Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	P	E	Q	L	E	E	Q	R	E	E	T	R	L	I	I	E	E	L	L	E	D	G	S	D	P	D	A	L	Y	T	I	E	H	H	L	S	A	D	D	L	E	T	L	E	K	A	A	V	E	A	F	K	L	G	Y	E	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	D	P	E	E	L	E	V	E	D	G	D	I	V	I	C	C	D	I	L	S	E	C	A	L	N	A	D	L	I	D	A	Q	V	E	Q	L	M	T	L	A	E	K	F	D	V	E	Y	D	G	W	G	T	Y	F	E	D	P	N	G
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?												?	?	?		?	?																															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Sequence		E	D	G	D	D	E	D	F	V	D	E	D	D	D	G	V	R	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?			?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nxi chain A Region: 3 - 116 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 65% Fold: Ferredoxin-like Superfamily: Hypothetical protein VC0424 Family: Hypothetical protein VC0424 Phyre2 PDB 1j5y chain A domain 2 Region: 36 - 62 Aligned: 27 Modelled: 27 Confidence: 47.4% Identity: 33% Fold: HPr-like Superfamily: Putative transcriptional regulator TM1602, C-terminal domain Family: Putative transcriptional regulator TM1602, C-terminal domain Phyre2 PDB 3tqx chain A Region: 4 - 106 Aligned: 101 Modelled: 103 Confidence: 35.6% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii Phyre2 PDB 1fc4 chain A Region: 2 - 105 Aligned: 102 Modelled: 102 Confidence: 28.6% Identity: 19% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 3hqt chain B Region: 4 - 108 Aligned: 102 Modelled: 105 Confidence: 27.5% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Phyre2 PDB 2p7p chain B Region: 25 - 120 Aligned: 50 Modelled: 50 Confidence: 26.9% Identity: 24% PDB header:metal binding protein, hydrolase Chain: B: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of genomically encoded fosfomycin resistance2 protein, fosx, from listeria monocytogenes complexed with mn(ii) and3 sulfate ion Phyre2 PDB 3qwu chain A Region: 35 - 81 Aligned: 46 Modelled: 47 Confidence: 26.4% Identity: 11% PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. Phyre2 PDB 3a2b chain A Region: 4 - 105 Aligned: 100 Modelled: 101 Confidence: 25.5% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine Phyre2 PDB 2c0r chain A domain 1 Region: 4 - 105 Aligned: 95 Modelled: 99 Confidence: 24.7% Identity: 15% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 2w8w chain A Region: 4 - 106 Aligned: 101 Modelled: 103 Confidence: 22.1% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser Phyre2 PDB 2fhf chain A domain 3 Region: 105 - 115 Aligned: 11 Modelled: 11 Confidence: 20.5% Identity: 18% Fold: Prealbumin-like Superfamily: Starch-binding domain-like Family: PUD-like Phyre2 PDB 2x48 chain B Region: 38 - 66 Aligned: 29 Modelled: 29 Confidence: 18.7% Identity: 24% PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 Phyre2 PDB 2je6 chain I domain 2 Region: 110 - 120 Aligned: 11 Modelled: 11 Confidence: 18.2% Identity: 27% Fold: Barrel-sandwich hybrid Superfamily: Ribosomal L27 protein-like Family: ECR1 N-terminal domain-like Phyre2 PDB 3qm2 chain A Region: 5 - 105 Aligned: 94 Modelled: 94 Confidence: 16.8% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium Phyre2 PDB 3hz7 chain A Region: 12 - 81 Aligned: 57 Modelled: 70 Confidence: 16.3% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a Phyre2 PDB 1o59 chain A domain 1 Region: 108 - 113 Aligned: 6 Modelled: 6 Confidence: 16.3% Identity: 83% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Allantoicase repeat Phyre2 PDB 1r9c chain A Region: 85 - 120 Aligned: 36 Modelled: 36 Confidence: 15.8% Identity: 19% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Antibiotic resistance proteins Phyre2 PDB 1zsw chain A Region: 36 - 61 Aligned: 26 Modelled: 26 Confidence: 14.8% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family Phyre2 PDB 1z64 chain A Region: 110 - 115 Aligned: 6 Modelled: 6 Confidence: 14.6% Identity: 67% PDB header:antimicrobial protein Chain: A: PDB Molecule:pleruocidin; PDBTitle: nmr solution structure of pleurocidin in dpc micelles Phyre2 PDB 2j44 chain A domain 2 Region: 105 - 115 Aligned: 11 Modelled: 11 Confidence: 14.5% Identity: 18% Fold: Prealbumin-like Superfamily: Starch-binding domain-like Family: PUD-like Phyre2 1 d1nxia_ 2 d1j5ya2 3 c3tqxA_ 4 d1fc4a_ 5 c3hqtB_ 6 c2p7pB_ 7 c3qwuA_ 8 c3a2bA_ 9 d2c0ra1 10 c2w8wA_ 11 d2fhfa3 12 c2x48B_ 13 d2je6i2 14 c3qm2A_ 15 c3hz7A_ 16 d1o59a1 17 d1r9ca_ 18 c1zswA_ 19 c1z64A_ 20 d2j44a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nxia_ 100.0 65 Fold:Ferredoxin-like Superfamily:Hypothetical protein VC0424 Family:Hypothetical protein VC0424 2 d1j5ya2 47.4 33 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 3 c3tqxA_ 35.6 13 PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii 4 d1fc4a_ 28.6 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 5 c3hqtB_ 27.5 13 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 6 c2p7pB_ 26.9 24 PDB header:metal binding protein, hydrolase Chain: B: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of genomically encoded fosfomycin resistance2 protein, fosx, from listeria monocytogenes complexed with mn(ii) and3 sulfate ion 7 c3qwuA_ 26.4 11 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 8 c3a2bA_ 25.5 17 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 9 d2c0ra1 24.7 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 10 c2w8wA_ 22.1 12 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 11 d2fhfa3 20.5 18 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 12 c2x48B_ 18.7 24 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 13 d2je6i2 18.2 27 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:ECR1 N-terminal domain-like 14 c3qm2A_ 16.8 9 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium 15 c3hz7A_ 16.