Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45581
DateThu Jan 5 12:03:27 GMT 2012
Unique Job ID7e076a52e8988fd8

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3a1yF_
Top template information
PDB header:ribosomal protein
Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p);
PDBTitle: the structure of protein complex
Confidence and coverage
Confidence: 50.6% Coverage: 13%
27 residues ( 13% of your sequence) have been modelled with 50.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEK
Secondary structure 










































SS confidence 



























































Disorder  ????????????????????
?
???
???
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?





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   .........70.........80.........90.........100.........110.........120
Sequence  GRHDQLLTALRALLLSRKNPFGDIKSDGTVQTALENLGLGEGAKLNAATATLGRTGFIAI
Secondary structure 






























SS confidence 



























































Disorder 













?????????????













????????????????

?
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   .........130.........140.........150.........160.........170.........180
Sequence  PVMIGGIEQSVIIQWGWNAAKASASGGDGNTVVFPVAFNNACVAVVANYDNVSAPINAVA
Secondary structure 









































SS confidence 



























































Disorder  ??????





?
??????????????
?






?
?








??

???
???
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   .........190.........200.........
Sequence  TGGYTTTSFLLRCAAQTGSYYYNWIAIGY
Secondary structure 











SS confidence 




























Disorder  ????????
















????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3a1y chain F

3D model

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 50.6%
Identity: 37%
PDB header:ribosomal protein
Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p);
PDBTitle: the structure of protein complex

Phyre2

PDB 3trk chain A

3D model

Region: 47 - 71
Aligned: 25
Modelled: 25
Confidence: 46.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease

Phyre2

PDB 1m6y chain A domain 1

3D model

Region: 37 - 72
Aligned: 34
Modelled: 36
Confidence: 41.3%
Identity: 18%
Fold: SAM domain-like
Superfamily: Putative methyltransferase TM0872, insert domain
Family: Putative methyltransferase TM0872, insert domain

Phyre2

PDB 1sgl chain A

3D model

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 40.3%
Identity: 11%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2

PDB 1ioo chain A

3D model

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 39.4%
Identity: 7%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2

PDB 1or4 chain A

3D model

Region: 35 - 75
Aligned: 39
Modelled: 41
Confidence: 36.5%
Identity: 18%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

PDB 1bol chain A

3D model

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 33.6%
Identity: 7%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2

PDB 2jeu chain A

3D model

Region: 37 - 82
Aligned: 44
Modelled: 46
Confidence: 27.4%
Identity: 27%
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein e2;
PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction

Phyre2

PDB 1wg8 chain A domain 1

3D model

Region: 37 - 72
Aligned: 33
Modelled: 36
Confidence: 26.7%
Identity: 18%
Fold: SAM domain-like
Superfamily: Putative methyltransferase TM0872, insert domain
Family: Putative methyltransferase TM0872, insert domain

Phyre2

PDB 3d3z chain A

3D model

Region: 47 - 72
Aligned: 26
Modelled: 26
Confidence: 25.7%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:actibind;
PDBTitle: crystal structure of actibind a t2 rnase

Phyre2

PDB 1k32 chain A domain 4

3D model

Region: 51 - 79
Aligned: 29
Modelled: 29
Confidence: 24.5%
Identity: 38%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Tail specific protease, catalytic domain

Phyre2

PDB 2w1o chain A

3D model

Region: 44 - 71
Aligned: 28
Modelled: 28
Confidence: 21.4%
Identity: 11%
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2

Phyre2

PDB 1ev0 chain A

3D model

Region: 38 - 53
Aligned: 16
Modelled: 16
Confidence: 20.6%
Identity: 19%
Fold: Cell division protein MinE topological specificity domain
Superfamily: Cell division protein MinE topological specificity domain
Family: Cell division protein MinE topological specificity domain

Phyre2

PDB 2q0o chain C

3D model

Region: 44 - 59
Aligned: 16
Modelled: 16
Confidence: 20.4%
Identity: 38%
PDB header:transcription
Chain: C: PDB Molecule:probable transcriptional repressor tram;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing

Phyre2

PDB 3iz5 chain W

3D model

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 19.9%
Identity: 22%
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Phyre2

