Email l.a.kelley@imperial.ac.uk Description P0A986 Date Thu Jan 5 11:09:36 GMT 2012 Unique Job ID 86d55ab126e295af

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1h95a_ 99.9 41 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 d1mjca_ 99.9 70 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 3 d1c9oa_ 99.9 60 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 4 d2es2a1 99.9 59 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 5 c3camB_ 99.9 58 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 6 c3a0jB_ 99.9 51 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 7 d1g6pa_ 99.9 58 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 c2k5nA_ 99.8 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 9 c2kcmA_ 99.8 34 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 10 c3aqqD_ 99.8 34 PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 11 c3trzE_ 99.8 38 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 12 c2ytyA_ 99.7 27 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein) 13 c2ytxA_ 99.7 32 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) 14 d1wfqa_ 99.7 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 c1x65A_ 99.6 32 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 16 c2bh8B_ 99.6 61 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 17 c2ytvA_ 99.5 30 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein) 18 d2ix0a2 97.5 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 19 c2ix1A_ 97.0 21 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 20 d1a62a2 96.4 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 c2a8vA_ not modelled 96.3 25 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 22 d1smxa_ not modelled 95.3 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 c2vnuD_ not modelled 91.1 17 PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 24 d2ix0a1 not modelled 90.4 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 c1xpuB_ not modelled 86.2 30 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 26 c2k52A_ not modelled 85.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 27 c1hh2P_ not modelled 81.5 15 PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima 28 d1kl9a2 not modelled 81.4 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 29 c2l55A_ not modelled 79.2 25 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 30 d2c35b1 not modelled 78.8 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 31 d1u0la1 not modelled 77.5 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 32 c3go5A_ not modelled 77.3 13 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 33 d1y14b1 not modelled 75.6 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 34 c1l2fA_ not modelled 72.3 14 PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain 35 c1zeqX_ not modelled 69.1 13 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 36 c2c4rL_ not modelled 64.9 21 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 37 c2wp8J_ not modelled 64.7 15 PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease 38 c3l0oB_ not modelled 64.4 26 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 39 c1u0lB_ not modelled 63.7 11 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 40 d2z0sa1 not modelled 61.3 7 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 41 c2cqoA_ not modelled 60.4 17 PDB header:ribosome Chain: A: PDB Molecule:nucleolar protein of 40 kda; PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067 42 d2nn6h1 not modelled 60.1 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 43 c3h0gS_ not modelled 55.4 23 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 44 d2asba1 not modelled 49.7 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 45 d1hh2p1 not modelled 47.7 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 46 c2oceA_ not modelled 44.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 47 d3bzka4 not modelled 43.2 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 c2khiA_ not modelled 43.1 19 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 49 d2ba0a1 not modelled 42.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 50 c2gu1A_ not modelled 41.9 16 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 51 c2k4kA_ not modelled 41.6 23 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 52 c2b8kG_ not modelled 37.7 22 PDB header:transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: 12-subunit rna polymerase ii 53 c2xnqA_ not modelled 37.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm 54 d1wi5a_ not modelled 35.5 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 55 d2je6i1 not modelled 35.4 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 56 c2c35F_ not modelled 34.1 17 PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii 57 c1nt9G_ not modelled 33.8 22 PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii 58 c2dhxA_ not modelled 32.0 21 PDB header:rna binding protein Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10 PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant 59 c2khjA_ not modelled 30.4 19 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 60 c1j6qA_ not modelled 30.3 17 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 61 d1j6qa_ not modelled 30.3 17 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 62 d1q46a2 not modelled 27.8 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2asbA_ not modelled 27.2 10 PDB header:transcription/rna Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex 64 c2opgB_ not modelled 27.2 12 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz 65 c1go3E_ not modelled 25.6 29 PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex 66 c2pmzE_ not modelled 25.6 24 PDB header:translation, transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 67 d1h9ma2 not modelled 25.6 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 68 c2qt7B_ not modelled 24.9 23 PDB header:hydrolase Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms 69 c1yz6A_ not modelled 23.0 22 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi 70 c1q46A_ not modelled 22.0 8 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 71 d1ueqa_ not modelled 22.0 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 72 c3bpuA_ not modelled 21.6 19 PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant 73 c2z0sA_ not modelled 20.8 7 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 74 d1kq1a_ not modelled 19.9 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 75 c2kjdA_ not modelled 19.7 14 PDB header:signaling protein Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe- PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270) 76 c3ggeA_ not modelled 19.5 21 PDB header:protein binding Chain: A: PDB Molecule:pdz domain-containing protein gipc2; PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2 77 d1u1sa1 not modelled 19.5 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 78 c3qhsD_ not modelled 19.0 27 PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli 79 d1hk9a_ not modelled 18.9 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 80 d1be9a_ not modelled 18.8 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 81 c3hsbB_ not modelled 18.7 36 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 82 c2eqsA_ not modelled 18.5 12 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dhx8; PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8 83 c2kviA_ not modelled 18.4 32 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structure of nab3 rrm 84 c2dc2A_ not modelled 18.2 13 PDB header:structural protein Chain: A: PDB Molecule:golgi associated pdz and coiled-coil motif PDBTitle: solution structure of pdz domain 85 c2i04B_ not modelled 18.2 16 PDB header:peptide binding protein Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6 86 d2vnud3 not modelled 17.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 c2je6I_ not modelled 16.9 18 PDB header:hydrolase Chain: I: PDB Molecule:exosome complex rna-binding protein 1; PDBTitle: structure of a 9-subunit archaeal exosome 88 c1kq1W_ not modelled 16.6 18 PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq 89 c2iwnA_ not modelled 16.2 10 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target) 90 d1wf1a_ not modelled 16.1 26 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1ujda_ not modelled 16.0 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 d1tp5a1 not modelled 15.6 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 93 d1go3e1 not modelled 15.3 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 94 d1qaua_ not modelled 14.9 10 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 95 d1h9ma1 not modelled 14.4 13 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 96 c2iwoA_ not modelled 13.8 12 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 12th pdz domain of multiple pdz domain protein mpdz (casp2 target) 97 d1rgwa_ not modelled 13.8 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 98 c2dkrA_ not modelled 13.8 14 PDB header:protein transport Chain: A: PDB Molecule:lin-7 homolog b; PDBTitle: solution structure of the pdz domain from human lin-72 homolog b 99 d1fr3a_ not modelled 13.8 15 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP