Phyre 2 alignment of P39365 with d1vkpa_

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Job Description | P39365
Confidence | 5.29% | Date | Thu Jan 5 11:59:56 GMT 2012
Rank | 85 | Aligned Residues | 27
% Identity | 15% | Template | d1vkpa_
SCOP info | Pentein, beta/alpha-propeller | Pentein | Porphyromonas-type peptidylarginine deiminase
Resolution | 1.53

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 272 | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . |  | . |  | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |
Query Sequence |  | D | G | A | R | K | F | F | Q | K | Y | F | K | G | R | E | V | Y | I | G | L | D | . | T | . | A | V | T | L | G | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  | . |  | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | E | A | I | R | V | L | S | D | T | F | P | H | H | S | . | V | V | G | I | E | N | A | R | E | I | V | L | A | G
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  | . |  |  |  |  | T | T | T |  |  |  |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 333 | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . |  | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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