Phyre 2 Results for P39365

Email | l.a.kelley@imperial.ac.uk
Description | P39365
Date | Thu Jan 5 11:59:56 GMT 2012
Unique Job ID | 7b2c078e2a315500

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2nscA_ |
|  | 41.6 | 20 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima
2 | c3k3gA_ |
|  | 40.5 | 10 | PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
3 | d1w26a2 |
|  | 36.2 | 20 | Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain
4 | d1p9ya_ |
|  | 35.0 | 20 | Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain
5 | d1t11a2 |
|  | 34.6 | 15 | Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain
6 | c2d3o1_ |
|  | 31.1 | 20 | PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans
7 | c1t11A_ |
|  | 28.2 | 15 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor
8 | d1cpza_ |
|  | 27.7 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
9 | d1osda_ |
|  | 27.6 | 6 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
10 | c2qgoA_ |
|  | 25.8 | 13 | PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus
11 | c1yg0A_ |
|  | 25.5 | 6 | PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori
12 | d1p6ta2 |
|  | 24.5 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
13 | c1y3kA_ |
|  | 24.5 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
14 | d1mwza_ |
|  | 24.4 | 3 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
15 | c2yvxD_ |
|  | 24.1 | 18 | PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte
16 | c2k2pA_ |
|  | 21.6 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
17 | c2ga7A_ |
|  | 21.3 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
18 | c2ofhX_ |
|  | 18.7 | 15 | PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
19 | d2qifa1 |
|  | 18.5 | 9 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
20 | d2p2ea1 |
|  | 18.1 | 26 | Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain
21 | c2aj1A_ |
| not modelled | 18.0 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada
22 | d2aw0a_ |
| not modelled | 17.2 | 21 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
23 | d1afia_ |
| not modelled | 16.4 | 6 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
24 | d1p6ta1 |
| not modelled | 15.9 | 9 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
25 | d1qb2a_ |
| not modelled | 15.8 | 17 | Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain
26 | c3dxsX_ |
| not modelled | 15.8 | 12 | PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
27 | c2kt2A_ |
| not modelled | 15.1 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
28 | d1vyva2 |
| not modelled | 14.2 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
29 | d1w4ha1 |
| not modelled | 14.2 | 29 | Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
30 | c3bdlA_ |
| not modelled | 14.2 | 33 | PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn
31 | d1kvja_ |
| not modelled | 13.9 | 21 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
32 | d1qzxa2 |
| not modelled | 13.8 | 21 | Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain
33 | c2kkhA_ |
| not modelled | 13.8 | 21 | PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4
34 | d1jw2a_ |
| not modelled | 13.8 | 36 | Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA
35 | c2e75E_ |
| not modelled | 13.7 | 29 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
36 | c2e74E_ |
| not modelled | 13.7 | 29 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
37 | c2e76E_ |
| not modelled | 13.7 | 29 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
38 | d2e74e1 |
| not modelled | 13.7 | 29 | Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex
39 | c1vf5R_ |
| not modelled | 13.7 | 29 | PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
40 | d2aq0a1 |
| not modelled | 13.6 | 10 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
41 | d1uwda_ |
| not modelled | 13.0 | 11 | Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like
42 | d1s6ua_ |
| not modelled | 12.3 | 18 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
43 | d2cyua1 |
| not modelled | 12.1 | 29 | Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
44 | c2rogA_ |
| not modelled | 10.5 | 12 | PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
45 | d2ffha2 |
| not modelled | 10.2 | 17 | Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain
46 | c1yjrA_ |
| not modelled | 10.1 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
47 | c1w26B_ |
| not modelled | 10.0 | 20 | PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins
48 | c2iy3A_ |
| not modelled | 9.9 | 21 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
49 | d1sb6a_ |
| not modelled | 9.5 | 6 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
50 | c2l3mA_ |
| not modelled | 9.4 | 12 | PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
51 | d1vs6z1 |
| not modelled | 9.2 | 25 | Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p
52 | d3elga1 |
| not modelled | 8.8 | 31 | Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like
53 | d1x2ia1 |
| not modelled | 8.7 | 29 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
54 | d1ftra1 |
| not modelled | 8.6 | 16 | Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
55 | c2vzkD_ |
| not modelled | 8.0 | 32 | PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2
56 | c1qzwC_ |
| not modelled | 7.5 | 21 | PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
57 | d1q8la_ |
| not modelled | 7.5 | 18 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
58 | d2ggpb1 |
| not modelled | 7.4 | 6 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
59 | d2a1jb1 |
| not modelled | 7.3 | 14 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
60 | c3j09A_ |
| not modelled | 7.1 | 6 | PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
61 | c2ksdA_ |
| not modelled | 6.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:aerobic respiration control sensor protein arcb; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor arcb, center for structures of3 membrane proteins (csmp) target 4310c
62 | c2dbcA_ |
| not modelled | 6.7 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2)
63 | c1vf5E_ |
| not modelled | 6.7 | 27 | PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
64 | c1xbsA_ |
| not modelled | 6.6 | 8 | PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein
65 | c2kncA_ |
| not modelled | 6.5 | 23 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
66 | c3dv0I_ |
| not modelled | 6.4 | 11 | PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex
67 | c2ldiA_ |
| not modelled | 6.4 | 6 | PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant
68 | c3bvsA_ |
| not modelled | 6.4 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd
69 | d3duea1 |
| not modelled | 6.3 | 25 | Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like
70 | c2kelB_ |
| not modelled | 6.1 | 21 | PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
71 | c2q9rA_ |
| not modelled | 6.1 | 7 | PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a duf416 family protein (sbal_3149) from2 shewanella baltica os155 at 1.91 a resolution
72 | d1nyta2 |
| not modelled | 6.0 | 33 | Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like
73 | d1w85i_ |
| not modelled | 5.8 | 13 | Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
74 | c3b1qD_ |
| not modelled | 5.6 | 22 | PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine
75 | c2eq9C_ |
| not modelled | 5.6 | 11 | PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
76 | c2wwaJ_ |
| not modelled | 5.6 | 14 | PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome
77 | d2c4ka1 |
| not modelled | 5.6 | 27 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
78 | d1vyua2 |
| not modelled | 5.5 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
79 | d1xs5a_ |
| not modelled | 5.5 | 18 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
80 | c2eq7C_ |
| not modelled | 5.5 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
81 | c2gcfA_ |
| not modelled | 5.5 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
82 | c3tqwA_ |
| not modelled | 5.4 | 17 | PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
83 | c1w3dA_ |
| not modelled | 5.4 | 11 | PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p
84 | d1bala_ |
| not modelled | 5.4 | 26 | Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
85 | d1vkpa_ |
| not modelled | 5.3 | 15 | Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase
86 | d2axoa1 |
| not modelled | 5.2 | 44 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like
87 | c3pwzA_ |
| not modelled | 5.2 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida
88 | d2brja1 |
| not modelled | 5.2 | 25 | Fold:AOC barrel-like Superfamily:Allene oxide cyclase-like Family:Allene oxide cyclase-like