Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	A	R	Y	I	A	I	D	W	G	S	T	N	L	R	A	W	L	Y	Q	G	D	H	C	L	E	S	R	Q	S	E	A	G	V	T	R	L	N	G	K	S	P	A	A	V	L	A	E	V	T	T	D	W	R	E	E	K	T	P
Secondary structure
SS confidence
Disorder		?	?	?	?																								?	?	?	?	?	?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	V	M	A	G	M	V	G	S	N	V	G	W	K	V	A	P	Y	L	S	V	P	A	C	F	S	S	I	G	E	Q	L	T	S	V	G	D	N	I	W	I	I	P	G	L	C	V	S	H	D	D	N	H	N	V	M	R	G	E	E
Secondary structure
SS confidence
Disorder											?	?																																					?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	Q	L	I	G	A	R	A	L	A	P	S	S	L	Y	V	M	P	G	T	H	C	K	W	V	Q	A	D	S	Q	Q	I	N	D	F	R	T	V	M	T	G	E	L	H	H	L	L	L	N	H	S	L	I	G	A	G	L	P	P	Q
Secondary structure
SS confidence
Disorder																																																	?	?			?	?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	N	S	A	D	A	F	T	A	G	L	E	R	G	L	N	T	P	A	I	L	P	Q	L	F	E	V	R	A	S	H	V	L	G	T	L	P	R	E	Q	V	S	E	F	L	S	G	L	L	I	G	A	E	V	A	S	M	R	D	Y
Secondary structure
SS confidence
Disorder																	?		?	?															?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Sequence		V	A	H	Q	H	A	I	T	L	V	A	G	T	S	L	T	A	R	Y	Q	Q	A	F	Q	A	M	G	C	D	V	T	A	V	A	G	D	T	A	F	Q	A	G	I	R	S	I	A	H	A	V	A	N
Secondary structure
SS confidence
Disorder																																																				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nuw chain C Region: 1 - 292 Aligned: 292 Modelled: 291 Confidence: 100.0% Identity: 80% PDB header:transferase Chain: C: PDB Molecule:2-oxo-3-deoxygalactonate kinase; PDBTitle: crystal structure of 2-oxo-3-deoxygalactonate kinase from klebsiella2 pneumoniae Phyre2 PDB 3t69 chain A Region: 4 - 292 Aligned: 289 Modelled: 289 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase; PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti Phyre2 PDB 3gg4 chain B Region: 1 - 65 Aligned: 65 Modelled: 65 Confidence: 96.1% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis Phyre2 PDB 3i8b chain A Region: 1 - 83 Aligned: 83 Modelled: 83 Confidence: 95.9% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis Phyre2 PDB 3hz6 chain A Region: 1 - 83 Aligned: 83 Modelled: 83 Confidence: 95.8% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum Phyre2 PDB 2zf5 chain O Region: 1 - 74 Aligned: 74 Modelled: 74 Confidence: 95.6% Identity: 15% PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon Phyre2 PDB 3gbt chain A Region: 1 - 83 Aligned: 82 Modelled: 81 Confidence: 95.3% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus Phyre2 PDB 2ch5 chain A domain 2 Region: 1 - 71 Aligned: 71 Modelled: 71 Confidence: 95.2% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 3ezw chain D Region: 2 - 74 Aligned: 73 Modelled: 73 Confidence: 94.6% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices Phyre2 PDB 2w40 chain C Region: 1 - 72 Aligned: 71 Modelled: 71 Confidence: 94.6% Identity: 14% PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol Phyre2 PDB 2p3r chain A domain 1 Region: 2 - 74 Aligned: 73 Modelled: 73 Confidence: 94.6% Identity: 16% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Glycerol kinase Phyre2 PDB 3g25 chain B Region: 2 - 65 Aligned: 64 Modelled: 64 Confidence: 94.3% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. Phyre2 PDB 3flc chain X Region: 2 - 65 Aligned: 64 Modelled: 64 Confidence: 94.1% Identity: 22% PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol Phyre2 PDB 1glb chain G Region: 4 - 74 Aligned: 71 Modelled: 71 Confidence: 94.0% Identity: 17% PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase Phyre2 PDB 2d4w chain A Region: 4 - 74 Aligned: 71 Modelled: 71 Confidence: 93.4% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 Phyre2 PDB 2nlx chain A Region: 5 - 83 Aligned: 79 Modelled: 79 Confidence: 93.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase Phyre2 PDB 2dpn chain B Region: 4 - 65 Aligned: 62 Modelled: 62 Confidence: 92.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Phyre2 PDB 3ifr chain B Region: 4 - 83 Aligned: 80 Modelled: 80 Confidence: 91.1% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum Phyre2 PDB 1zc6 chain A domain 1 Region: 1 - 55 Aligned: 55 Modelled: 55 Confidence: 90.8% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 1hux chain A Region: 4 - 264 Aligned: 202 Modelled: 205 Confidence: 90.1% Identity: 16% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 1 c3nuwC_ 2 c3t69A_ 3 c3gg4B_ 4 c3i8bA_ 5 c3hz6A_ 6 c2zf5O_ 7 c3gbtA_ 8 d2ch5a2 9 c3ezwD_ 10 c2w40C_ 11 d2p3ra1 12 c3g25B_ 13 c3flcX_ 14 c1glbG_ 15 c2d4wA_ 16 c2nlxA_ 17 c2dpnB_ 18 c3ifrB_ 19 d1zc6a1 20 d1huxa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nuwC_ 100.0 80 PDB header:transferase Chain: C: PDB Molecule:2-oxo-3-deoxygalactonate kinase; PDBTitle: crystal