Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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.

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60

Sequence

M

D

L

S

Q

L

T

P

R

R

P

Y

L

L

R

A

F

Y

E

W

L

L

D

N

Q

L

T

P

H

L

V

V

D

V

T

L

P

G

V

Q

V

P

M

E

Y

A

R

D

G

Q

I

V

L

N

I

A

P

R

A

V

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

.

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120

Sequence

G

N

L

E

L

A

N

D

E

V

R

F

N

A

R

F

G

G

I

P

R

Q

V

S

V

P

L

A

A

V

L

A

I

Y

A

R

E

N

G

A

G

T

M

F

E

P

E

A

A

Y

D

E

D

T

S

I

M

N

D

E

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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130

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.

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140

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150

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.

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160

.

.

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.

Sequence

E

A

S

A

D

N

E

T

V

M

S

V

I

D

G

D

K

P

D

H

D

D

D

T

H

P

D

D

E

P

P

Q

P

P

R

G

G

R

P

A

L

R

V

V

K

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

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?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yfn chain A domain 1 Region: 4 - 111 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 100% Fold: SspB-like Superfamily: SspB-like Family: Stringent starvation protein B, SspB Phyre2 PDB 1ou9 chain A Region: 5 - 122 Aligned: 118 Modelled: 118 Confidence: 100.0% Identity: 57% Fold: SspB-like Superfamily: SspB-like Family: Stringent starvation protein B, SspB Phyre2 PDB 1ou8 chain A Region: 7 - 111 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 63% Fold: SspB-like Superfamily: SspB-like Family: Stringent starvation protein B, SspB Phyre2 PDB 1zsz chain C domain 1 Region: 7 - 112 Aligned: 106 Modelled: 106 Confidence: 100.0% Identity: 61% Fold: SspB-like Superfamily: SspB-like Family: Stringent starvation protein B, SspB Phyre2 PDB 2qas chain A Region: 13 - 108 Aligned: 93 Modelled: 96 Confidence: 99.8% Identity: 24% PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog Phyre2 PDB 2nys chain A Region: 13 - 106 Aligned: 91 Modelled: 92 Confidence: 99.7% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. Phyre2 PDB 2nys chain A domain 1 Region: 13 - 106 Aligned: 91 Modelled: 92 Confidence: 99.7% Identity: 16% Fold: SspB-like Superfamily: SspB-like Family: AGR C 3712p-like Phyre2 PDB 2qaz chain C Region: 13 - 106 Aligned: 91 Modelled: 94 Confidence: 99.7% Identity: 24% PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog Phyre2 PDB 1whq chain A Region: 17 - 38 Aligned: 22 Modelled: 22 Confidence: 56.7% Identity: 18% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 3nrw chain A Region: 14 - 28 Aligned: 15 Modelled: 15 Confidence: 43.4% Identity: 20% PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a Phyre2 PDB 2aze chain A domain 1 Region: 51 - 84 Aligned: 33 Modelled: 34 Confidence: 43.0% Identity: 18% Fold: E2F-DP heterodimerization region Superfamily: E2F-DP heterodimerization region Family: DP dimerization segment Phyre2 PDB 1a0p chain A domain 1 Region: 14 - 28 Aligned: 15 Modelled: 15 Confidence: 29.2% Identity: 13% Fold: SAM domain-like Superfamily: lambda integrase-like, N-terminal domain Family: lambda integrase-like, N-terminal domain Phyre2 PDB 2kj5 chain A Region: 13 - 28 Aligned: 16 Modelled: 16 Confidence: 25.0% Identity: 6% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c Phyre2 PDB 1xb4 chain A domain 2 Region: 16 - 27 Aligned: 12 Modelled: 12 Confidence: 20.0% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 3i5p chain A Region: 16 - 27 Aligned: 12 Modelled: 12 Confidence: 18.9% Identity: 25% PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup170; PDBTitle: nup170(aa979-1502), s.cerevisiae Phyre2 PDB 3htu chain E Region: 16 - 31 Aligned: 16 Modelled: 16 Confidence: 18.2% Identity: 13% PDB header:protein transport Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: crystal structure of the human vps25-vps20 subcomplex Phyre2 PDB 6rxn chain A Region: 93 - 110 Aligned: 18 Modelled: 18 Confidence: 17.6% Identity: 11% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Rubredoxin Phyre2 PDB 1ro5 chain A Region: 13 - 32 Aligned: 20 Modelled: 20 Confidence: 17.2% Identity: 25% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: Autoinducer synthetase Phyre2 PDB 1nos chain A Region: 17 - 78 Aligned: 62 Modelled: 62 Confidence: 16.1% Identity: 26% Fold: Nitric oxide (NO) synthase oxygenase domain Superfamily: Nitric oxide (NO) synthase oxygenase domain Family: Nitric oxide (NO) synthase oxygenase domain Phyre2 PDB 2qdz chain A Region: 13 - 67 Aligned: 47 Modelled: 55 Confidence: 15.6% Identity: 19% PDB header:protein transport Chain: A: PDB Molecule:tpsb transporter fhac; PDBTitle: structure of the membrane protein fhac: a member of the2 omp85/tpsb transporter family Phyre2 1 d1yfna1 2 d1ou9a_ 3 d1ou8a_ 4 d1zszc1 5 c2qasA_ 6 c2nysA_ 7 d2nysa1 8 c2qazC_ 9 d1whqa_ 10 c3nrwA_ 11 d2azea1 12 d1a0pa1 13 c2kj5A_ 14 d1xb4a2 15 c3i5pA_ 16 c3htuE_ 17 d6rxna_ 18 d1ro5a_ 19 d1nosa_ 20 c2qdzA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1yfna1 100.0 100 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 2 d1ou9a_ 100.0 57 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 3 d1ou8a_ 100.0 63 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 4 d1zszc1 100.0 61 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 5 c2qasA_ 99.8 24 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 6 c2nysA_ 99.