Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	V	V	E	L	I	I	V	L	L	A	I	F	L	G	A	R	L	G	G	I	G	I	G	F	A	G	G	L	G	V	L	V	L	A	A	I	G	V	K	P	G	N	I	P	F	D	V	I	S	I	I	M	A	V	I	A	A	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	M	Q	V	A	G	G	L	D	Y	L	V	H	Q	T	E	K	L	L	R	R	N	P	K	Y	I	T	I	L	A	P	I	V	T	Y	F	L	T	I	F	A	G	T	G	N	I	S	L	A	T	L	P	V	I	A	E	V	A	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	Q	G	V	K	P	C	R	P	L	S	T	A	V	V	S	A	Q	I	A	I	T	A	S	P	I	S	A	A	V	V	Y	M	S	S	V	M	E	G	H	G	I	S	Y	L	H	L	L	S	V	V	I	P	S	T	L	L	A	V	L
Secondary structure
SS confidence
Disorder			?	?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	M	S	F	L	V	T	M	L	F	N	S	K	L	S	D	D	P	I	Y	R	K	R	L	E	E	G	L	V	E	L	R	G	E	K	Q	I	E	I	K	S	G	A	K	T	S	V	W	L	F	L	L	G	V	V	G	V	V	I	Y
Secondary structure
SS confidence
Disorder															?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	I	I	N	S	P	S	M	G	L	V	E	K	P	L	M	N	T	T	N	A	I	L	I	I	M	L	S	V	A	T	L	T	T	V	I	C	K	V	D	T	D	N	I	L	N	S	S	T	F	K	A	G	M	S	A	C	I	C	I
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	G	V	A	W	L	G	D	T	F	V	S	N	N	I	D	W	I	K	D	T	A	G	E	V	I	Q	G	H	P	W	L	L	A	V	I	F	F	F	A	S	A	L	L	Y	S	Q	A	A	T	A	K	A	L	M	P	M	A	L	A
Secondary structure
SS confidence
Disorder																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	N	V	S	P	L	T	A	V	A	S	F	A	A	V	S	G	L	F	I	L	P	T	Y	P	T	L	V	A	A	V	Q	M	D	D	T	G	T	T	R	I	G	K	F	V	F	N	H	P	F	F	I	P	G	T	L	G	V	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.
Sequence		A	V	C	F	G	F	V	L	G	S	F	M	L
Secondary structure
SS confidence
Disorder											?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zbs chain A domain 1 Region: 104 - 154 Aligned: 39 Modelled: 51 Confidence: 54.2% Identity: 26% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 2zv6 chain A Region: 389 - 411 Aligned: 20 Modelled: 23 Confidence: 51.4% Identity: 40% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin b3; PDBTitle: crystal structure of human squamous cell carcinoma antigen 1 Phyre2 PDB 1by7 chain A Region: 389 - 411 Aligned: 21 Modelled: 23 Confidence: 51.1% Identity: 43% Fold: Serpins Superfamily: Serpins Family: Serpins Phyre2 PDB 1sng chain A Region: 389 - 411 Aligned: 22 Modelled: 18 Confidence: 48.5% Identity: 32% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cog4826: serine protease inhibitor; PDBTitle: structure of a thermophilic serpin in the native state Phyre2 PDB 1q40 chain C Region: 376 - 402 Aligned: 27 Modelled: 27 Confidence: 39.7% Identity: 37% PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex Phyre2 PDB 1q42 chain A Region: 376 - 402 Aligned: 27 Modelled: 27 Confidence: 37.9% Identity: 37% Fold: Cystatin-like Superfamily: NTF2-like Family: NTF2-like Phyre2 PDB 2uv1 chain B Region: 195 - 206 Aligned: 12 Modelled: 12 Confidence: 29.7% Identity: 33% PDB header:inhibitor Chain: B: PDB Molecule:host-nuclease inhibitor protein gam; PDBTitle: hexagonal crystal form of gams from bacteriophage lambda. Phyre2 PDB 3o8j chain H Region: 39 - 159 Aligned: 120 Modelled: 121 Confidence: 29.1% Identity: 13% PDB header:transferase Chain: H: PDB Molecule:2-methylcitrate synthase; PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium Phyre2 PDB 2oay chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 28.7% Identity: 22% PDB header:immune system,hydrolase inhibitor Chain: A: PDB Molecule:plasma protease c1 inhibitor; PDBTitle: crystal structure of latent human c1-inhibitor Phyre2 PDB 1u5t chain A domain 1 Region: 185 - 206 Aligned: 21 Modelled: 22 Confidence: 28.5% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 3le2 chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 27.9% Identity: 43% PDB header:hydrolase Chain: A: PDB Molecule:serpin-zx; PDBTitle: structure of arabidopsis atserpin1. native stressed conformation Phyre2 PDB 3ozq chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 27.5% Identity: 30% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin48; PDBTitle: crystal structure of serpin48, which is a highly specific serpin in2 the insect tenebrio molitor Phyre2 PDB 3pzf chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 26.2% Identity: 39% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin 2; PDBTitle: 1.75a resolution structure of serpin-2 from anopheles gambiae Phyre2 