Phyre 2 alignment of P45581 with c3trkA_

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Job Description | P45581
Confidence | 46.47% | Date | Thu Jan 5 12:03:27 GMT 2012
Rank | 2 | Aligned Residues | 25
% Identity | 24% | Template | c3trkA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:nonstructural polyprotein; | PDBTitle: structure of the chikungunya virus nsp2 protease
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | .
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Query Sequence |  | L | C | S | V | V | E | A | S | G | A | S | L | E | K | G | R | H | D | Q | L | L | T | A | L | R
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Template Sequence |  | L | V | P | I | L | E | T | A | G | I | K | L | N | D | R | Q | W | S | Q | I | I | Q | A | F | K
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1018 | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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