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. 7 d2nysa1 99.7 16 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like 8 c2qazC_ 99.7 24 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 9 d1whqa_ 56.7 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 10 c3nrwA_ 43.4 20 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 11 d2azea1 43.0 18 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:DP dimerization segment 12 d1a0pa1 29.2 13 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 13 c2kj5A_ 25.0 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c 14 d1xb4a2 20.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 15 c3i5pA_ 18.9 25 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup170; PDBTitle: nup170(aa979-1502), s.cerevisiae 16 c3htuE_ 18.2 13 PDB header:protein transport Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: crystal structure of the human vps25-vps20 subcomplex 17 d6rxna_ 17.6 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 18 d1ro5a_ 17.2 25 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:Autoinducer synthetase 19 d1nosa_ 16.1 26 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain 20 c2qdzA_ 15.6 19 PDB header:protein transport Chain: A: PDB Molecule:tpsb transporter fhac; PDBTitle: structure of the membrane protein fhac: a member of the2 omp85/tpsb transporter family 21 c2h0pA_ not modelled 15.4 11 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: nmr structure of the dengue-4 virus envelope protein domain2 iii 22 c2g0bG_ not modelled 15.3 14 PDB header:transferase Chain: G: PDB Molecule:feem; PDBTitle: the structure of feem, an n-acyl amino acid synthase from uncultured2 soil microbes 23 d2gena2 not modelled 15.1 25 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 24 d1t4na_ not modelled 15.0 13 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 25 c3nglA_ not modelled 14.3 24 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 26 c3c5pF_ not modelled 13.8 28 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein bas0735 of unknown function; PDBTitle: crystal structure of bas0735, a protein of unknown function from2 bacillus anthracis str. sterne 27 c2khvA_ not modelled 13.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b. 28 c2kdrX_ not modelled 13.7 44 PDB header:viral protein, membrane protein Chain: X: PDB Molecule:non-structural protein 4b; PDBTitle: solution structure of hcv ns4b(227-254) 29 d1a4ia1 not modelled 13.5 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 30 c3kb4D_ not modelled 13.3 36 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:alr8543 protein; PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141 31 d1qw9a2 not modelled 13.1 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 32 c2kkpA_ not modelled 12.4 13 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 33 c3qxyA_ not modelled 11.9 19 PDB header:transferase Chain: A: PDB Molecule:n-lysine methyltransferase setd6; PDBTitle: human setd6 in complex with rela lys310 34 d1d5va_ not modelled 11.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 35 d1b0aa1 not modelled 11.8 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 36 c2kd1A_ not modelled 11.7 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 37 d1h3ga1 not modelled 11.6 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 38 c2kiwA_ not modelled 11.5 12 PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). 39 c3rnvA_ not modelled 11.2 30 PDB header:hydrolase Chain: A: PDB Molecule:helper component proteinase; PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase 40 d1jhfa1 not modelled 10.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 41 c2kobA_ not modelled 10.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a 42 c1e17A_ not modelled 10.7 28 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 43 d1kzfa_ not modelled 10.6 20 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:Autoinducer synthetase 44 d1hl9a2 not modelled 10.6 29 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 45 d1t4lb_ not modelled 10.5 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 46 d2basa2 not modelled 10.4 8 Fold:Profilin-like Superfamily:Sensory domain-like Family:YkuI C-terminal domain-like 47 d1t4oa_ not modelled 10.4 13 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 48 c1t4oA_ not modelled 10.4 13 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 49 d3bpya1 not modelled 10.2 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 50 c1kq8A_ not modelled 10.0 17 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1 51 d1kq8a_ not modelled 10.