PDB 2vh4 chain B Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 25.8% Identity: 35% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:tengpin; PDBTitle: structure of a loop c-sheet serpin polymer Phyre2 PDB 1imv chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 25.7% Identity: 22% Fold: Serpins Superfamily: Serpins Family: Serpins Phyre2 PDB 2r9y chain A Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 25.6% Identity: 22% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-2-antiplasmin; PDBTitle: structure of antiplasmin Phyre2 PDB 2nww chain A domain 1 Region: 110 - 179 Aligned: 70 Modelled: 70 Confidence: 25.2% Identity: 24% Fold: Proton glutamate symport protein Superfamily: Proton glutamate symport protein Family: Proton glutamate symport protein Phyre2 PDB 1k82 chain A domain 1 Region: 74 - 129 Aligned: 43 Modelled: 56 Confidence: 24.6% Identity: 26% Fold: S13-like H2TH domain Superfamily: S13-like H2TH domain Family: Middle domain of MutM-like DNA repair proteins Phyre2 PDB 2dut chain C Region: 389 - 411 Aligned: 23 Modelled: 23 Confidence: 24.0% Identity: 43% PDB header:hydrolase inhibitor Chain: C: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the native conformation Phyre2 PDB 1af7 chain A domain 2 Region: 70 - 125 Aligned: 47 Modelled: 56 Confidence: 23.9% Identity: 17% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: Chemotaxis receptor methyltransferase CheR, C-terminal domain Phyre2 1 d1zbsa1 2 c2zv6A_ 3 d1by7a_ 4 c1sngA_ 5 c1q40C_ 6 d1q42a_ 7 c2uv1B_ 8 c3o8jH_ 9 c2oayA_ 10 d1u5ta1 11 c3le2A_ 12 c3ozqA_ 13 c3pzfA_ 14 c2vh4B_ 15 d1imva_ 16 c2r9yA_ 17 d2nwwa1 18 d1k82a1 19 c2dutC_ 20 d1af7a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1zbsa1 54.2 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 2 c2zv6A_ 51.4 40 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin b3; PDBTitle: crystal structure of human squamous cell carcinoma antigen 1 3 d1by7a_ 51.1 43 Fold:Serpins Superfamily:Serpins Family:Serpins 4 c1sngA_ 48.5 32 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cog4826: serine protease inhibitor; PDBTitle: structure of a thermophilic serpin in the native state 5 c1q40C_ 39.7 37 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 6 d1q42a_ 37.9 37 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 7 c2uv1B_ 29.7 33 PDB header:inhibitor Chain: B: PDB Molecule:host-nuclease inhibitor protein gam; PDBTitle: hexagonal crystal form of gams from bacteriophage lambda. 8 c3o8jH_ 29.1 13 PDB header:transferase Chain: H: PDB Molecule:2-methylcitrate synthase; PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium 9 c2oayA_ 28.7 22 PDB header:immune system,hydrolase inhibitor Chain: A: PDB Molecule:plasma protease c1 inhibitor; PDBTitle: crystal structure of latent human c1-inhibitor 10 d1u5ta1 28.5 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 11 c3le2A_ 27.9 43 PDB header:hydrolase Chain: A: PDB Molecule:serpin-zx; PDBTitle: structure of arabidopsis atserpin1. native stressed conformation 12 c3ozqA_ 27.5 30 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin48; PDBTitle: crystal structure of serpin48, which is a highly specific serpin in2 the insect tenebrio molitor 13 c3pzfA_ 26.2 39 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin 2; PDBTitle: 1.75a resolution structure of serpin-2 from anopheles gambiae 14 c2vh4B_ 25.8 35 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:tengpin; PDBTitle: structure of a loop c-sheet serpin polymer 15 d1imva_ 25.7 22 Fold:Serpins Superfamily:Serpins Family:Serpins 16 c2r9yA_ 25.6 22 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-2-antiplasmin; PDBTitle: structure of antiplasmin 17 d2nwwa1 25.2 24 Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein 18 d1k82a1 24.6 26 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 19 c2dutC_ 24.0 43 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the native conformation 20 d1af7a2 23.9 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain 21 c3druC_ not modelled 23.3 35 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:alpha-1-antitrypsin; PDBTitle: crystal structure of gly117phe alpha1-antitrypsin 22 c3f5nA_ not modelled 23.0 22 