structure of 2-oxo-3-deoxygalactonate kinase from klebsiella2 pneumoniae 2 c3t69A_ 100.0 34 PDB header:transferase Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase; PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti 3 c3gg4B_ 96.1 12 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 4 c3i8bA_ 95.9 7 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 5 c3hz6A_ 95.8 14 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 6 c2zf5O_ 95.6 15 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 7 c3gbtA_ 95.3 15 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 8 d2ch5a2 95.2 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 9 c3ezwD_ 94.6 18 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 10 c2w40C_ 94.6 14 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 11 d2p3ra1 94.6 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 12 c3g25B_ 94.3 25 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 13 c3flcX_ 94.1 22 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 14 c1glbG_ 94.0 17 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 15 c2d4wA_ 93.4 17 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 16 c2nlxA_ 93.0 15 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 17 c2dpnB_ 92.0 23 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 18 c3ifrB_ 91.1 18 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 19 d1zc6a1 90.8 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 20 d1huxa_ 90.1 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 21 c3h6eB_ not modelled 89.8 23 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 22 d1r59o1 not modelled 89.1 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 23 c1zc6A_ not modelled 89.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 24 c1xupO_ not modelled 88.7 22 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 25 c3bf1C_ not modelled 88.5 13 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 26 c2cgkB_ not modelled 87.3 13 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 27 c3jvpA_ not modelled 86.5 26 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 28 c1zxoB_ not modelled 80.5 14 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 29 d1q18a1 not modelled 78.7 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 30 d1bdga1 not modelled 78.6 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 31 d1bg3a3 not modelled 78.3 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 32 c2v7yA_ not modelled 75.3 33 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 33 c3hm8D_ not modelled 74.6 17 PDB header:transferase Chain: D: PDB Molecule:hexokinase-3; PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3 34 d2ap1a2 not modelled 73.1 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 35 d1ig8a1 not modelled 69.7 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 36 c2qm1D_ not modelled 69.5 19 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 37 c1zbsA_ not modelled 68.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 38 d1czan3 not modelled 67.9 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 39 d2e8aa1 not modelled 67.8 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 40 c1bdgA_ not modelled 66.8 15 PDB header:hexokinase Chain: A: PDB Molecule:hexokinase; PDBTitle: hexokinase from schistosoma mansoni complexed with glucose 41 d1jcea1 not modelled 64.2 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 42 d1bg3a1 not modelled 62.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 43 d3bexa1 not modelled 61.6 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 44 c2v7zA_ not modelled 59.0 21 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 45 c3iucC_ not modelled 59.0 17 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 46 c1ig8A_ not modelled 58.1 31 PDB header:transferase Chain: A: PDB Molecule:hexokinase pii; PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence 47 d1v4sa1 not modelled 57.1 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 48 d1czan1 not modelled 56.5 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 49 c3h1qB_ not modelled 55.1 9 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 50 c2ychA_ not modelled 54.8 22 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 51 d1bupa1 not modelled 54.5 30 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 52 c3d2fC_ not modelled 51.6 15 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 53 c2khoA_ not modelled 51.4 35 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 54 c1dkgD_ not modelled 49.9 32 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 55 d1sz2a1 not modelled 49.0 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 56 c2aa4B_ not modelled 48.4 23 