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 16 d1o59a1 16.3 83 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Allantoicase repeat 17 d1r9ca_ 15.8 19 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 18 c1zswA_ 14.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family 19 c1z64A_ 14.6 67 PDB header:antimicrobial protein Chain: A: PDB Molecule:pleruocidin; PDBTitle: nmr solution structure of pleurocidin in dpc micelles 20 d2j44a2 14.5 18 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 21 d2j43a1 not modelled 13.8 9 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 22 c1w1nA_ not modelled 13.7 27 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 23 c2qv5A_ not modelled 13.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 24 c1j5yA_ not modelled 12.5 33 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family; PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution 25 d2j73a1 not modelled 12.4 45 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 26 c2j43A_ not modelled 12.2 18 PDB header:carbohydrate-binding module Chain: A: PDB Molecule:spydx; PDBTitle: alpha-glucan recognition by family 41 carbohydrate-binding2 modules from streptococcal virulence factors 27 c2ke4A_ not modelled 11.8 45 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4 28 d2j43a2 not modelled 11.8 25 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 29 c3m2oB_ not modelled 11.7 36 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein; PDBTitle: crystal structure of a putative glyoxalase/bleomycin resistance2 protein from rhodopseudomonas palustris cga009 30 c3dxvA_ not modelled 11.6 16 PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae 31 d2j44a1 not modelled 11.4 27 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 32 d1utaa_ not modelled 11.2 14 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 33 c2j44A_ not modelled 11.2 38 PDB header:carbohydrate-binding module Chain: A: PDB Molecule:alkaline amylopullulanase; PDBTitle: alpha-glucan binding by a streptococcal virulence factor 34 d1mqta_ not modelled 11.0 57 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 35 d1bs0a_ not modelled 10.7 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 36 d1x9ba_ not modelled 10.1 16 Fold:Protozoan pheromone-like Superfamily:Hypothetical membrane protein Ta0354, soluble domain Family:Hypothetical membrane protein Ta0354, soluble domain 37 c2f06B_ not modelled 10.1 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 38 d1oopa_ not modelled 9.9 57 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 39 c1z7s1_ not modelled 9.7 26 PDB header:virus Chain: 1: PDB Molecule:human coxsackievirus a21; PDB Fragment:viral protein 1; PDBTitle: the crystal structure of coxsackievirus a21 40 c1wv9B_ not modelled 8.9 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8 41 c1zbe1_ not modelled 8.7 57 PDB header:virus Chain: 1: PDB Molecule:coat protein vp1; PDBTitle: foot-and mouth disease virus serotype a1061 42 d1o59a2 not modelled 8.6 80 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Allantoicase repeat 43 c2wff1_ not modelled 8.5 57 PDB header:virus Chain: 1: PDB Molecule:p1; PDB Fragment:capsid protein vp4, residues 1-80 PDBTitle: equine rhinitis a virus 44 d1d4m1_ not modelled 7.8 57 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 45 c2jg6A_ not modelled 7.8 6 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 46 c2lciA_ not modelled 7.7 33 PDB header:de novo protein Chain: A: PDB Molecule:protein or36; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target) 47 d1jc4a_ not modelled 7.6 12 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Methylmalonyl-CoA epimerase 48 c2rbbB_ not modelled 7.6 18 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase family enzyme from burkholderia phytofirmans psjn 49 d1pvc1_ not modelled 7.6 25 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 50 c2gcfA_ not modelled 7.4 14 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 51 c3sviA_ not modelled 7.4 36 PDB header:signaling protein Chain: A: PDB Molecule:type iii effector hopab2; PDBTitle: structure of the pto-binding domain of hoppmal generated by limited2 thermolysin digestion 52 d1rhi1_ not modelled 7.4 43 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 53 c1sg3A_ not modelled 7.4 56 PDB header:hydrolase Chain: A: PDB Molecule:allantoicase; PDBTitle: structure of allantoicase 54 d1bjna_ not modelled 7.3 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 55 d2pc6a2 not modelled 7.2 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 56 c2kyzA_ not modelled 7.2 19 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 57 d2qifa1 not modelled 7.2 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 58 d2f1fa1 not modelled 7.2 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 59 c2k7wB_ not modelled 7.1 19 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: bax activation is initiated at a novel interaction site 60 c2rk0B_ not modelled 7.