Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	E	E	R	L	L	K	V	L	R	A	P	H	V	S	E	K	A	S	T	A	M	E	K	S	N	T	I	V	L	K	V	A	K	D	A	T	K	A	E	I	K	A	A	V	Q	K	L	F	E	V	E	V	E	V	V	N	T
Secondary structure
SS confidence
Disorder		?	?	?																				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Sequence		L	V	V	K	G	K	V	K	R	H	G	Q	R	I	G	R	R	S	D	W	K	K	A	Y	V	T	L	K	E	G	Q	N	L	D	F	V	G	G	A	E
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?	?																?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2zjr chain Q domain 1 Region: 8 - 98 Aligned: 90 Modelled: 91 Confidence: 100.0% Identity: 47% Fold: Ribosomal proteins S24e, L23 and L15e Superfamily: Ribosomal proteins S24e, L23 and L15e Family: L23p Phyre2 PDB 2qam chain T domain 1 Region: 1 - 93 Aligned: 93 Modelled: 93 Confidence: 100.0% Identity: 100% Fold: Ribosomal proteins S24e, L23 and L15e Superfamily: Ribosomal proteins S24e, L23 and L15e Family: L23p Phyre2 PDB 2j01 chain X domain 1 Region: 8 - 98 Aligned: 90 Modelled: 91 Confidence: 100.0% Identity: 43% Fold: Ribosomal proteins S24e, L23 and L15e Superfamily: Ribosomal proteins S24e, L23 and L15e Family: L23p Phyre2 PDB 2ww9 chain K Region: 8 - 99 Aligned: 79 Modelled: 79 Confidence: 100.0% Identity: 42% PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l25; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome Phyre2 PDB 2go5 chain 4 Region: 8 - 99 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 39% PDB header:translation/rna Chain: 4: PDB Molecule:ribosomal protein l23; PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex Phyre2 PDB 1vqo chain S domain 1 Region: 8 - 93 Aligned: 73 Modelled: 86 Confidence: 99.9% Identity: 40% Fold: Ribosomal proteins S24e, L23 and L15e Superfamily: Ribosomal proteins S24e, L23 and L15e Family: L23p Phyre2 PDB 2zkr chain S Region: 10 - 99 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 40% PDB header:ribosomal protein/rna Chain: S: PDB Molecule:rna expansion segment es39 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 4a17 chain R Region: 7 - 92 Aligned: 73 Modelled: 86 Confidence: 99.9% Identity: 42% PDB header:ribosome Chain: R: PDB Molecule:rpl23a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. Phyre2 PDB 1s1i chain T Region: 8 - 95 Aligned: 75 Modelled: 75 Confidence: 99.9% Identity: 47% PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l25; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 3bbo chain V Region: 8 - 99 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 30% PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 1wx7 chain A domain 1 Region: 27 - 66 Aligned: 39 Modelled: 40 Confidence: 80.9% Identity: 18% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 1yqb chain A domain 1 Region: 27 - 66 Aligned: 39 Modelled: 40 Confidence: 65.1% Identity: 18% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 1v86 chain A Region: 27 - 66 Aligned: 39 Modelled: 40 Confidence: 62.4% Identity: 21% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 2dzm chain A Region: 27 - 66 Aligned: 40 Modelled: 40 Confidence: 59.4% Identity: 15% PDB header:structural genomics unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1) Phyre2 PDB 2kan chain A Region: 27 - 61 Aligned: 35 Modelled: 35 Confidence: 54.6% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ar3433a; PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a Phyre2 PDB 2ojr chain A Region: 27 - 66 Aligned: 39 Modelled: 40 Confidence: 53.8% Identity: 26% PDB header:protein binding Chain: A: PDB Molecule:ubiquitin; PDBTitle: structure of ubiquitin solved by sad using the lanthanide-2 binding tag Phyre2 PDB 1wx8 chain A domain 1 Region: 27 - 66 Aligned: 39 Modelled: 40 Confidence: 53.7% Identity: 15% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 2klc chain A Region: 27 - 61 Aligned: 35 Modelled: 35 Confidence: 51.4% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr solution structure of human ubiquitin-like domain of2 ubiquilin 1, northeast structural genomics consortium3 (nesg) target ht5a Phyre2 PDB 1yx5 chain B Region: 27 - 67 Aligned: 40 Modelled: 41 Confidence: 49.2% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin; PDBTitle: solution structure of s5a uim-1/ubiquitin complex Phyre2 PDB 1z2m chain A Region: 27 - 59 Aligned: 33 Modelled: 33 Confidence: 48.2% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:interferon, alpha-inducible protein (clone ifi- PDBTitle: crystal structure of isg15, the interferon-induced2 ubiquitin cross reactive protein Phyre2 1 d2zjrq1 2 d2qamt1 3 d2j01x1 4 c2ww9K_ 5 c2go54_ 6 d1vqos1 7 c2zkrs_ 8 c4a17R_ 9 c1s1iT_ 10 c3bboV_ 11 d1wx7a1 12 d1yqba1 13 d1v86a_ 14 c2dzmA_ 15 c2kanA_ 16 c2ojrA_ 17 d1wx8a1 18 c2klcA_ 19 c1yx5B_ 20 c1z2mA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2zjrq1 100.0 47 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 2 d2qamt1 100.0 100 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 3 d2j01x1 100.0 43 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 4 c2ww9K_ 100.0 42 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l25; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 5 c2go54_ 99.9 39 PDB header:translation/rna Chain: 4: PDB Molecule:ribosomal protein l23; PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex 6 d1vqos1 99.9 40 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 7 c2zkrs_ 99.9 40 PDB header:ribosomal protein/rna Chain: S: PDB Molecule:rna expansion segment es39 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 8 c4a17R_ 99.9 42 PDB header:ribosome Chain: R: PDB Molecule:rpl23a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 9 c1s1iT_ 99.9 47 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l25; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 10 c3bboV_ 99.9 30 PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 11 d1wx7a1 80.