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 52 d1uhra_ not modelled 10.0 22 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 53 c3msqC_ not modelled 10.0 0 PDB header:biosynthetic protein Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein; PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution 54 d1ok8a1 not modelled 9.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Class II viral fusion proteins C-terminal domain 55 c3g73A_ not modelled 9.8 33 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 56 d2c7fa2 not modelled 9.6 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 57 c2c2xB_ not modelled 9.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 58 c3htrB_ not modelled 9.3 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein; PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris 59 c1asyA_ not modelled 9.1 22 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 60 d2cxha1 not modelled 9.0 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Brix domain 61 c2cxhA_ not modelled 9.0 14 PDB header:rna binding protein Chain: A: PDB Molecule:probable brix-domain ribosomal biogenesis protein; PDBTitle: crystal structure of probable ribosomal biogenesis protein from2 aeropyrum pernix k1 62 c2keyA_ not modelled 8.9 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c 63 c4a5oB_ not modelled 8.6 24 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold) 64 d2hfha_ not modelled 8.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 65 c3da4B_ not modelled 8.5 20 PDB header:antibiotic Chain: B: PDB Molecule:colicin-m; PDBTitle: crystal structure of colicin m, a novel phosphatase2 specifically imported by escherichia coli 66 d2gpia1 not modelled 8.2 12 Fold:Shew3726-like Superfamily:Shew3726-like Family:Shew3726-like 67 d1v31a_ not modelled 8.2 22 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 68 d2a07f1 not modelled 8.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 69 d2c6ya1 not modelled 8.0 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 70 c2kcuA_ not modelled 8.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ctr107; PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107 71 c3co7C_ not modelled 7.8 22 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 72 c3b49A_ not modelled 7.8 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2189 protein; PDBTitle: crystal structure of an uncharacterized conserved protein from2 listeria innocua 73 c1a4iB_ not modelled 7.3 24 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase / PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase 74 c2y9zB_ not modelled 7.2 50 PDB header:transcription Chain: B: PDB Molecule:iswi one complex protein 3; PDBTitle: chromatin remodeling factor isw1a(del_atpase) in dna complex 75 c1eqrC_ not modelled 6.9 21 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 76 c1r7gA_ not modelled 6.9 30 PDB header:membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc) 77 d1ib8a1 not modelled 6.7 21 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 78 c1edzA_ not modelled 6.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase; PDBTitle: structure of the nad-dependent 5,10-2 methylenetetrahydrofolate dehydrogenase from saccharomyces3 cerevisiae 79 c1b8aB_ not modelled 6.5 15 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 80 d1f44a1 not modelled 6.5 20 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 81 c1b0aA_ not modelled 6.0 18 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 82 d2i7na2 not modelled 5.9 40 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 83 d1dgwa_ not modelled 5.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 84 c2oxoA_ not modelled 5.8 6 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 85 c2gjmA_ not modelled 5.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:lactoperoxidase; PDBTitle: crystal structure of buffalo lactoperoxidase at 2.75a resolution 86 c3p2oB_ not modelled 5.8 12 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 87 d1z66a1 not modelled 5.8 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Class II viral fusion proteins C-terminal domain 88 d1epwa3 not modelled 5.8 32 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Clostridium neurotoxins, catalytic domain 89 c4a26B_ not modelled 5.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 90 c1p0yA_ not modelled 5.7 17 PDB header:transferase Chain: A: PDB Molecule:ribulose-1,5 bisphosphate carboxylase/oxygenase PDBTitle: crystal structure of the set domain of lsmt bound to2 melysine and adohcy 91 d1phpa_ not modelled 5.6 28 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 92 d1uika1 not modelled 5.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 93 d1wlna1 not modelled 5.5 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 94 d2g1la1 not modelled 5.4 21 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 95 d1m0da_ not modelled 5.3 10 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 96 d1wmha_ not modelled 5.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 97 c2w27A_ not modelled 5.3 8 PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium 98 d1uija1 not modelled 5.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 99 c1vloA_ not modelled 5.1 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0