Phyre 2 alignment of P39365 with c1qzwC_

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Job Description | P39365
Confidence | 7.51% | Date | Thu Jan 5 11:59:56 GMT 2012
Rank | 56 | Aligned Residues | 24
% Identity | 21% | Template | c1qzwC_
PDB info | PDB header:signaling protein/rna | Chain: C: PDB Molecule:signal recognition 54 kda protein; | PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
Resolution | 4.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | 210 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | L | L | D | A | I | Y | E | K | I | P | F | M | K | G | R | . | . | . | . | . | . | . | . | . | N | I | D | A | Q | E | I | Q | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | L | S | K | V | L | Q | H | I | P | G | L | G | I | M | L | P | T | P | S | E | D | Q | L | K | I | G | E | E | K | I | R | R
Template Known Secondary structure |  |  | S | T |  |  |  |  |  | S |  |  | S | S |  | S | S | S |  |  | S | S | S | S | S |  |  |  | T | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 344 | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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