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase domain; PDBTitle: crystal structure of glyoxylase/bleomycin resistance2 protein/dioxygenase domain from frankia sp. ean1pec 61 d1xqaa_ not modelled 7.0 21 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 62 d1eah1_ not modelled 7.0 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 63 d1qqp1_ not modelled 6.9 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 64 c1ik9C_ not modelled 6.8 50 PDB header:gene regulation/ligase Chain: C: PDB Molecule:dna ligase iv; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 65 d1zhva2 not modelled 6.8 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 66 d1cov1_ not modelled 6.8 57 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 67 d2ajta2 not modelled 6.7 10 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:AraA N-terminal and middle domain-like 68 c1fi8E_ not modelled 6.6 57 PDB header:hydrolase/hydrolase inhibitor Chain: E: PDB Molecule:ecotin; PDBTitle: rat granzyme b [n66q] complexed to ecotin [81-84 iepd] 69 c3hgkE_ not modelled 6.6 22 PDB header:transferase Chain: E: PDB Molecule:effector protein hopab2; PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto 70 c2r6uB_ not modelled 6.6 45 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of gene product rha04853 from rhodococcus sp. rha1 71 c3eyiB_ not modelled 6.6 41 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 72 c2jz7A_ not modelled 6.5 28 PDB header:selenium-binding protein Chain: A: PDB Molecule:selenium binding protein; PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii 73 d1zyea1 not modelled 6.5 36 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 74 c3q87B_ not modelled 6.4 11 PDB header:transferase activator/transferase Chain: B: PDB Molecule:n6 adenine specific dna methylase; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 75 c3kolA_ not modelled 6.4 64 PDB header:metal binding protein Chain: A: PDB Molecule:glyoxalase/bleomycin resistance PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme 76 d2e7ja1 not modelled 6.4 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like 77 d1aym1_ not modelled 6.0 43 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 78 c3oajA_ not modelled 5.9 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo; PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168 79 c2nl9B_ not modelled 5.9 19 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: crystal structure of the mcl-1:bim bh3 complex 80 d1sqia2 not modelled 5.9 15 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 81 c3sk1C_ not modelled 5.8 36 PDB header:griseoluteate-binding protein Chain: C: PDB Molecule:ehpr; PDBTitle: crystal structure of phenazine resistance protein ehpr from2 enterobacter agglomerans (erwinia herbicola, pantoea agglomerans)3 eh1087, apo form 82 c2l69A_ not modelled 5.8 27 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 83 d1elua_ not modelled 5.8 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 84 d1tme1_ not modelled 5.8 25 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 85 c2cosA_ not modelled 5.7 36 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 86 d2ggpb1 not modelled 5.5 10 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 87 c1yg0A_ not modelled 5.5 22 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 88 c3h25A_ not modelled 5.5 18 PDB header:replication/dna Chain: A: PDB Molecule:replication protein b; PDBTitle: crystal structure of the catalytic domain of primase repb' in complex2 with initiator dna 89 d1e2ya_ not modelled 5.5 36 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 90 d1kn0a_ not modelled 5.4 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 91 c3q1jA_ not modelled 5.3 17 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 92 c3rriB_ not modelled 5.3 18 PDB header:metal binding protein Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of glyoxalase/bleomycin resistance2 protein/dioxygenase from alicyclobacillus acidocaldarius 93 d1t47a2 not modelled 5.2 11 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 94 d1k4na_ not modelled 5.2 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein YecM (EC4020) 95 c3e0rC_ not modelled 5.2 11 PDB header:hydrolase Chain: C: PDB Molecule:c3-degrading proteinase (cppa protein); PDBTitle: crystal structure of cppa protein from streptococcus pneumoniae tigr4 96 d1ug7a_ not modelled 5.2 50 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 97 d1tmf1_ not modelled 5.1 15 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 98 c2f1fA_ not modelled 5.1 13 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 99 d1kona_ not modelled 5.0 20 Fold:YebC-like Superfamily:YebC-like Family:YebC-like

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0