	M	V	N	A	D	E	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																								?	?	?	?					?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	R	L	N	V	E	R	H	G	A	I	R	V	G	T	A	Q	E	L	A	T	L	R	R	M	F	A	I	M	G	M	Y	P	V	S	Y	Y	D	L	S	Q	A	G	V	P	V	H	S	T	A	F	R	P	I	D	D	A	S	L	A
Secondary structure
SS confidence
Disorder													?	?																													?				?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	N	P	F	R	V	F	T	S	L	L	R	L	E	L	I	E	N	E	I	L	R	Q	K	A	A	E	I	L	R	Q	R	D	I	F	T	P	R	C	R	Q	L	L	E	E	Y	E	Q	Q	G	G	F	N	E	T	Q	A	Q	E	F
Secondary structure
SS confidence
Disorder																																?	?	?	?	?																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Q	E	A	L	E	T	F	R	W	H	Q	S	A	T	V	D	E	E	T	Y	R	A	L	H	N	E	H	R	L	I	A	D	V	V	C	F	P	G	C	H	I	N	H	L	T	P	R	T	L	D	I	D	R	V	Q	S	M	M	P
Secondary structure
SS confidence
Disorder											?		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	C	G	I	E	P	K	I	L	I	E	G	P	P	R	R	E	V	P	I	L	L	R	Q	T	S	F	K	A	L	E	E	T	V	L	F	A	G	Q	K	Q	G	T	H	T	A	R	F	G	E	I	E	Q	R	G	V	A	L	T	P
Secondary structure
SS confidence
Disorder			?	?																												?					?	?	?	?	?	?	?															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	G	R	Q	L	Y	D	D	L	L	R	N	A	G	T	G	Q	D	N	L	T	H	Q	M	H	L	Q	E	T	F	R	T	F	P	D	S	E	F	L	M	R	Q	Q	G	L	A	W	F	R	Y	R	L	T	P	S	G	E	A	H	R
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?																																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Q	A	I	H	P	G	D	D	P	Q	P	L	I	E	R	G	W	V	V	A	Q	P	I	T	Y	E	D	F	L	P	V	S	A	A	G	I	F	Q	S	N	L	G	N	E	T	Q	T	R	S	H	G	N	A	S	R	E	A	F	E	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																											?		?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Sequence		A	L	G	C	P	V	L	D	E	F	Q	L	Y	Q	E	A	E	E	R	S	K	R	R	C	G	L	L
Secondary structure
SS confidence
Disorder																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rjb chain D Region: 5 - 438 Aligned: 372 Modelled: 389 Confidence: 100.0% Identity: 95% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein ydcj (sf1787)2 from shigella flexneri which includes domain duf1338.3 northeast structural genomics consortium target sfr276 Phyre2 PDB 3iuz chain A Region: 6 - 294 Aligned: 261 Modelled: 278 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase superfamily protein; PDBTitle: crystal structure of putative glyoxalase superfamily protein2 (yp_299723.1) from ralstonia eutropha jmp134 at 1.90 a resolution Phyre2 PDB 3lho chain A Region: 13 - 311 Aligned: 237 Modelled: 269 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative hydrolase (yp_751971.1) from shewanella2 frigidimarina ncimb 400 at 1.80 a resolution Phyre2 PDB 3rmu chain D Region: 206 - 255 Aligned: 47 Modelled: 50 Confidence: 72.5% Identity: 6% PDB header:isomerase Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial; PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee Phyre2 PDB 1v54 chain I Region: 386 - 399 Aligned: 14 Modelled: 14 Confidence: 61.9% Identity: 57% Fold: Single transmembrane helix Superfamily: Mitochondrial cytochrome c oxidase subunit VIc Family: Mitochondrial cytochrome c oxidase subunit VIc Phyre2 PDB 1cjx chain C Region: 218 - 245 Aligned: 28 Modelled: 28 Confidence: 60.7% Identity: 21% PDB header:oxidoreductase Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: crystal structure of pseudomonas fluorescens hppd Phyre2 PDB 3gm5 chain A Region: 219 - 256 Aligned: 38 Modelled: 38 Confidence: 58.3% Identity: 21% PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution Phyre2 PDB 1sqi chain A domain 2 Region: 208 - 245 Aligned: 38 Modelled: 38 Confidence: 56.0% Identity: 26% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 2nyx chain B Region: 296 - 337 Aligned: 33 Modelled: 42 Confidence: 54.7% Identity: 18% PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis Phyre2 PDB 3oa4 chain A Region: 219 - 261 Aligned: 43 Modelled: 43 Confidence: 54.3% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:glyoxalase; PDBTitle: crystal structure of hypothetical protein bh1468 from bacillus2 halodurans c-125 Phyre2 PDB 3boq chain B Region: 296 - 345 Aligned: 41 Modelled: 50 Confidence: 54.3% Identity: 24% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi Phyre2 PDB 2eth chain A domain 1 Region: 296 - 345 Aligned: 41 Modelled: 50 Confidence: 53.3% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 3bja chain A Region: 298 - 345 Aligned: 39 Modelled: 48 Confidence: 51.9% Identity: 26% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution Phyre2 PDB 3o2i chain B Region: 178 - 218 Aligned: 37 Modelled: 41 Confidence: 51.9% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein from2 leptospirillum sp. group ii uba Phyre2 PDB 1cjx chain A domain 2 Region: 218 - 245 Aligned: 28 Modelled: 28 Confidence: 51.9% Identity: 21% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1jc4 chain A Region: 218 - 255 Aligned: 35 Modelled: 38 Confidence: 51.6% Identity: 29% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Methylmalonyl-CoA epimerase Phyre2 PDB 3bj6 chain B Region: 296 - 340 Aligned: 36 Modelled: 45 Confidence: 50.9% Identity: 22% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 Phyre2 PDB 1t47 chain A domain 2 Region: 208 - 245 Aligned: 38 Modelled: 38 Confidence: 50.6% Identity: 18% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 2fbi chain A domain 1 Region: 296 - 339 Aligned: 35 Modelled: 44 Confidence: 47.0% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 1t47 chain A Region: 208 - 245 Aligned: 38 Modelled: 38 Confidence: 46.4% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structure of fe2-hppd bound to ntbc Phyre2 1 c2rjbD_ 2 c3iuzA_ 3 c3lhoA_ 4 c3rmuD_ 5 