16/01/2012 02:30:12 : INFO  : Run start: Mon Jan 16 02:30:11 GMT 2012
16/01/2012 02:30:14 : INFO  : Initialised job
16/01/2012 02:30:15 : INFO  : Renaming log file 'phyre2_20120116_023011.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7b2c078e2a315500/phyre_20120116_023011.log'
16/01/2012 02:30:16 : INFO  : Initialised job:
Sequence
>batch____
MFDYILSLGGTVFVPIIMIVIGLIFRIPWLQAIKAGVTVGIGFVGMGLVIVMAIDSLSPP
IKVMIERFGLALHVFDVGAGPASGVGYATAIGAMIIPVIFLLNVAMLVTRLTKTMNVDIY
NYWHYAITGTVVQLMTGSLIYGVLGAICHAALSLKMADWTAKRVQNIVGLEGISIPQGYG
SSSVPLFVLLDAIYEKIPFMKGRNIDAQEIQKRYGMVGDPVIIGVVLGLIFGLAAGEGFK
GCASLMITVAAIMVLFPRMIRLIVEGLLPISDGARKFFQKYFKGREVYIGLDTAVTLGHP
TTIAVGLLLIPIMLILASILPGNKVLPLADLPVAPFFICMATVIHRGDLVRTLISGVIVM
ITVLLIATQFAPYFTEMALKGGFSFAGESAQISALSVGNMFGWSISELMSLGIIGVVVAV
GIVASVVLFLRKRELSE

16/01/2012 02:30:16 : INFO  : Checked sequence
16/01/2012 02:30:18 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 02:30:18 : INFO  : PSI-BLAST 3 iterations
16/01/2012 02:32:57 : INFO  : PSI-BLAST 5 iterations
16/01/2012 02:35:25 : INFO  : Finished PSI-BLAST
16/01/2012 02:35:27 : INFO  : Running Buildali to generate a3m file
16/01/2012 02:44:43 : INFO  : Converting to HMM
16/01/2012 02:44:44 : INFO  : Calibrating HMM
16/01/2012 02:45:01 : INFO  : Searching HMM database
16/01/2012 02:55:22 : INFO  : Finished buildali
16/01/2012 02:55:23 : INFO  : Predicting secondary structure
16/01/2012 02:55:29 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 02:55:30 : INFO  : Predicting Disordered regions
16/01/2012 02:55:33 : INFO  : Predicted Disorder (Disopred)
16/01/2012 02:55:34 : INFO  : Running memsat_svm check
16/01/2012 02:57:39 : INFO  : Running memsat_svm full
16/01/2012 03:03:14 : INFO  : Predicted Transmembrane (memsat_svm) ID '7b2c078e2a315500'
16/01/2012 03:03:16 : INFO  : Initialising fold library search
16/01/2012 03:03:20 : INFO  : Initialised search input
16/01/2012 03:03:22 : INFO  : Building Ensemble models
16/01/2012 03:03:25 : INFO  : Building hh.c2nscA_.model.1.pdb
16/01/2012 03:03:36 : INFO  : Building c2nscA_.1.pdb
16/01/2012 03:03:46 : INFO  : Building c3k3gA_.2.pdb
16/01/2012 03:03:57 : INFO  : Building d1w26a2.3.pdb
16/01/2012 03:04:07 : INFO  : Building d1p9ya_.4.pdb
16/01/2012 03:04:18 : INFO  : Building d1t11a2.5.pdb
16/01/2012 03:04:28 : INFO  : Building c2d3o1_.6.pdb
16/01/2012 03:04:39 : INFO  : Building c1t11A_.7.pdb
16/01/2012 03:04:50 : INFO  : Building d1cpza_.8.pdb
16/01/2012 03:05:01 : INFO  : Building d1osda_.9.pdb
16/01/2012 03:05:12 : INFO  : Building c2qgoA_.10.pdb
16/01/2012 03:05:22 : INFO  : Building c1yg0A_.11.pdb
16/01/2012 03:05:31 : INFO  : Building d1p6ta2.12.pdb
16/01/2012 03:05:42 : INFO  : Building c1y3kA_.13.pdb
16/01/2012 03:05:51 : INFO  : Building d1mwza_.14.pdb
16/01/2012 03:06:04 : INFO  : Building c2yvxD_.15.pdb
16/01/2012 03:06:16 : INFO  : Building c2k2pA_.16.pdb
16/01/2012 03:06:26 : INFO  : Building c2ga7A_.17.pdb
16/01/2012 03:06:37 : INFO  : Building c2ofhX_.18.pdb
16/01/2012 03:06:47 : INFO  : Building d2qifa1.19.pdb
16/01/2012 03:06:57 : INFO  : Building d2p2ea1.20.pdb
16/01/2012 03:07:18 : INFO  : Finished HH model building
16/01/2012 03:07:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 03:08:24 : INFO  : html domain output complete ID '7b2c078e2a315500'
16/01/2012 03:13:49 : INFO  : Run end  : Mon Jan 16 03:13:48 GMT 2012
