Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37637
DateThu Jan 5 11:56:09 GMT 2012
Unique Job ID7d297a8f5c2e3f9c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1oy8A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
Confidence and coverage
Confidence:100.0% Coverage: 97%
1006 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS
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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE
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????






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????
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   .........130.........140.........150.........160.........170.........180
Sequence  AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS
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Disorder 
?

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?
??
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???
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?

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   .........190.........200.........210.........220.........230.........240
Sequence  EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRL
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????????
???????????






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??
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   .........250.........260.........270.........280.........290.........300
Sequence  QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAL
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?




















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???
?

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   .........310.........320.........330.........340.........350.........360
Sequence  DTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQ
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   .........370.........380.........390.........400.........410.........420
Sequence  NFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVI
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   .........430.........440.........450.........460.........470.........480
Sequence  AEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLL
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   .........490.........500.........510.........520.........530.........540
Sequence  SVFVAMSLTPALCATILKAAPEGGHKPNALFARFNTLFEKSTQHYTDSTRSLLRCTGRYM
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   .........550.........560.........570.........580.........590.........600
Sequence  VVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKE
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   .........610.........620.........630.........640.........650.........660
Sequence  KDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSINKAV
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   .........670.........680.........690.........700.........710.........720
Sequence  VFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGLE
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Disorder  ??????????????????


























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???????
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   .........730.........740.........750.........760.........770.........780
Sequence  DTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRML
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?




























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???
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   .........790.........800.........810.........820.........830.........840
Sequence  PDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMK
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   .........850.........860.........870.........880.........890.........900
Sequence  FMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVM
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   .........910.........920.........930.........940.........950.........960
Sequence  LVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIE
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  AIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFV
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   .........1030.......
Sequence  PVFFVVVEHLFARFKKA
Secondary structure 


SS confidence 
















Disorder 











?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1oy8 chain A

3D model

Region: 7 - 1034
Aligned: 1006
Modelled: 1028
Confidence: 100.0%
Identity: 72%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2

PDB 3k07 chain A

3D model

Region: 1 - 1028
Aligned: 997
Modelled: 1009
Confidence: 100.0%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa

Phyre2

PDB 3aqp chain B

3D model

Region: 85 - 1030
Aligned: 676
Modelled: 704
Confidence: 100.0%
Identity: 17%
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus

Phyre2

PDB 1iwg chain A domain 8

3D model

Region: 834 - 1034
Aligned: 201
Modelled: 201
Confidence: 100.0%
Identity: 72%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 7

3D model

Region: 304 - 498
Aligned: 195
Modelled: 195
Confidence: 100.0%
Identity: 73%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 1

3D model

Region: 38 - 134
Aligned: 97
Modelled: 97
Confidence: 99.9%
Identity: 76%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 2

3D model

Region: 232 - 330
Aligned: 98
Modelled: 99
Confidence: 99.7%
Identity: 39%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 5

3D model

Region: 182 - 273
Aligned: 92
Modelled: 92
Confidence: 99.6%
Identity: 68%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 6

3D model

Region: 723 - 810
Aligned: 88
Modelled: 88
Confidence: 99.2%
Identity: 56%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 3

3D model

Region: 565 - 671
Aligned: 107
Modelled: 107
Confidence: 98.8%
Identity: 65%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 4

3D model

Region: 672 - 857
Aligned: 97
Modelled: 98
Confidence: 98.2%
Identity: 75%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 2ew9 chain A

3D model

Region: 62 - 209
Aligned: 122
Modelled: 148
Confidence: 96.4%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6

Phyre2

PDB 2rop chain A

3D model

Region: 62 - 209
Aligned: 119
Modelled: 148
Confidence: 95.9%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b

Phyre2

PDB 2rml chain A

3D model

Region: 62 - 209
Aligned: 114
Modelled: 127
Confidence: 94.7%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa

Phyre2

PDB 1s6u chain A

3D model

Region: 159 - 209
Aligned: 46
Modelled: 51
Confidence: 91.8%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2aw0 chain A

3D model

Region: 159 - 209
Aligned: 46
Modelled: 51
Confidence: 91.6%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1cpz chain A

3D model

Region: 159 - 209
Aligned: 46
Modelled: 51
Confidence: 91.2%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2qif chain A domain 1

3D model

Region: 159 - 209
Aligned: 46
Modelled: 51
Confidence: 91.1%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1q8l chain A

3D model

Region: 160 - 209
Aligned: 45
Modelled: 45
Confidence: 91.0%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 3dxs chain X

3D model

Region: 159 - 209
Aligned: 46
Modelled: 51
Confidence: 90.6%
Identity: 17%
PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase