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 12 d1yqba1 65.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 13 d1v86a_ 62.4 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 14 c2dzmA_ 59.4 15 PDB header:structural genomics unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1) 15 c2kanA_ 54.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ar3433a; PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a 16 c2ojrA_ 53.8 26 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin; PDBTitle: structure of ubiquitin solved by sad using the lanthanide-2 binding tag 17 d1wx8a1 53.7 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 18 c2klcA_ 51.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr solution structure of human ubiquitin-like domain of2 ubiquilin 1, northeast structural genomics consortium3 (nesg) target ht5a 19 c1yx5B_ 49.2 28 PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 20 c1z2mA_ 48.2 15 PDB header:signaling protein Chain: A: PDB Molecule:interferon, alpha-inducible protein (clone ifi- PDBTitle: crystal structure of isg15, the interferon-induced2 ubiquitin cross reactive protein 21 d1wm3a_ not modelled 46.9 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 22 c2kd0A_ not modelled 46.4 23 PDB header:signaling protein Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a 23 d1z2ma2 not modelled 44.2 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 24 d1bt0a_ not modelled 43.1 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 25 d1sifa_ not modelled 43.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 26 d2znvb1 not modelled 42.3 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 27 c2dziA_ not modelled 41.6 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-like protein 4a; PDBTitle: 2dzi/solution structure of the n-terminal ubiquitin-like2 domain in human ubiquitin-like protein 4a (gdx) 28 c2kdiA_ not modelled 39.5 20 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein 29 d2v94a1 not modelled 37.9 9 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 30 d1wjua_ not modelled 36.5 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 31 c2w9nA_ not modelled 36.4 24 PDB header:cell cycle Chain: A: PDB Molecule:ubiquitin; PDBTitle: crystal structure of linear di-ubiquitin 32 d1v5oa_ not modelled 36.0 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 33 d1zkha1 not modelled 35.2 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 34 d2bwfa1 not modelled 34.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 35 d2g1da1 not modelled 33.9 19 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 36 d1ndda_ not modelled 32.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 37 d1wh3a_ not modelled 31.7 3 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 38 d1wx9a1 not modelled 30.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 39 c2kk8A_ not modelled 29.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at4g05270; PDBTitle: nmr solution structure of a putative uncharacterized protein2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3449a 40 c2jxxA_ not modelled 29.4 14 PDB header:protein binding Chain: A: PDB Molecule:nfatc2-interacting protein; PDBTitle: nmr solution structure of ubiquitin-like domain of2 nfatc2ip. northeast structural genomics consortium target3 hr5627 41 d1v2ya_ not modelled 28.9 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 42 d2zeqa1 not modelled 28.7 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 43 c3m62B_ not modelled 27.2 17 PDB header:ligase/protein binding Chain: B: PDB Molecule:uv excision repair protein rad23; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of rad23 44 c2kjrA_ not modelled 26.5 28 PDB header:chaperone Chain: A: PDB Molecule:cg11242; PDBTitle: solution nmr structure of the n-terminal ubiquitin-like2 domain from tubulin-binding cofactor b, cg11242, from3 drosophila melanogaster. northeast structural genomics4 consortium target fr629a (residues 8-92) 45 d1j8ca_ not modelled 25.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 46 c3m63B_ not modelled 25.0 24 PDB header:ligase/protein binding Chain: B: PDB Molecule:ubiquitin domain-containing protein dsk2; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of dsk2 47 d1ywxa1 not modelled 24.8 14 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 48 d1c3ta_ not modelled 24.5 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 49 d1ogwa_ not modelled 24.4 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 50 d2fnjb1 not modelled 24.