PDB 2rch chain A

3D model

Region: 36 - 66
Aligned: 31
Modelled: 31
Confidence: 19.0%
Identity: 26%
PDB header:lyase
Chain: A: PDB Molecule:cytochrome p450 74a;
PDBTitle: crystal structure of arabidopsis thaliana allene oxide synthase (aos,2 cytochrome p450 74a, cyp74a) complexed with 13(s)-hod at 1.85 a3 resolution

Phyre2

PDB 3izc chain W

3D model

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 17.8%
Identity: 22%
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Phyre2

PDB 1r6n chain A

3D model

Region: 37 - 72
Aligned: 34
Modelled: 36
Confidence: 17.5%
Identity: 18%
Fold: E2 regulatory, transactivation domain
Superfamily: E2 regulatory, transactivation domain
Family: E2 regulatory, transactivation domain

Phyre2

PDB 1dix chain A

3D model

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 17.4%
Identity: 11%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2

PDB 2kxo chain A

3D model

Region: 35 - 62
Aligned: 27
Modelled: 28
Confidence: 17.1%
Identity: 19%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division topological specificity factor;
PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae

Phyre2
1

c3a1yF_
2

c3trkA_
3

d1m6ya1
4

d1sgla_
5

d1iooa_
6

d1or4a_
7

d1bola_
8

c2jeuA_
9

d1wg8a1
10

c3d3zA_
11

d1k32a4
12

c2w1oA_
13

d1ev0a_
14

c2q0oC_
15

c3iz5w_
16

c2rchA_
17

c3izcw_
18

d1r6na_
19

d1dixa_
20

c2kxoA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3a1yF_



50.6 37 PDB header:ribosomal protein
Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p);
PDBTitle: the structure of protein complex
2c3trkA_



46.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
3d1m6ya1



41.3 18 Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
4d1sgla_



40.3 11 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
5d1iooa_



39.4 7 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
6d1or4a_



36.5 18 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
7d1bola_



33.6 7 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
8c2jeuA_



27.4 27 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein e2;
PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction
9d1wg8a1



26.7 18 Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
10c3d3zA_



25.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:actibind;
PDBTitle: crystal structure of actibind a t2 rnase
11d1k32a4



24.5 38 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Tail specific protease, catalytic domain
12c2w1oA_



21.4 11 PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
13d1ev0a_



20.6 19 Fold:Cell division protein MinE topological specificity domain
Superfamily:Cell division protein MinE topological specificity domain
Family:Cell division protein MinE topological specificity domain
14c2q0oC_



20.4 38 PDB header:transcription
Chain: C: PDB Molecule:probable transcriptional repressor tram;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
15c3iz5w_



19.9 22 PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
16c2rchA_



19.0 26 PDB header:lyase
Chain: A: PDB Molecule:cytochrome p450 74a;
PDBTitle: crystal structure of arabidopsis thaliana allene oxide synthase (aos,2 cytochrome p450 74a, cyp74a) complexed with 13(s)-hod at 1.85 a3 resolution
17c3izcw_



17.8 22 PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
18d1r6na_



17.5 18 Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
19d1dixa_



17.4 11 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
20c2kxoA_



17.1 19 PDB header:cell cycle
Chain: A: PDB Molecule:cell division topological specificity factor;
PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae
21c2w31A_



not modelled 16.7 15 PDB header:oxygen transport
Chain: A: PDB Molecule:globin;
PDBTitle: globin domain of geobacter sulfurreducens globin-coupled2 sensor
22d1jy5a_



not modelled 16.2 14 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
23c1n6dE_



not modelled 15.5 38 PDB header:hydrolase
Chain: E: PDB Molecule:tricorn protease;
PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative
24c1k32E_



not modelled 15.5 38 PDB header:hydrolase
Chain: E: PDB Molecule:tricorn protease;
PDBTitle: crystal structure of the tricorn protease
25c1tueG_



not modelled 15.4 15 PDB header:replication
Chain: G: PDB Molecule:regulatory protein e2;
PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2
26d1tueb_



not modelled 15.3 15 Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
27d2nnua1



not modelled 15.0 15 Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
28d1iyba_



not modelled 14.4 14 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
29c1vd3A_



not modelled 12.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump
30d1faoa_



not modelled 11.8 15 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
31c1faoA_



not modelled 11.8 15 PDB header:signaling protein
Chain: A: PDB Molecule:dual adaptor of phosphotyrosine and 3-
PDBTitle: structure of the pleckstrin homology domain from2 dapp1/phish in complex with inositol 1,3,4,5-3 tetrakisphosphate
32c1m6yA_



