Phyre 2 Results for P45581

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P45581
Date | Thu Jan 5 12:03:27 GMT 2012
Unique Job ID | 7e076a52e8988fd8

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3a1yF_
Top template information
PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex
Confidence and coverage
Confidence: | 50.6% | Coverage: | 13%
27 residues ( 13% of your sequence) have been modelled with 50.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | H | R | I | D | T | K | T | A | Q | K | D | K | F | G | A | G | K | N | G | F | T | R | G | N | P | Q | T | G | T | P | A | T | D | L | D | D | D | Y | F | D | M | L | Q | E | E | L | C | S | V | V | E | A | S | G | A | S | L | E | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  | ? | ? | ? |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | R | H | D | Q | L | L | T | A | L | R | A | L | L | L | S | R | K | N | P | F | G | D | I | K | S | D | G | T | V | Q | T | A | L | E | N | L | G | L | G | E | G | A | K | L | N | A | A | T | A | T | L | G | R | T | G | F | I | A | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | P | V | M | I | G | G | I | E | Q | S | V | I | I | Q | W | G | W | N | A | A | K | A | S | A | S | G | G | D | G | N | T | V | V | F | P | V | A | F | N | N | A | C | V | A | V | V | A | N | Y | D | N | V | S | A | P | I | N | A | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? | ? | ? |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | .
Sequence |  | T | G | G | Y | T | T | T | S | F | L | L | R | C | A | A | Q | T | G | S | Y | Y | Y | N | W | I | A | I | G | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3a1yF_ |

### PDB 3a1y chain F

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 50.6%
Identity: 37%
PDB header:ribosomal protein
Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p);
PDBTitle: the structure of protein complex

Phyre2
2 |
| c3trkA_ |

### PDB 3trk chain A

Region: 47 - 71
Aligned: 25
Modelled: 25
Confidence: 46.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease

Phyre2
3 |
| d1m6ya1 |

### PDB 1m6y chain A domain 1

Region: 37 - 72
Aligned: 34
Modelled: 36
Confidence: 41.3%
Identity: 18%
Fold: SAM domain-like
Superfamily: Putative methyltransferase TM0872, insert domain
Family: Putative methyltransferase TM0872, insert domain

Phyre2
4 |
| d1sgla_ |

### PDB 1sgl chain A

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 40.3%
Identity: 11%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
5 |
| d1iooa_ |

### PDB 1ioo chain A

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 39.4%
Identity: 7%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
6 |
| d1or4a_ |

### PDB 1or4 chain A

Region: 35 - 75
Aligned: 39
Modelled: 41
Confidence: 36.5%
Identity: 18%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2
7 |
| d1bola_ |

### PDB 1bol chain A

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 33.6%
Identity: 7%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
8 |
| c2jeuA_ |

### PDB 2jeu chain A

Region: 37 - 82
Aligned: 44
Modelled: 46
Confidence: 27.4%
Identity: 27%
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein e2;
PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction

Phyre2
9 |
| d1wg8a1 |

### PDB 1wg8 chain A domain 1

Region: 37 - 72
Aligned: 33
Modelled: 36
Confidence: 26.7%
Identity: 18%
Fold: SAM domain-like
Superfamily: Putative methyltransferase TM0872, insert domain
Family: Putative methyltransferase TM0872, insert domain

Phyre2
10 |
| c3d3zA_ |

### PDB 3d3z chain A

Region: 47 - 72
Aligned: 26
Modelled: 26
Confidence: 25.7%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:actibind;
PDBTitle: crystal structure of actibind a t2 rnase

Phyre2
11 |
| d1k32a4 |

### PDB 1k32 chain A domain 4

Region: 51 - 79
Aligned: 29
Modelled: 29
Confidence: 24.5%
Identity: 38%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Tail specific protease, catalytic domain

Phyre2
12 |
| c2w1oA_ |

### PDB 2w1o chain A

Region: 44 - 71
Aligned: 28
Modelled: 28
Confidence: 21.4%
Identity: 11%
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2

Phyre2
13 |
| d1ev0a_ |

### PDB 1ev0 chain A

Region: 38 - 53
Aligned: 16
Modelled: 16
Confidence: 20.6%
Identity: 19%
Fold: Cell division protein MinE topological specificity domain
Superfamily: Cell division protein MinE topological specificity domain
Family: Cell division protein MinE topological specificity domain

Phyre2
14 |
| c2q0oC_ |

### PDB 2q0o chain C

Region: 44 - 59
Aligned: 16
Modelled: 16
Confidence: 20.4%
Identity: 38%
PDB header:transcription
Chain: C: PDB Molecule:probable transcriptional repressor tram;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing

Phyre2
15 |
| c3iz5w_ |

### PDB 3iz5 chain W

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 19.9%
Identity: 22%
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Phyre2
16 |
| c2rchA_ |