d1v54i_ 6 c1cjxC_ 7 c3gm5A_ 8 d1sqia2 9 c2nyxB_ 10 c3oa4A_ 11 c3boqB_ 12 d2etha1 13 c3bjaA_ 14 c3o2iB_ 15 d1cjxa2 16 d1jc4a_ 17 c3bj6B_ 18 d1t47a2 19 d2fbia1 20 c1t47A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rjbD_ 100.0 95 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein ydcj (sf1787)2 from shigella flexneri which includes domain duf1338.3 northeast structural genomics consortium target sfr276 2 c3iuzA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase superfamily protein; PDBTitle: crystal structure of putative glyoxalase superfamily protein2 (yp_299723.1) from ralstonia eutropha jmp134 at 1.90 a resolution 3 c3lhoA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative hydrolase (yp_751971.1) from shewanella2 frigidimarina ncimb 400 at 1.80 a resolution 4 c3rmuD_ 72.5 6 PDB header:isomerase Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial; PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee 5 d1v54i_ 61.9 57 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIc Family:Mitochondrial cytochrome c oxidase subunit VIc 6 c1cjxC_ 60.7 21 PDB header:oxidoreductase Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: crystal structure of pseudomonas fluorescens hppd 7 c3gm5A_ 58.3 21 PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution 8 d1sqia2 56.0 26 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 9 c2nyxB_ 54.7 18 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 10 c3oa4A_ 54.3 19 PDB header:lyase Chain: A: PDB Molecule:glyoxalase; PDBTitle: crystal structure of hypothetical protein bh1468 from bacillus2 halodurans c-125 11 c3boqB_ 54.3 24 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi 12 d2etha1 53.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 13 c3bjaA_ 51.9 26 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 14 c3o2iB_ 51.9 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein from2 leptospirillum sp. group ii uba 15 d1cjxa2 51.9 21 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 16 d1jc4a_ 51.6 29 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Methylmalonyl-CoA epimerase 17 c3bj6B_ 50.9 22 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 18 d1t47a2 50.6 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 19 d2fbia1 47.0 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 20 c1t47A_ 46.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structure of fe2-hppd bound to ntbc 21 d1sqia1 not modelled 45.7 12 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 22 c2r5vA_ not modelled 45.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:pcza361.1; PDBTitle: hydroxymandelate synthase crystal structure 23 c3jw4C_ not modelled 43.4 15 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family; PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum 24 c3bpxB_ not modelled 41.2 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 25 d1s3ja_ not modelled 40.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 26 c3nrvC_ not modelled 40.2 20 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 27 c3k0lA_ not modelled 38.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 28 c3e6mD_ not modelled 38.6 20 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 29 c2qqzB_ not modelled 38.2 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase family protein, putative; PDBTitle: crystal structure of putative glyoxalase family protein from bacillus2 anthracis 30 d1lnwa_ not modelled 38.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 31 c3nqoB_ not modelled 37.5 26 PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution 32 c3l7tB_ not modelled 35.0 13 PDB header:metal binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1112c 33 c2fa5B_ not modelled 35.0 26 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris 34 d1t47a1 not modelled 35.0 20 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 35 c1sqiA_ not modelled 34.7 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:4-hydroxyphenylpyruvic acid dioxygenase; PDBTitle: structural basis for inhibitor selectivity revealed by2 crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases 36 c2l1nA_ not modelled 34.5 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 37 c3kp3B_ not modelled 34.1 17 PDB header:transcription regulator/antibiotic Chain: B: PDB Molecule:transcriptional regulator tcar; PDBTitle: staphylococcus epidermidis in complex with ampicillin 38 d2pjsa1 not modelled 33.5 14 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 39 c2rk0B_ not modelled 32.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase domain; PDBTitle: crystal structure of glyoxylase/bleomycin resistance2 protein/dioxygenase domain from frankia sp. ean1pec 40 d1sqda2 not modelled 32.3 21 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 41 c3ecoB_ not modelled 32.0 18 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 42 c3fm5D_ not modelled 31.7 27 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator; PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1 43 d1ss4a_ not modelled 31.1 15 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein BC1747 44 c3hhgF_ not modelled 31.0 31 PDB header:transcription regulator Chain: F: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis. 45 d3broa1 not modelled 29.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 46 d1cjxa1 not modelled 29.5 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 47 c3g3zA_ not modelled 29.3 26 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 48 c3oajA_ not modelled 28.