Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	S	Q	L	N	L	R	F	H	K	K	L	I	E	A	L	K	T	R	A	G	R	E	N	T	S	V	N	A	L	A	E	R	F	L	D	D	G	L	K	T	V	A	P	G	D	G	Y	F	Q	L	I	A	D	P	E	A	T	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?												?	?	?	?	?	?	?	?	?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	Q	L	Y	R	H	I	I	L	G	Q	T	F	G	T	S	A	L	S	R	D	E	L	R	F	V	L	V	H	V	R	E	A	F	L	R	G	H	N	R	L	A	T	L	P	A	L	D	T	L	L	D	I	T	G	N	L	L	A	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	V	E	H	D	R	P	V	D	G	H	Y	L	K	G	I	F	R	L	A	G	K	N	W	T	E	E	F	E	A	F	R	A	A	L	R	P	V	V	D	Q	M	Y	A	E	H	L	L	R	P	L	E	S	D	C	F	G	L	A	E
Secondary structure
SS confidence
Disorder																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	P	D	A	V	L	A	E	I	F	T	L	P	R	L	K	A	V	F	P	L	M	L	R	G	L	D	W	N	T	E	Q	A	R	T	L	A	Q	E	L	R	P	V	I	S	A	V	T	E	T	I	E	A	G	T	L	R	L	E	I
Secondary structure
SS confidence
Disorder																												?	?												?	?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	V	D	G	Q	H	P	G	E	R	P	G	A	W	Y	T	T	P	R	L	H	L	L	I	T	G	Q	D	F	V	V	P	Y	G	W	E	A	L	S	E	L	L	G	L	F	T	L	Y	A	R	H	P	E	A	L	T	H	G	H	Q
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?																																			?								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	E	R	V	M	F	S	P	P	G	N	V	T	P	E	G	F	F	G	I	D	G	L	R	I	F	M	P	A	E	A	F	E	T	L	V	R	E	L	A	T	R	C	Q	E	G	P	L	A	E	A	L	T	G	L	R	C	L	Y	G
Secondary structure
SS confidence
Disorder																																												?																?	?
Disorder confidence
		.	.
Sequence		D	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mnt chain A Region: 4 - 49 Aligned: 46 Modelled: 46 Confidence: 89.7% Identity: 30% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1u9p chain A Region: 4 - 49 Aligned: 46 Modelled: 46 Confidence: 79.8% Identity: 22% PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc Phyre2 PDB 1myl chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 53.5% Identity: 23% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 2kke chain A Region: 7 - 40 Aligned: 33 Modelled: 34 Confidence: 51.9% Identity: 39% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5 Phyre2 PDB 1b28 chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 51.8% Identity: 23% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1myl chain B Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 50.4% Identity: 23% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1baz chain B Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 47.6% Identity: 28% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1baz chain A Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 45.4% Identity: 28% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1bdt chain A Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 44.8% Identity: 28% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1myk chain A Region: 4 - 30 Aligned: 27 Modelled: 27 Confidence: 44.5% Identity: 30% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 3gtd chain B Region: 109 - 217 Aligned: 107 Modelled: 109 Confidence: 32.9% Identity: 17% PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii Phyre2 PDB 3ns4 chain A Region: 149 - 167 Aligned: 19 Modelled: 19 Confidence: 31.3% Identity: 16% PDB header:protein binding Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 53; PDBTitle: structure of a c-terminal fragment of its vps53 subunit suggests2 similarity of garp to a family of tethering complexes Phyre2 PDB 1c5e chain A Region: 130 - 146 Aligned: 17 Modelled: 17 Confidence: 29.9% Identity: 35% Fold: beta-clip Superfamily: Head decoration protein D (gpD, major capsid protein D) Family: Head decoration protein D (gpD, major capsid protein D) Phyre2 PDB 2dvl chain B Region: 145 - 221 Aligned: 72 Modelled: 77 Confidence: 27.1% Identity: 25% PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of project tt0160 from thermus thermophilus hb8 Phyre2 PDB 3h37 chain B Region: 8 - 78 Aligned: 71 Modelled: 67 Confidence: 26.9% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i Phyre2 PDB 1td4 chain A Region: 130 - 146 Aligned: 17 Modelled: 17 Confidence: 24.2% Identity: 29% Fold: beta-clip Superfamily: Head decoration protein D (gpD, major capsid protein D) Family: Head decoration protein D (gpD, major capsid protein D) Phyre2 PDB 1egd chain A domain 2 Region: 143 - 221 Aligned: 74 Modelled: 79 Confidence: 22.7% Identity: 23% Fold: Acyl-CoA dehydrogenase NM domain-like Superfamily: Acyl-CoA dehydrogenase NM domain-like Family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains Phyre2 PDB 2a1t chain C Region: 143 - 221 Aligned: 74 Modelled: 79 Confidence: 22.6% Identity: 23% PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific, PDBTitle: structure of the human mcad:etf e165betaa complex Phyre2 PDB 1egc chain B Region: 143 - 221 Aligned: 74 Modelled: 79 Confidence: 19.2% Identity: 23% PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa Phyre2 