PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kb4D_

Fold library id	PDB Header	Molecule	Title
c3kb4D_	PDB header: structural genomics, unknown function	Chain: D: PDB Molecule: alr8543 protein;	PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc3 sp. pcc 7120, northeast structural genomics consortium4 target nsr141

Links to external resources
Added to library: Sun Aug 29 07:13:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I T Q S Q E T A I L E S F L E L V K S P Y G N F A S I G K L S H V L N D P D T L Q K V V A V L S L T P Q G K Q A F E D R P X L G K I D L E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L H Q L P N Y T L G Y X Y A D H X I R N Q L T P P P V N E N V N H P F X F L A A H L G E T H D I W H V V T G C D T D K P G E V K L E A F Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T B T T
S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Q L I P D R L F L A L L A K N L L K T A X Y E V E L C E Q I L D G L T Q G W X X G K R A K P L F G I E W N K L W E T P L E E L Q T S L N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S
G G G S
T T
G G G
T T S B T T

. .

Sequence V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	T	Q	S	Q	E	T	A	I	L	E	S	F	L	E	L	V	K	S	P	Y	G	N	F	A	S	I	G	K	L	S	H	V	L	N	D	P	D	T	L	Q	K	V	V	A	V	L	S	L	T	P	Q	G	K	Q	A	F	E	D	R	P	X	L	G	K	I	D	L	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	S		T	T													S													T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	H	Q	L	P	N	Y	T	L	G	Y	X	Y	A	D	H	X	I	R	N	Q	L	T	P	P	P	V	N	E	N	V	N	H	P	F	X	F	L	A	A	H	L	G	E	T	H	D	I	W	H	V	V	T	G	C	D	T	D	K	P	G	E	V	K	L	E	A	F	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S		T	T	B												T	T												S												T									T			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Q	L	I	P	D	R	L	F	L	A	L	L	A	K	N	L	L	K	T	A	X	Y	E	V	E	L	C	E	Q	I	L	D	G	L	T	Q	G	W	X	X	G	K	R	A	K	P	L	F	G	I	E	W	N	K	L	W	E	T	P	L	E	E	L	Q	T	S	L	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T		S																		G	G	G																		S				T	T			G	G	G		T	T	S	B								T	T
	.	.
Sequence	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)