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo; PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168 49 c2zjsE_ not modelled 28.1 33 PDB header:protein transport/immune system Chain: E: PDB Molecule:preprotein translocase sece subunit; PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment 50 c3m1eA_ not modelled 27.9 30 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of benm_dbd 51 d1qipa_ not modelled 27.9 15 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase) 52 d2fbha1 not modelled 27.8 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 53 d1sqda1 not modelled 27.6 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 54 c2nnnB_ not modelled 26.7 20 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa 55 d1lj9a_ not modelled 26.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 56 c3nzpA_ not modelled 24.9 25 PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 57 d1s0pa_ not modelled 23.9 13 Fold:N-terminal domain of adenylylcyclase associated protein, CAP Superfamily:N-terminal domain of adenylylcyclase associated protein, CAP Family:N-terminal domain of adenylylcyclase associated protein, CAP 58 c2gxgA_ not modelled 23.3 12 PDB header:transcription Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator; PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7 59 d2p8ta1 not modelled 23.3 45 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PH0730 N-terminal domain-like 60 d1sp8a2 not modelled 23.1 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 61 d1kw3b1 not modelled 22.9 6 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 62 d2fbka1 not modelled 22.4 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 63 d1q1va_ not modelled 22.3 12 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 64 d1xg8a_ not modelled 22.3 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 65 c1g3wA_ not modelled 22.2 23 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 66 c3pkwA_ not modelled 22.2 15 PDB header:lyase Chain: A: PDB Molecule:toxoflavin lyase (tfla); PDBTitle: crystal structure of toxoflavin lyase (tfla) bound to mn(ii) 67 c3cjnA_ not modelled 22.2 27 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi 68 c3fzjC_ not modelled 21.9 38 PDB header:transcription regulator Chain: C: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: tsar low resolution crystal structure, tetragonal form 69 c2fxaB_ not modelled 21.6 21 PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis. 70 d1ni3a2 not modelled 21.1 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 71 c3g12A_ not modelled 21.0 13 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 72 c3b59A_ not modelled 21.0 25 PDB header:lyase Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of the mn(ii)-bound glyoxalase from novosphingobium2 aromaticivorans 73 c1fx7C_ not modelled 20.9 26 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 74 c3ijmA_ not modelled 20.7 41 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized restriction endonuclease-like fold PDBTitle: the structure of a restriction endonuclease-like fold superfamily2 protein from spirosoma linguale. 75 d1jgsa_ not modelled 19.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 76 c3ecjC_ not modelled 18.9 23 PDB header:oxidoreductase Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase); PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution 77 c3m2oB_ not modelled 18.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein; PDBTitle: crystal structure of a putative glyoxalase/bleomycin resistance2 protein from rhodopseudomonas palustris cga009 78 c2oczA_ not modelled 18.5 19 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: the structure of a putative 3-dehydroquinate dehydratase from2 streptococcus pyogenes. 79 d1jala2 not modelled 18.4 47 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 80 c2f5jA_ not modelled 17.6 33 PDB header:gene regulation Chain: A: PDB Molecule:mortality factor 4-like protein 1; PDBTitle: crystal structure of mrg domain from human mrg15 81 d2esna1 not modelled 17.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LysR-like transcriptional regulators 82 c1f5tA_ not modelled 17.3 37 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 83 d2csua2 not modelled 17.1 22 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 84 c3fwbB_ not modelled 16.5 28 PDB header:cell cycle, transcription Chain: B: PDB Molecule:nuclear mrna export protein sac3; PDBTitle: sac3:sus1:cdc31 complex 85 d1nkia_ not modelled 16.3 7 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 86 c1iz1B_ not modelled 16.3 38 PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator 87 c2esnC_ not modelled 15.7 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa 88 c2x4hA_ not modelled 15.7 24 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus 89 d2bv6a1 not modelled 15.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 90 d1q0oa2 not modelled 15.5 17 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 91 d1sp8a1 not modelled 15.4 17 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 92 c2rdpA_ not modelled 14.9 23 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 93 d1yhta1 not modelled 14.8 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 94 d1rv9a_ not modelled 14.8 40 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 95 d1914a2 not modelled 14.7 39 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 96 d1hsja1 not modelled 14.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 97 c1zswA_ not modelled 14.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family 98 c2y0nE_ not modelled 14.1 30 PDB header:transcription Chain: E: PDB Molecule:male-specific lethal 1 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3 99 d1xqaa_ not modelled 14.0 11 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0