PDB 1ukw chain A Region: 144 - 221 Aligned: 73 Modelled: 78 Confidence: 18.5% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of medium-chain acyl-coa dehydrogenase2 from thermus thermophilus hb8 Phyre2 1 d1mnta_ 2 c1u9pA_ 3 d1myla_ 4 c2kkeA_ 5 d1b28a_ 6 d1mylb_ 7 d1bazb_ 8 d1baza_ 9 d1bdta_ 10 d1myka_ 11 c3gtdB_ 12 c3ns4A_ 13 d1c5ea_ 14 c2dvlB_ 15 c3h37B_ 16 d1td4a_ 17 d1egda2 18 c2a1tC_ 19 c1egcB_ 20 c1ukwA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1mnta_ 89.7 30 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 2 c1u9pA_ 79.8 22 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 3 d1myla_ 53.5 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 4 c2kkeA_ 51.9 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5 5 d1b28a_ 51.8 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 6 d1mylb_ 50.4 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 7 d1bazb_ 47.6 28 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 8 d1baza_ 45.4 28 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 9 d1bdta_ 44.8 28 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 10 d1myka_ 44.5 30 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 11 c3gtdB_ 32.9 17 PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii 12 c3ns4A_ 31.3 16 PDB header:protein binding Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 53; PDBTitle: structure of a c-terminal fragment of its vps53 subunit suggests2 similarity of garp to a family of tethering complexes 13 d1c5ea_ 29.9 35 Fold:beta-clip Superfamily:Head decoration protein D (gpD, major capsid protein D) Family:Head decoration protein D (gpD, major capsid protein D) 14 c2dvlB_ 27.1 25 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of project tt0160 from thermus thermophilus hb8 15 c3h37B_ 26.9 17 PDB header:transferase Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein; PDBTitle: the structure of cca-adding enzyme apo form i 16 d1td4a_ 24.2 29 Fold:beta-clip Superfamily:Head decoration protein D (gpD, major capsid protein D) Family:Head decoration protein D (gpD, major capsid protein D) 17 d1egda2 22.7 23 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 18 c2a1tC_ 22.6 23 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific, PDBTitle: structure of the human mcad:etf e165betaa complex 19 c1egcB_ 19.2 23 PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa 20 c1ukwA_ 18.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of medium-chain acyl-coa dehydrogenase2 from thermus thermophilus hb8 21 c2pg0B_ not modelled 18.1 21 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from geobacillus2 kaustophilus 22 d1grja1 not modelled 17.7 30 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 23 c3nf4B_ not modelled 17.3 17 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide 24 c2cx9C_ not modelled 17.1 12 PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase 25 c2derA_ not modelled 16.5 28 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 26 c2e7vA_ not modelled 15.5 11 PDB header:hydrolase Chain: A: PDB Molecule:transmembrane protease; PDBTitle: crystal structure of sea domain of transmembrane protease2 from mus musculus 27 d2i09a2 not modelled 14.8 20 Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like 28 d3mdea2 not modelled 14.1 22 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 29 d2pb9a1 not modelled 14.1 32 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 30 d1pp7u_ not modelled 13.0 46 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:39 kda initiator binding protein, IBP39, N-terminal domain 31 c2rp4C_ not modelled 12.2 50 PDB header:transcription Chain: C: PDB Molecule:transcription factor p53; PDBTitle: solution structure of the oligomerization domain in dmp53 32 c2jvwA_ not modelled 12.1 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117 33 c2a5wC_ not modelled 12.1 24 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus 34 d1go3f_ not modelled 12.0 30 Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF) 35 c1tt9B_ not modelled 10.9 29 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 36 c2kgnA_ not modelled 10.7 55 PDB header:signaling protein Chain: A: PDB Molecule:protein ste5; PDBTitle: solution structure of ste5pm24 in the zwitterionic dpc2 micelle 37 c2vigC_ not modelled 10.3 21 PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,; PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase 38 c2pjhA_ not modelled 10.3 19 PDB header:transport protein Chain: A: PDB Molecule:nuclear protein localization protein 4 homolog; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 39 c1rx0B_ not modelled 10.1 14 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8, PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand. 40 c3ghfA_ not modelled 9.5 18 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 41 c3bjqA_ not modelled 9.2 29 PDB header:viral protein Chain: A: PDB Molecule:phage-related protein; PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution 42 c2l4uA_ not modelled 8.9 55 PDB header:signaling protein Chain: A: PDB Molecule:24mer peptide from protein ste5; PDBTitle: solution structure of ste5pm24 in the presence of sds micelle 43 d2phpa1 not modelled 8.9 29 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 44 c2jifA_ not modelled 8.