PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ns4A_

Fold library id	PDB Header	Molecule	Title
c3ns4A_	PDB header: protein binding	Chain: A: PDB Molecule: vacuolar protein sorting-associated protein 53;	PDBTitle: structure of a c-terminal fragment of its vps53 subunit suggests2 similarity of garp to a family of tethering complexes

Links to external resources
Added to library: Sat Sep 18 08:50:29 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F I L S Q F N R D V Y K W N F L D K V I D I X T T N F V S N T I R L L Q P V P P F S L A G S K R K F E T R T V V N I G E Q L L L D L E L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S S
S S S S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E I F H T L P E S V S N D S D L R E N T S Y K R V K R H A D N N I D Q L L K F I K L L X A P L D S A D D Y Y E T Y S K L T N N N P D S A V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G
S
T T
T
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence S F V L A L K G I P W D L A L W K K X W S A Y N L E T N R D L F I F K W D K V L L G Q F E N N L A R X Q D P N W S K F V R Q D L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
G G G G G
T
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	I	L	S	Q	F	N	R	D	V	Y	K	W	N	F	L	D	K	V	I	D	I	X	T	T	N	F	V	S	N	T	I	R	L	L	Q	P	V	P	P	F	S	L	A	G	S	K	R	K	F	E	T	R	T	V	V	N	I	G	E	Q	L	L	L	D	L	E	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G																														S			S	S		S	S	S	S		S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	I	F	H	T	L	P	E	S	V	S	N	D	S	D	L	R	E	N	T	S	Y	K	R	V	K	R	H	A	D	N	N	I	D	Q	L	L	K	F	I	K	L	L	X	A	P	L	D	S	A	D	D	Y	Y	E	T	Y	S	K	L	T	N	N	N	P	D	S	A	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	G	G		S				T	T																											T				S													T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	S	F	V	L	A	L	K	G	I	P	W	D	L	A	L	W	K	K	X	W	S	A	Y	N	L	E	T	N	R	D	L	F	I	F	K	W	D	K	V	L	L	G	Q	F	E	N	N	L	A	R	X	Q	D	P	N	W	S	K	F	V	R	Q	D	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T			S																					G	G	G	G	G														T			S										T	T