not modelled 11.4 17 PDB header:transferase
Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw;
PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah
33d2p5ka1



not modelled 11.4 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
34c3uo9B_



not modelled 10.9 15 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial;
PDBTitle: crystal structure of human gac in complex with glutamate and bptes
35d1wsca1



not modelled 10.6 18 Fold:AMMECR1-like
Superfamily:AMMECR1-like
Family:AMMECR1-like
36c3ayhA_



not modelled 10.5 13 PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9;
PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii
37d1aoya_



not modelled 10.3 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
38c3b73A_



not modelled 10.3 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phih1 repressor-like protein;
PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui
39c1b4aA_



not modelled 10.2 29 PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
40d1xdza_



not modelled 10.1 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
41d1f9na1



not modelled 10.1 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
42c2p0vA_



not modelled 10.0 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58
43d2p0va1



not modelled 10.0 24 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
44d1v9va1



not modelled 9.7 19 Fold:Bromodomain-like
Superfamily:MAST3 pre-PK domain-like
Family:MAST3 pre-PK domain-like
45d2nvpa1



not modelled 9.3 33 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
46d1b4aa1



not modelled 9.2 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
47c3ereD_



not modelled 9.1 36 PDB header:dna binding protein/dna
Chain: D: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
48d2nn5a1



not modelled 8.6 24 Fold:TBP-like
Superfamily:Bet v1-like
Family:AHSA1 domain
49c2kxwB_



not modelled 8.3 50 PDB header:calcium-binding protein/metal transport
Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha;
PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2
50d1eo0a_



not modelled 7.8 21 Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
51c2dymE_



not modelled 7.8 8 PDB header:protein turnover/protein turnover
Chain: E: PDB Molecule:autophagy protein 5;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
52c3ivuB_



not modelled 7.6 18 PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
53c3r9jD_



not modelled 7.6 19 PDB header:cell cycle,hydrolase/cell cycle
Chain: D: PDB Molecule:cell division topological specificity factor;
PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
54d2c35a1



not modelled 7.4 17 Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNA polymerase II subunit RBP4 (RpoF)
55c3ss4C_



not modelled 7.4 15 PDB header:hydrolase
Chain: C: PDB Molecule:glutaminase c;
PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form
56c3htuE_



not modelled 7.2 20 PDB header:protein transport
Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: crystal structure of the human vps25-vps20 subcomplex
57d2etha1



not modelled 6.7 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
58c2q9rA_



not modelled 6.6 29 PDB header:unknown function
Chain: A: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution
59c3izct_



not modelled 6.5 25 PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
60c3lvuB_



not modelled 6.5 13 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
61d1wjta_



not modelled 6.4 23 Fold:N-cbl like
Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
62d2c0sa1



not modelled 6.4 38 Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
63c3v4gA_



not modelled 6.3 23 PDB header:dna binding protein
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
64c2kwuA_



not modelled 6.3 38 PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
65d1zq7a1



not modelled 6.3 19 Fold:AMMECR1-like
Superfamily:AMMECR1-like
Family:AMMECR1-like
66d2ea9a1



not modelled 6.3 42 Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
67d1wfya_



not modelled 6.0 39 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
68d2h28a1



not modelled 6.0 39 Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
69c2wqmA_



not modelled 5.8 14 PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase nek7;
PDBTitle: structure of apo human nek7
70d2dy1a4



not modelled 5.8 31 Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
71c1wlzD_



not modelled 5.6 20 PDB header:unknown function
Chain: D: PDB Molecule:cap-binding protein complex interacting protein
PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
72d1wlza1



not modelled 5.6 20 Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
73d1gh6a_



not modelled 5.6 15 Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
74d2fcea1



not modelled 5.6 25 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
75d1iira_



not modelled 5.6 26 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
76d1mw7a_



not modelled 5.6 23 Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
77d1ucda_



not modelled 5.5 11 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
78d2inwa1



not modelled 5.5 44 Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
79c2ckzC_



not modelled 5.3 21 PDB header:transferase
Chain: C: PDB Molecule:dna-directed rna polymerase iii 18 kd
PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25.
80c2k42A_



not modelled 5.3 11 PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
81d2nxpa1



not modelled 5.2 10 Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
82c2p6pB_



not modelled 5.2 15 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
83c1wg8B_



not modelled 5.1 18 PDB header:transferase
Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent
PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0