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) 45 c2kgmA_ not modelled 8.5 55 PDB header:signaling protein Chain: A: PDB Molecule:protein ste5; PDBTitle: solution structure of ste5pm24 in sds micelle 46 d1qyna_ not modelled 8.3 17 Fold:SecB-like Superfamily:SecB-like Family:Bacterial protein-export protein SecB 47 c3hieA_ not modelled 8.3 45 PDB header:exocytosis Chain: A: PDB Molecule:exocyst complex component sec3; PDBTitle: structure of the membrane-binding domain of the sec3 subunit2 of the exocyst complex 48 c3r7kB_ not modelled 8.3 18 PDB header:oxidoreductase Chain: B: PDB Molecule:probable acyl coa dehydrogenase; PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196 49 d1u5ea1 not modelled 8.2 14 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 50 c2zq5A_ not modelled 8.1 11 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form) 51 c2gsjA_ not modelled 7.7 24 PDB header:hydrolase Chain: A: PDB Molecule:protein ppl-2; PDBTitle: cdna cloning and 1.75a crystal structure determination of2 ppl2, a novel chimerolectin from parkia platycephala seeds3 exhibiting endochitinolytic activity 52 c3t38B_ not modelled 7.6 32 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 53 c2kb2A_ not modelled 7.4 27 PDB header:signaling protein, hydrolase regulator Chain: A: PDB Molecule:blrp1; PDBTitle: blrp1 bluf 54 d1yrxa1 not modelled 7.2 27 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:BLUF domain 55 d1jqia2 not modelled 7.0 18 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 56 d1v5ma_ not modelled 6.9 5 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 57 d2ccva1 not modelled 6.7 21 Fold:HPA-like Superfamily:Agglutinin HPA-like Family:Agglutinin HPA-like 58 c2p0fA_ not modelled 6.6 23 PDB header:ligand binding protein Chain: A: PDB Molecule:rho gtpase-activating protein 9; PDBTitle: arhgap9 ph domain in complex with ins(1,3,5)p3 59 d1ciya3 not modelled 6.6 23 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 60 d1ukwa2 not modelled 6.5 23 Fold:Acyl-CoA dehydrogenase NM domain-like Superfamily:Acyl-CoA dehydrogenase NM domain-like Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains 61 c3oibB_ not modelled 6.4 25 PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of a putative acyl-coa dehydrogenase from2 mycobacterium smegmatis, iodide soak 62 d1us3a2 not modelled 6.4 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 63 d1t3ta1 not modelled 6.3 32 Fold:RuvA C-terminal domain-like Superfamily:FGAM synthase PurL, linker domain Family:FGAM synthase PurL, linker domain 64 c1mpgB_ not modelled 6.1 30 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 65 d1o6da_ not modelled 6.0 42 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 66 c2fknC_ not modelled 5.8 19 PDB header:lyase Chain: C: PDB Molecule:urocanate hydratase; PDBTitle: crystal structure of urocanase from bacillus subtilis 67 c3a58A_ not modelled 5.8 45 PDB header:protein transport/exocytosis Chain: A: PDB Molecule:exocyst complex component sec3; PDBTitle: crystal structure of sec3p - rho1p complex from2 saccharomyces cerevisiae 68 d1uwka_ not modelled 5.8 31 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 69 c2xqyA_ not modelled 5.8 39 PDB header:immune system/viral protein Chain: A: PDB Molecule:envelope glycoprotein h; PDBTitle: crystal structure of pseudorabies core fragment of2 glycoprotein h in complex with fab d6.3 70 d1qy9a1 not modelled 5.5 15 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 71 d1ofcx2 not modelled 5.4 40 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SLIDE domain 72 c3a9lB_ not modelled 5.3 27 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 73 d1vk3a1 not modelled 5.3 29 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 74 c1yx3A_ not modelled 5.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dsrc; PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4 75 c2ebaI_ not modelled 5.3 18 PDB header:oxidoreductase Chain: I: PDB Molecule:putative glutaryl-coa dehydrogenase; PDBTitle: crystal structure of the putative glutaryl-coa dehydrogenase from2 thermus thermophilus 76 d1miwa2 not modelled 5.1 22 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Poly A polymerase head domain-like 77 d1droa_ not modelled 5.1 5 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 78 c2jyaA_ not modelled 5.1 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 79 d1h4ra3 not modelled 5.0 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0