Phyre2
1

c1oy8A_
2

c3k07A_
3

c3aqpB_
4

d1iwga8
5

d1iwga7
6

d1iwga1
7

d1iwga2
8

d1iwga5
9

d1iwga6
10

d1iwga3
11

d1iwga4
12

c2ew9A_
13

c2ropA_
14

c2rmlA_
15

d1s6ua_
16

d2aw0a_
17

d1cpza_
18

d2qifa1
19

d1q8la_
20

c3dxsX_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1oy8A_



100.0 72 PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
2c3k07A_



100.0 21 PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
3c3aqpB_



100.0 17 PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
4d1iwga8



100.0 72 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
5d1iwga7



100.0 73 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
6d1iwga1



99.9 76 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
7d1iwga2



99.7 39 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
8d1iwga5



99.6 68 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
9d1iwga6



99.2 56 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
10d1iwga3



98.8 65 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
11d1iwga4



98.2 75 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
12c2ew9A_



96.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6
13c2ropA_



95.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
14c2rmlA_



94.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
15d1s6ua_



91.8 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
16d2aw0a_



91.6 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
17d1cpza_



91.2 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
18d2qifa1



91.1 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
19d1q8la_



91.0 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
20c3dxsX_



90.6 17 PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
21c2l3mA_



not modelled 90.5 17 PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
22d1p6ta1



not modelled 90.1 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
23d1p6ta2



not modelled 90.0 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
24d1kvja_



not modelled 89.8 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
25c1yjrA_



not modelled 89.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
26c2kkhA_



not modelled 89.3 13 PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
27c2ga7A_



not modelled 89.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
28c1yg0A_



not modelled 89.2 9 PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori
29c2ldiA_



not modelled 88.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant
30d1osda_



not modelled 88.5 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
31c2ofhX_



not modelled 88.0 17 PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
32c2kt2A_



not modelled 87.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
33d1afia_



not modelled 87.0 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
34c1y3kA_



not modelled 84.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
35d1qupa2



not modelled 83.1 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
36c1jk9D_



not modelled 81.9 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
37c2k2pA_



not modelled 81.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
38d2ggpb1



not modelled 79.8 16 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
39d1mwza_



not modelled 79.6 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
40c2gcfA_



not modelled 78.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:cation-transporting atpase pacs;
PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
41d1sb6a_



not modelled 77.4 14 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
42c3j09A_



not modelled 77.2 20 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
43c2rogA_



not modelled 75.6 12 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
44c1qupA_



not modelled 75.2 19 PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase
45c2crlA_



not modelled 74.7 16 PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
46c2yvxD_



not modelled 67.1 13 PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
47d1cc8a_



not modelled 66.7 12 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
48c2aj1A_



not modelled 66.5 9 PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
49c1yj7A_



not modelled 62.1 16 PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
50c2kyzA_



not modelled 51.7 15 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
51c1ciiA_



not modelled 40.3 17 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
52d2vv5a2



not modelled 37.9 15 Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
53d2cu6a1



not modelled 37.8 20 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
54d1uwda_



not modelled 36.6 13 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
55c3c6fD_



not modelled 29.1 8 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:yetf protein;
PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis
56c3gdzA_



not modelled 28.1 14 PDB header:ligase
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae
57c3fryB_



not modelled 25.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
58d1jb0i_



not modelled 24.6 19 Fold:Single transmembrane helix
Superfamily:Subunit VIII of photosystem I reaction centre, PsaI
Family:Subunit VIII of photosystem I reaction centre, PsaI
59c3lnoA_



not modelled 24.2 18 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis
60d1f7ua3



not modelled 21.2 13 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
61d1fe0a_



not modelled 20.6 14 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
62c2bbjB_



not modelled 19.6 9 PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
63c2yy3B_



not modelled 17.9 9 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
64d1ek8a_



not modelled 16.5 27 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
65c3iplB_



not modelled 16.1 12 PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50
66d1wqga1



not modelled 15.8 19 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
67d1a87a_



not modelled 15.7 15 Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
68c1a87A_



not modelled 15.7 15 PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
69d1ydxa2



not modelled 14.6 19 Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
70c3g7sA_



not modelled 13.8 18 PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
71d1dd5a_



not modelled 13.6 15 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
72d1eh1a_



not modelled 13.5 23 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
73d2phcb2



not modelled 13.5 16 Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
74c2ki0A_



not modelled 13.2 13 PDB header:de novo protein
Chain: A: PDB Molecule:ds119;
PDBTitle: nmr structure of a de novo designed beta alpha beta
75d1is1a_



not modelled 13.2 27 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
76d2nwwa1



not modelled 13.0 10 Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
77d2ffma1



not modelled 12.9 9 Fold:Hypothetical protein SAV1430
Superfamily:Hypothetical protein SAV1430
Family:Hypothetical protein SAV1430
78c1f7uA_



not modelled 12.6 13 PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
79d1kfta_



not modelled 12.4 18 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
80c1kftA_



not modelled 12.4 18 PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
81d2b3ya2



not modelled 12.2 43 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
82c3g74B_



not modelled 12.1 42 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a functionally unknown protein from eubacterium2 ventriosum atcc 27560
83d1x2ia1



not modelled 11.7 15 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
84c2y9jt_



not modelled 11.6 14 PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
85c2k1hA_



not modelled 11.5 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ser13;
PDBTitle: solution nmr structure of ser13 from staphylococcus epidermidis.2 northeast structural genomics consortium target ser13
86c2vxaL_



not modelled 11.3 21 PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
87d1nwaa_



not modelled 11.2 23 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
88c1nwaA_



not modelled 11.2 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
89d2cfxa2



not modelled 11.2 7 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
90c2hdiA_



not modelled 11.1 32 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
91d1ge9a_



not modelled 10.9 15 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
92d1yvwa1



not modelled 10.9 27 Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
93c1yvwD_



not modelled 10.9 27 PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
94d2ux9a1



not modelled 10.8 14 Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
95d2cyya2



not modelled 10.7 4 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
96c3oqtP_



not modelled 10.7 10 PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
97d2cg4a2



not modelled 10.3 9 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
98c2k9pA_



not modelled 10.3 16 PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
99d2axti1



not modelled 10.3 12 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0