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 57 d1dkgd1 not modelled 47.3 32 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 58 c3gjbA_ not modelled 45.9 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 59 c1hpmA_ not modelled 43.9 23 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 60 c3htvA_ not modelled 42.6 12 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 61 c1xc3A_ not modelled 40.4 8 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 62 c1v4sA_ not modelled 40.3 17 PDB header:transferase Chain: A: PDB Molecule:glucokinase isoform 2; PDBTitle: crystal structure of human glucokinase 63 c1jcgA_ not modelled 39.7 27 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 64 d1vhxa_ not modelled 39.5 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 65 c1qhaA_ not modelled 37.5 17 PDB header:transferase Chain: A: PDB Molecule:protein (hexokinase); PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp 66 d1z6ra2 not modelled 37.0 5 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 67 d2ewsa1 not modelled 36.6 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 68 c1zcjA_ not modelled 36.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase 69 c2ap1A_ not modelled 35.5 12 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 70 c3mcpA_ not modelled 35.2 15 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 71 c3r8eA_ not modelled 34.1 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 72 d1q1ra2 not modelled 33.6 9 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 73 c2gupA_ not modelled 32.3 14 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 74 c3k6jA_ not modelled 32.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:protein f01g10.3, confirmed by transcript evidence; PDBTitle: crystal structure of the dehydrogenase part of multifuctional enzyme 12 from c.elegans 75 c1e4gT_ not modelled 32.1 26 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 76 d2pv7a2 not modelled 31.6 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 77 c3zqoK_ not modelled 30.6 29 PDB header:dna-binding protein Chain: K: PDB Molecule:terminase small subunit; PDBTitle: crystal structure of the small terminase oligomerization2 core domain from a spp1-like bacteriophage (crystal form 3) 78 c2dwcB_ not modelled 30.4 24 PDB header:transferase Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp 79 c3aapA_ not modelled 30.4 21 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i; PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila 80 d2aa4a1 not modelled 29.5 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 81 c1dxyA_ not modelled 29.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:d-2-hydroxyisocaproate dehydrogenase; PDBTitle: structure of d-2-hydroxyisocaproate dehydrogenase 82 d1z05a3 not modelled 28.8 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 83 c2ch5D_ not modelled 28.8 13 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 84 c3bazA_ not modelled 28.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyphenylpyruvate reductase; PDBTitle: structure of hydroxyphenylpyruvate reductase from coleus blumei in2 complex with nadp+ 85 d2gupa1 not modelled 28.6 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 86 d1kjqa2 not modelled 28.3 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 87 c1mwmA_ not modelled 26.6 26 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 88 c2d3tB_ not modelled 26.5 7 PDB header:lyase, oxidoreductase/transferase Chain: B: PDB Molecule:fatty oxidation complex alpha subunit; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v 89 c2g1uA_ not modelled 25.3 15 PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution 90 d2hmva1 not modelled 24.1 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 91 d1d7ya2 not modelled 23.9 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 92 c2j6iC_ not modelled 23.4 16 PDB header:oxidoreductase Chain: C: PDB Molecule:formate dehydrogenase; PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant 93 d2hoea3 not modelled 22.0 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 94 d1kyqa1 not modelled 22.0 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like 95 c3vgkB_ not modelled 20.2 13 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 96 c2wtbA_ not modelled 20.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:fatty acid multifunctional protein (atmfp2); PDBTitle: arabidopsis thaliana multifuctional protein, mfp2 97 d2d1pa1 not modelled 20.1 4 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 98 c2x58B_ not modelled 20.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: the crystal structure of mfe1 liganded with coa 99 c1z05A_ not modelled 19.6 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0