Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45545
DateThu Jan 5 12:03:04 GMT 2012
Unique Job ID8a064cc789df0964

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1qgna_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
Confidence and coverage
Confidence:100.0% Coverage: 96%
347 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKTFPLQSLTIIEAQQKQFALVDSICRHFPGSEFLTGGDLGLTPGLNQPRVTQRVEQVLA
Secondary structure 
SS confidence 
Disorder  ???????
??
?
?
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYPTTRVIIEQMGLTLITVDF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVAR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  IGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRATLYSGGSQIQGAQALEVLRGLV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  FAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANAQSKVLIVEFHQPIAARVLEEAQKR
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GALPYPVGAESKYEIPPLFYRLSGTFRQANPQSEHCAIRINPNRSGEETVLRILRESIAS
Secondary structure 
SS confidence 
Disorder 
????
?
???
??
??????????????
?
?????
??
Disorder confidence 
 
   .
Sequence  I
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1qgn chain A

3D model

Region: 7 - 361
Aligned: 347
Modelled: 355
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2ctz chain A domain 1

3D model

Region: 2 - 359
Aligned: 351
Modelled: 358
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ndn chain C

3D model

Region: 2 - 359
Aligned: 349
Modelled: 358
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Phyre2

PDB 1i41 chain J

3D model

Region: 3 - 361
Aligned: 351
Modelled: 359
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa

Phyre2

PDB 1cl1 chain A

3D model

Region: 4 - 361
Aligned: 349
Modelled: 353
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2gqn chain B

3D model

Region: 4 - 361
Aligned: 349
Modelled: 353
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide

Phyre2

PDB 2cb1 chain A

3D model

Region: 2 - 360
Aligned: 347
Modelled: 359
Confidence: 100.0%
Identity: 19%
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.

Phyre2

PDB 1y4i chain A domain 1

3D model

Region: 10 - 360
Aligned: 342
Modelled: 351
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3aem chain D

3D model

Region: 2 - 358
Aligned: 348
Modelled: 357
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate

Phyre2

PDB 2nmp chain C

3D model

Region: 35 - 360
Aligned: 322
Modelled: 325
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase

Phyre2

PDB 1e5e chain A

3D model

Region: 4 - 361
Aligned: 349
Modelled: 358
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1ibj chain C

3D model

Region: 2 - 361
Aligned: 342
Modelled: 346
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Phyre2

PDB 1ibj chain A

3D model

Region: 2 - 361
Aligned: 342
Modelled: 346
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1cs1 chain A

3D model

Region: 2 - 361
Aligned: 343
Modelled: 346
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1n8p chain A

3D model

Region: 2 - 360
Aligned: 343
Modelled: 345
Confidence: 100.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3qi6 chain B

3D model

Region: 35 - 358
Aligned: 314
Modelled: 323
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99

Phyre2

PDB 3e6g chain A

3D model

Region: 39 - 357
Aligned: 315
Modelled: 319
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Phyre2

PDB 1gc0 chain A

3D model

Region: 43 - 360
Aligned: 312
Modelled: 318
Confidence: 100.0%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ri6 chain A

3D model

Region: 48 - 358
Aligned: 300
Modelled: 311
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes

Phyre2

PDB 3cai chain A

3D model

Region: 5 - 361
Aligned: 342
Modelled: 357
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein

Phyre2
1
d1qgna_
2
d2ctza1
3
c3ndnC_
4
c1i41J_
5
d1cl1a_
6
c2gqnB_
7
c2cb1A_
8
d1y4ia1
9
c3aemD_
10
c2nmpC_
11
d1e5ea_
12
c1ibjC_
13
d1ibja_
14
d1cs1a_
15
d1n8pa_
16
c3qi6B_
17
c3e6gA_
18
d1gc0a_
19
c3ri6A_
20
c3caiA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1qgna_
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
2d2ctza1
100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
3c3ndnC_
100.0 17 PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
4c1i41J_
100.0 15 PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
5d1cl1a_
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
6c2gqnB_
100.0 15 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
7c2cb1A_
100.0 19 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
8d1y4ia1
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
9c3aemD_
100.0 15 PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
10c2nmpC_
100.0 17 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
11d1e5ea_
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
12c1ibjC_
100.0 15 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
13d1ibja_
100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
14d1cs1a_
100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
15d1n8pa_
100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
16c3qi6B_
100.0 17 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
17c3e6gA_
100.0 17 PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae
18d1gc0a_
100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
19c3ri6A_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
20c3caiA_
100.0 14 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
21c3ht4B_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213
22d1jf9a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
23d1pffa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
24c3hvyC_
not modelled 100.0 17 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
25c3fd0B_
not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
26c3e9kA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
27c3bcxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
28d1b9ha_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
29d2c0ra1
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c3nnkC_
not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
31d1qz9a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
32d1mdoa_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
33c2r0tA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
34c2po3B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
35c3dr4B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
36c2hzpA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
37c3uwcA_
not modelled 100.0 8 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
38d1w23a_
not modelled 100.0 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
39d1t3ia_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
40c2ogeC_
not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
41c3gwpA_
not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
42c3pplB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
43c2c7tA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
44c2hdyA_
not modelled 100.0 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
45c3frkB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
46c3nysA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
47c2w8wA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
48c3m5uA_
not modelled 100.0 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni
49d1o69a_
not modelled 100.0 9 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
50c3hqtB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
51c3ju7B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
52d1vjoa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
53d2bwna1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
54d2ch1a1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
55c3tqxA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
56d1bs0a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
57d1kl1a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
58c3a2bA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
59c3lvmB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
60d1p3wa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
61c3f0hA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
62c3eucB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
63c3ez1A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
64c3hdoB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
65c2fyfB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
66d2fnua1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
67c3islA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
68c3jtxB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
69d1c4ka2
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
70c3e77A_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp
71d1elua_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
72c3ffrA_
not modelled 100.0 9 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
73c2huuA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
74d1fc4a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
75c3l8aB_
not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
76c3qm2A_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
77c3dzzB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
78d1bjna_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
79d1svva_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
80c2z9wA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
81d1dfoa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
82d1eg5a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
83d1h0ca_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
84c2dkjB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
85c3kaxB_
not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
86c3h14A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
87d1x0ma1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
88c3ecdC_
not modelled 100.0 19 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
89c3dc1A_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
90d1fg7a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
91d2bkwa1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
92d2hoxa1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
93d2r5ea1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
94c3e2yB_
not modelled 100.0 14 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
95c3b46B_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
96c3d6kB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
97d1iuga_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
98d1v72a1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
99c3pj0D_
not modelled 100.0 13 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
100d1vp4a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
101c3h7fB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
102d1w7la_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
103c3lwsF_
not modelled 100.0 14 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
104c2zc0C_
not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
105d1o4sa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
106c2o0rA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
107c2x3lA_
not modelled 100.0 9 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
108d1c7na_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
109c3eibB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
110d1u08a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
111c3qguB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
112c1ynuA_
not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
113d1wyua1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
114c3n0lA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
115d1wsta1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
116d2gb3a1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
117c2o1bA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
118c3op7A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
119d1j32a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
120d1m6sa_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0