Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	D	Y	I	L	S	L	G	G	T	V	F	V	P	I	I	M	I	V	I	G	L	I	F	R	I	P	W	L	Q	A	I	K	A	G	V	T	V	G	I	G	F	V	G	M	G	L	V	I	V	M	A	I	D	S	L	S	P	P
Secondary structure
SS confidence
Disorder		?	?																																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	K	V	M	I	E	R	F	G	L	A	L	H	V	F	D	V	G	A	G	P	A	S	G	V	G	Y	A	T	A	I	G	A	M	I	I	P	V	I	F	L	L	N	V	A	M	L	V	T	R	L	T	K	T	M	N	V	D	I	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	Y	W	H	Y	A	I	T	G	T	V	V	Q	L	M	T	G	S	L	I	Y	G	V	L	G	A	I	C	H	A	A	L	S	L	K	M	A	D	W	T	A	K	R	V	Q	N	I	V	G	L	E	G	I	S	I	P	Q	G	Y	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	S	S	V	P	L	F	V	L	L	D	A	I	Y	E	K	I	P	F	M	K	G	R	N	I	D	A	Q	E	I	Q	K	R	Y	G	M	V	G	D	P	V	I	I	G	V	V	L	G	L	I	F	G	L	A	A	G	E	G	F	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	C	A	S	L	M	I	T	V	A	A	I	M	V	L	F	P	R	M	I	R	L	I	V	E	G	L	L	P	I	S	D	G	A	R	K	F	F	Q	K	Y	F	K	G	R	E	V	Y	I	G	L	D	T	A	V	T	L	G	H	P
Secondary structure
SS confidence
Disorder																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	T	I	A	V	G	L	L	L	I	P	I	M	L	I	L	A	S	I	L	P	G	N	K	V	L	P	L	A	D	L	P	V	A	P	F	F	I	C	M	A	T	V	I	H	R	G	D	L	V	R	T	L	I	S	G	V	I	V	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	T	V	L	L	I	A	T	Q	F	A	P	Y	F	T	E	M	A	L	K	G	G	F	S	F	A	G	E	S	A	Q	I	S	A	L	S	V	G	N	M	F	G	W	S	I	S	E	L	M	S	L	G	I	I	G	V	V	V	A	V
Secondary structure
SS confidence
Disorder																												?	?								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Sequence		G	I	V	A	S	V	V	L	F	L	R	K	R	E	L	S	E
Secondary structure
SS confidence
Disorder												?	?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2nsc chain A Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 41.6% Identity: 20% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima Phyre2 PDB 3k3g chain A Region: 82 - 216 Aligned: 131 Modelled: 135 Confidence: 40.5% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Phyre2 PDB 1w26 chain A domain 2 Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 36.2% Identity: 20% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1p9y chain A Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 35.0% Identity: 20% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 1t11 chain A domain 2 Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 34.6% Identity: 15% Fold: Ribosome binding domain-like Superfamily: Trigger factor ribosome-binding domain Family: Trigger factor ribosome-binding domain Phyre2 PDB 2d3o chain 1 Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 31.1% Identity: 20% PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans Phyre2 PDB 1t11 chain A Region: 196 - 215 Aligned: 20 Modelled: 20 Confidence: 28.2% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor Phyre2 PDB 1cpz chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 27.7% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1osd chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 27.6% Identity: 6% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2qgo chain A Region: 270 - 293 Aligned: 24 Modelled: 24 Confidence: 25.8% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus Phyre2 PDB 1yg0 chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 25.5% Identity: 6% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1p6t chain A domain 2 Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 24.5% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1y3k chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 24.5% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 1mwz chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 24.4% Identity: 3% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2yvx chain D Region: 221 - 320 Aligned: 83 Modelled: 100 Confidence: 24.1% Identity: 18% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 PDB 2k2p chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 21.6% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 Phyre2 PDB 2ga7 chain A Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 21.3% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) Phyre2 PDB 2ofh chain X Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 18.7% Identity: 15% PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form Phyre2 PDB 2qif chain A domain 1 Region: 168 - 209 Aligned: 34 Modelled: 42 Confidence: 18.5% Identity: 9% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2p2e chain A domain 1 Region: 270 - 296 Aligned: 27 Modelled: 27 Confidence: 18.1% Identity: 26% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 1 c2nscA_ 2 c3k3gA_ 3 d1w26a2 4 d1p9ya_ 5 d1t11a2 6 c2d3o1_ 7 c1t11A_ 8 d1cpza_ 9 d1osda_ 10 c2qgoA_ 11 c1yg0A_ 12 d1p6ta2 13 c1y3kA_ 14 d1mwza_ 15 c2yvxD_ 16 c2k2pA_ 17 c2ga7A_ 18 c2ofhX_ 19 d2qifa1 20 d2p2ea1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2nscA_ 41.6 20 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima 2 c3k3gA_ 40.5 10 PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea 3 d1w26a2 36.2 20 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 4 d1p9ya_ 35.0 20 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 5 d1t11a2 34.6 15 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 6 c2d3o1_ 31.1 20 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 7 c1t11A_ 28.2 15 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 8 d1cpza_ 27.7 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 9 d1osda_ 27.6 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 10 c2qgoA_ 25.8 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus 11 c1yg0A_ 25.5 6 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 12 d1p6ta2 24.5 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 13 c1y3kA_ 24.5 12 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 14 d1mwza_ 24.4 3 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 15 c2yvxD_ 24.1 18 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 16 c2k2pA_ 21.