### PDB 2rch chain A

Region: 36 - 66
Aligned: 31
Modelled: 31
Confidence: 19.0%
Identity: 26%
PDB header:lyase
Chain: A: PDB Molecule:cytochrome p450 74a;
PDBTitle: crystal structure of arabidopsis thaliana allene oxide synthase (aos,2 cytochrome p450 74a, cyp74a) complexed with 13(s)-hod at 1.85 a3 resolution

Phyre2
17 |
| c3izcw_ |

### PDB 3izc chain W

Region: 45 - 71
Aligned: 27
Modelled: 27
Confidence: 17.8%
Identity: 22%
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Phyre2
18 |
| d1r6na_ |

### PDB 1r6n chain A

Region: 37 - 72
Aligned: 34
Modelled: 36
Confidence: 17.5%
Identity: 18%
Fold: E2 regulatory, transactivation domain
Superfamily: E2 regulatory, transactivation domain
Family: E2 regulatory, transactivation domain

Phyre2
19 |
| d1dixa_ |

### PDB 1dix chain A

Region: 47 - 74
Aligned: 28
Modelled: 28
Confidence: 17.4%
Identity: 11%
Fold: Ribonuclease Rh-like
Superfamily: Ribonuclease Rh-like
Family: Ribonuclease Rh-like