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 51 c2ekeC_ not modelled 23.5 18 PDB header:ligase/protein binding Chain: C: PDB Molecule:ubiquitin-like protein smt3; PDBTitle: structure of a sumo-binding-motif mimic bound to smt3p-2 ubc9p: conservation of a noncovalent ubiquitin-like3 protein-e2 complex as a platform for selective4 interactions within a sumo pathway 52 c2l7rA_ not modelled 22.6 29 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin-like protein fubi; PDBTitle: solution nmr structure of n-terminal ubiquitin-like domain of fubi, a2 ribosomal protein s30 precursor from homo sapiens. northeast3 structural genomics consortium (nesg) target hr6166 53 d1ttna1 not modelled 21.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 54 c1ttnA_ not modelled 21.6 17 PDB header:signaling protein Chain: A: PDB Molecule:dendritic cell-derived ubiquitin-like protein; PDBTitle: solution structure of the ubiquitin-like domain of human dc-2 ubp from dendritic cells 55 d1ud7a_ not modelled 21.0 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 56 d2faza1 not modelled 20.5 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 57 c2k25A_ not modelled 20.4 28 PDB header:unknown function Chain: A: PDB Molecule:ubb; PDBTitle: automated nmr structure of the ubb by fapsy 58 c3ai5A_ not modelled 20.3 28 PDB header:fluorescent protein, transcription Chain: A: PDB Molecule:yeast enhanced green fluorescent protein, ubiquitin; PDBTitle: crystal structure of yeast enhanced green fluorescent protein-2 ubiquitin fusion protein 59 c1s21A_ not modelled 20.0 29 PDB header:chaperone Chain: A: PDB Molecule:orf2; PDBTitle: crystal structure of avrpphf orf2, a type iii effector from2 p. syringae 60 d1s21a_ not modelled 20.0 29 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:AvrPphF ORF2, a type III effector 61 d1v5ta_ not modelled 18.9 34 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 62 d1xn9a_ not modelled 18.8 7 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e 63 d1wy8a1 not modelled 18.1 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 64 c2o37A_ not modelled 18.0 34 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 65 d1uawa_ not modelled 17.4 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 66 d1wgga_ not modelled 17.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 67 d1iyfa_ not modelled 16.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 68 d1ckqa_ not modelled 15.8 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI 69 c3p6yD_ not modelled 15.4 12 PDB header:rna binding protein/rna Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex 70 c2dgpA_ not modelled 14.0 10 PDB header:rna binding protein Chain: A: PDB Molecule:bruno-like 4, rna binding protein; PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein 71 d1we7a_ not modelled 13.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 72 d2c9wb1 not modelled 13.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 73 d1v6ea_ not modelled 12.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 74 d2io3b1 not modelled 12.1 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 75 d1vqod1 not modelled 11.5 24 Fold:RL5-like Superfamily:RL5-like Family:Ribosomal protein L5 76 d1euvb_ not modelled 11.0 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 77 d1l3ka1 not modelled 11.0 10 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 d1twfc2 not modelled 10.8 33 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 79 d1wjna_ not modelled 10.4 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 80 d1z2ma1 not modelled 10.1 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 81 c3izbU_ not modelled 9.3 17 PDB header:ribosome Chain: U: PDB Molecule:40s ribosomal protein s24; PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 82 c2xzmP_ not modelled 9.1 23 PDB header:ribosome Chain: P: PDB Molecule:rps24e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 83 c2divA_ not modelled 8.9 12 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein; PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein 84 d1wi8a_ not modelled 8.9 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 85 c2gj2A_ not modelled 8.5 41 PDB header:metal binding protein Chain: A: PDB Molecule:wsv230; PDBTitle: crystal structure of vp9 from white spot syndrome virus 86 c1qzeA_ not modelled 8.4 17 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 87 d1fxla2 not modelled 8.4 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 88 c2eqoA_ not modelled 8.1 50 PDB header:transcription Chain: A: PDB Molecule:tnf receptor-associated factor 3-interacting PDBTitle: solution structure of the stn_traf3ip1_nd domain of2 interleukin 13 receptor alpha 1-binding protein-1 [homo3 sapiens] 89 c2kqxA_ not modelled 7.8 29 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 90 d2u2fa_ not modelled 7.6 7 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1iura_ not modelled 7.3 24 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 92 d1whxa_ not modelled 7.3 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 d2j0111 not modelled 7.2 30 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 94 d1fxla1 not modelled 7.2 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 95 d1x5ua1 not modelled 7.1 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 96 d1q1va_ not modelled 7.0 17 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 97 d2cqda1 not modelled 7.0 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 98 c2lgwA_ not modelled 6.9 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 99 c2ctpA_ not modelled 6.8 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0