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 17 c2ga7A_ 21.3 12 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 18 c2ofhX_ 18.7 15 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 19 d2qifa1 18.5 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 20 d2p2ea1 18.1 26 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 21 c2aj1A_ not modelled 18.0 9 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 22 d2aw0a_ not modelled 17.2 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 23 d1afia_ not modelled 16.4 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 24 d1p6ta1 not modelled 15.9 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 25 d1qb2a_ not modelled 15.8 17 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 26 c3dxsX_ not modelled 15.8 12 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 27 c2kt2A_ not modelled 15.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 28 d1vyva2 not modelled 14.2 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 29 d1w4ha1 not modelled 14.2 29 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 30 c3bdlA_ not modelled 14.2 33 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 31 d1kvja_ not modelled 13.9 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 32 d1qzxa2 not modelled 13.8 21 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 33 c2kkhA_ not modelled 13.8 21 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 34 d1jw2a_ not modelled 13.8 36 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 35 c2e75E_ not modelled 13.7 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 36 c2e74E_ not modelled 13.7 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 37 c2e76E_ not modelled 13.7 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 38 d2e74e1 not modelled 13.7 29 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 39 c1vf5R_ not modelled 13.7 29 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 40 d2aq0a1 not modelled 13.6 10 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 41 d1uwda_ not modelled 13.0 11 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 42 d1s6ua_ not modelled 12.3 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 43 d2cyua1 not modelled 12.1 29 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 44 c2rogA_ not modelled 10.5 12 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 45 d2ffha2 not modelled 10.2 17 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 46 c1yjrA_ not modelled 10.1 15 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 47 c1w26B_ not modelled 10.0 20 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 48 c2iy3A_ not modelled 9.9 21 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 49 d1sb6a_ not modelled 9.5 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 50 c2l3mA_ not modelled 9.4 12 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 51 d1vs6z1 not modelled 9.2 25 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 52 d3elga1 not modelled 8.8 31 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 53 d1x2ia1 not modelled 8.7 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 54 d1ftra1 not modelled 8.6 16 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 55 c2vzkD_ not modelled 8.0 32 PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2 56 c1qzwC_ not modelled 7.5 21 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 57 d1q8la_ not modelled 7.5 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 58 d2ggpb1 not modelled 7.4 6 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 59 d2a1jb1 not modelled 7.3 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 c3j09A_ not modelled 7.1 6 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 61 c2ksdA_ not modelled 6.8 14 PDB header:transferase Chain: A: PDB Molecule:aerobic respiration control sensor protein arcb; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor arcb, center for structures of3 membrane proteins (csmp) target 4310c 62 c2dbcA_ not modelled 6.7 16 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2) 63 c1vf5E_ not modelled 6.7 27 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 64 c1xbsA_ not modelled 6.6 8 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 65 c2kncA_ not modelled 6.5 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 66 c3dv0I_ not modelled 6.4 11 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 67 c2ldiA_ not modelled 6.4 6 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 68 c3bvsA_ not modelled 6.4 12 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 69 d3duea1 not modelled 6.3 25 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 70 c2kelB_ not modelled 6.1 21 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 71 c2q9rA_ not modelled 6.1 7 PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution 72 d1nyta2 not modelled 6.0 33 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 73 d1w85i_ not modelled 5.8 13 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 74 c3b1qD_ not modelled 5.6 22 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 75 c2eq9C_ not modelled 5.6 11 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 76 c2wwaJ_ not modelled 5.6 14 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 77 d2c4ka1 not modelled 5.6 27 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 78 d1vyua2 not modelled 5.5 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 79 d1xs5a_ not modelled 5.5 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 80 c2eq7C_ not modelled 5.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 81 c2gcfA_ not modelled 5.5 15 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 82 c3tqwA_ not modelled 5.4 17 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 83 c1w3dA_ not modelled 5.4 11 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 84 d1bala_ not modelled 5.4 26 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 85 d1vkpa_ not modelled 5.3 15 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 86 d2axoa1 not modelled 5.2 44 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 87 c3pwzA_ not modelled 5.2 44 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida 88 d2brja1 not modelled 5.2 25 Fold:AOC barrel-like Superfamily:Allene oxide cyclase-like Family:Allene oxide cyclase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0