Phyre2
20 |
| c2kxoA_ |

### PDB 2kxo chain A

Region: 35 - 62
Aligned: 27
Modelled: 28
Confidence: 17.1%
Identity: 19%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division topological specificity factor;
PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3a1yF_ |
|  | 50.6 | 37 | PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex
2 | c3trkA_ |
|  | 46.5 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease
3 | d1m6ya1 |
|  | 41.3 | 18 | Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain
4 | d1sgla_ |
|  | 40.3 | 11 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
5 | d1iooa_ |
|  | 39.4 | 7 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
6 | d1or4a_ |
|  | 36.5 | 18 | Fold:Globin-like Superfamily:Globin-like Family:Globins
7 | d1bola_ |
|  | 33.6 | 7 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
8 | c2jeuA_ |
|  | 27.4 | 27 | PDB header:transcription Chain: A: PDB Molecule:regulatory protein e2; PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction
9 | d1wg8a1 |
|  | 26.7 | 18 | Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain
10 | c3d3zA_ |
|  | 25.7 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase
11 | d1k32a4 |
|  | 24.5 | 38 | Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Tail specific protease, catalytic domain
12 | c2w1oA_ |
|  | 21.4 | 11 | PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2
13 | d1ev0a_ |
|  | 20.6 | 19 | Fold:Cell division protein MinE topological specificity domain Superfamily:Cell division protein MinE topological specificity domain Family:Cell division protein MinE topological specificity domain
14 | c2q0oC_ |
|  | 20.4 | 38 | PDB header:transcription Chain: C: PDB Molecule:probable transcriptional repressor tram; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
15 | c3iz5w_ |
|  | 19.9 | 22 | PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
16 | c2rchA_ |
|  | 19.0 | 26 | PDB header:lyase Chain: A: PDB Molecule:cytochrome p450 74a; PDBTitle: crystal structure of arabidopsis thaliana allene oxide synthase (aos,2 cytochrome p450 74a, cyp74a) complexed with 13(s)-hod at 1.85 a3 resolution
17 | c3izcw_ |
|  | 17.8 | 22 | PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
18 | d1r6na_ |
|  | 17.5 | 18 | Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain
19 | d1dixa_ |
|  | 17.4 | 11 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
20 | c2kxoA_ |
|  | 17.1 | 19 | PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae
21 | c2w31A_ |
| not modelled | 16.7 | 15 | PDB header:oxygen transport Chain: A: PDB Molecule:globin; PDBTitle: globin domain of geobacter sulfurreducens globin-coupled2 sensor
22 | d1jy5a_ |
| not modelled | 16.2 | 14 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
23 | c1n6dE_ |
| not modelled | 15.5 | 38 | PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative
24 | c1k32E_ |
| not modelled | 15.5 | 38 | PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease
25 | c1tueG_ |
| not modelled | 15.4 | 15 | PDB header:replication Chain: G: PDB Molecule:regulatory protein e2; PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2
26 | d1tueb_ |
| not modelled | 15.3 | 15 | Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain
27 | d2nnua1 |
| not modelled | 15.0 | 15 | Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain
28 | d1iyba_ |
| not modelled | 14.4 | 14 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
29 | c1vd3A_ |
| not modelled | 12.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:rnase ngr3; PDBTitle: ribonuclease nt in complex with 2'-ump
30 | d1faoa_ |
| not modelled | 11.8 | 15 | Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain)
31 | c1faoA_ |
| not modelled | 11.8 | 15 | PDB header:signaling protein Chain: A: PDB Molecule:dual adaptor of phosphotyrosine and 3- PDBTitle: structure of the pleckstrin homology domain from2 dapp1/phish in complex with inositol 1,3,4,5-3 tetrakisphosphate
32 | c1m6yA_ |
| not modelled | 11.4 | 17 | PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah
33 | d2p5ka1 |
| not modelled | 11.4 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
34 | c3uo9B_ |
| not modelled | 10.9 | 15 | PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes
35 | d1wsca1 |
| not modelled | 10.6 | 18 | Fold:AMMECR1-like Superfamily:AMMECR1-like Family:AMMECR1-like
36 | c3ayhA_ |
| not modelled | 10.5 | 13 | PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii
37 | d1aoya_ |
| not modelled | 10.3 | 23 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
38 | c3b73A_ |
| not modelled | 10.3 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui
39 | c1b4aA_ |
| not modelled | 10.2 | 29 | PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
40 | d1xdza_ |
| not modelled | 10.1 | 24 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Glucose-inhibited division protein B (GidB)
41 | d1f9na1 |
| not modelled | 10.1 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
42 | c2p0vA_ |
| not modelled | 10.0 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58
43 | d2p0va1 |
| not modelled | 10.0 | 24 | Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like
44 | d1v9va1 |
| not modelled | 9.7 | 19 | Fold:Bromodomain-like Superfamily:MAST3 pre-PK domain-like Family:MAST3 pre-PK domain-like
45 | d2nvpa1 |
| not modelled | 9.3 | 33 | Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like
46 | d1b4aa1 |
| not modelled | 9.2 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
47 | c3ereD_ |
| not modelled | 9.1 | 36 | PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
48 | d2nn5a1 |
| not modelled | 8.6 | 24 | Fold:TBP-like Superfamily:Bet v1-like Family:AHSA1 domain
49 | c2kxwB_ |
| not modelled | 8.3 | 50 | PDB header:calcium-binding protein/metal transport Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha; PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2
50 | d1eo0a_ |
| not modelled | 7.8 | 21 | Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
51 | c2dymE_ |
| not modelled | 7.8 | 8 | PDB header:protein turnover/protein turnover Chain: E: PDB Molecule:autophagy protein 5; PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
52 | c3ivuB_ |
| not modelled | 7.6 | 18 | PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og
53 | c3r9jD_ |
| not modelled | 7.6 | 19 | PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
54 | d2c35a1 |
| not modelled | 7.4 | 17 | Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF)
55 | c3ss4C_ |
| not modelled | 7.4 | 15 | PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form
56 | c3htuE_ |
| not modelled | 7.2 | 20 | PDB header:protein transport Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: crystal structure of the human vps25-vps20 subcomplex
57 | d2etha1 |
| not modelled | 6.7 | 7 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
58 | c2q9rA_ |
| not modelled | 6.6 | 29 | PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution
59 | c3izct_ |
| not modelled | 6.5 | 25 | PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
60 | c3lvuB_ |
| not modelled | 6.5 | 13 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
61 | d1wjta_ |
| not modelled | 6.4 | 23 | Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
62 | d2c0sa1 |
| not modelled | 6.4 | 38 | Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like
63 | c3v4gA_ |
| not modelled | 6.3 | 23 | PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6
64 | c2kwuA_ |
| not modelled | 6.3 | 38 | PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
65 | d1zq7a1 |
| not modelled | 6.3 | 19 | Fold:AMMECR1-like Superfamily:AMMECR1-like Family:AMMECR1-like
66 | d2ea9a1 |
| not modelled | 6.3 | 42 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
67 | d1wfya_ |
| not modelled | 6.0 | 39 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
68 | d2h28a1 |
| not modelled | 6.0 | 39 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
69 | c2wqmA_ |
| not modelled | 5.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase nek7; PDBTitle: structure of apo human nek7
70 | d2dy1a4 |
| not modelled | 5.8 | 31 | Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V
71 | c1wlzD_ |
| not modelled | 5.6 | 20 | PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
72 | d1wlza1 |
| not modelled | 5.6 | 20 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
73 | d1gh6a_ |
| not modelled | 5.6 | 15 | Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain
74 | d2fcea1 |
| not modelled | 5.6 | 25 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
75 | d1iira_ |
| not modelled | 5.6 | 26 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase
76 | d1mw7a_ |
| not modelled | 5.6 | 23 | Fold:YebC-like Superfamily:YebC-like Family:YebC-like
77 | d1ucda_ |
| not modelled | 5.5 | 11 | Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like
78 | d2inwa1 |
| not modelled | 5.5 | 44 | Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like
79 | c2ckzC_ |
| not modelled | 5.3 | 21 | PDB header:transferase Chain: C: PDB Molecule:dna-directed rna polymerase iii 18 kd PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25.
80 | c2k42A_ |
| not modelled | 5.3 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
81 | d2nxpa1 |
| not modelled | 5.2 | 10 | Fold:Taf5 N-terminal domain-like Superfamily:Taf5 N-terminal domain-like Family:Taf5 N-terminal domain-like
82 | c2p6pB_ |
| not modelled | 5.2 | 15 | PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
83 | c1wg8B_ |
| not modelled | 5.1 | 18 | PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0