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:neuroserpin; PDBTitle: structure of native human neuroserpin 23 c3crcB_ not modelled 23.0 27 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 24 d2b5ti1 not modelled 22.4 35 Fold:Serpins Superfamily:Serpins Family:Serpins 25 c3b8eB_ not modelled 21.6 20 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 26 c1jmoA_ not modelled 21.1 39 PDB header:blood clotting Chain: A: PDB Molecule:heparin cofactor ii; PDBTitle: crystal structure of the heparin cofactor ii-s195a thrombin complex 27 d1jmja_ not modelled 20.8 39 Fold:Serpins Superfamily:Serpins Family:Serpins 28 d1ee8a1 not modelled 20.7 34 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 29 c2v95A_ not modelled 20.2 30 PDB header:transport protein Chain: A: PDB Molecule:corticosteroid-binding globulin; PDBTitle: struture of corticosteroid-binding globulin in complex with2 cortisol 30 c2kluA_ not modelled 19.2 31 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 31 c3h5cA_ not modelled 18.4 26 PDB header:hydrolase inhibitor/blood clotting Chain: A: PDB Molecule:protein z-dependent protease inhibitor; PDBTitle: x-ray structure of protein z-protein z inhibitor complex 32 d1tdza1 not modelled 18.3 37 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 33 c2xpiE_ not modelled 17.7 56 PDB header:cell cycle Chain: E: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 34 d1k9oi_ not modelled 17.0 22 Fold:Serpins Superfamily:Serpins Family:Serpins 35 c2wxxC_ not modelled 16.9 9 PDB header:hormone Chain: C: PDB Molecule:angiotensinogen; PDBTitle: crystal structure of mouse angiotensinogen in the oxidised form 36 c3f1sA_ not modelled 16.0 26 PDB header:hydrolase inhibitor/hydrolase Chain: A: PDB Molecule:protein z-dependent protease inhibitor; PDBTitle: crystal structure of protein z complexed with protein z-dependent2 inhibitor 37 d1seka_ not modelled 15.9 30 Fold:Serpins Superfamily:Serpins Family:Serpins 38 d2gh1a1 not modelled 15.6 29 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:BC2162-like 39 d1klva_ not modelled 15.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:GABARAP-like 40 d2ezwa1 not modelled 15.2 43 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 41 c3djlA_ not modelled 14.1 36 PDB header:oxidoreductase Chain: A: PDB Molecule:protein aidb; PDBTitle: crystal structure of alkylation response protein e. coli aidb 42 d1rzhh2 not modelled 13.3 46 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 43 d1xqga_ not modelled 13.2 26 Fold:Serpins Superfamily:Serpins Family:Serpins 44 c2ceoA_ not modelled 13.1 17 PDB header:transport Chain: A: PDB Molecule:thyroxine-binding globulin; PDBTitle: thyroxine-binding globulin complex with thyroxine 45 d1qlpa_ not modelled 13.0 35 Fold:Serpins Superfamily:Serpins Family:Serpins 46 c2ol2A_ not modelled 13.0 57 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:plasma serine protease inhibitor; PDBTitle: high resolution structure of native pci in space group p21 47 c3ndaA_ not modelled 12.6 43 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin-2; PDBTitle: crystal structure of serpin from tick ixodes ricinus 48 d1l9bh2 not modelled 12.1 46 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 49 d1lj5a_ not modelled 12.0 22 Fold:Serpins Superfamily:Serpins Family:Serpins 50 c2ou2A_ not modelled 11.8 33 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3 51 c1yxaB_ not modelled 10.6 39 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:serine (or cysteine) proteinase inhibitor, clade a, member PDBTitle: serpina3n, a murine orthologue of human antichymotrypsin 52 c2hi9C_ not modelled 10.5 41 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of human native protein c inhibitor 53 d1vzsa_ not modelled 10.1 15 Fold:Mitochondrial ATP synthase coupling factor 6 Superfamily:Mitochondrial ATP synthase coupling factor 6 Family:Mitochondrial ATP synthase coupling factor 6 54 c2zmeA_ not modelled 10.0 10 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 55 c2zq5A_ not modelled 10.0 23 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form) 56 d1jb0f_ not modelled 10.0 32 Fold:Single transmembrane helix Superfamily:Subunit III of photosystem I reaction centre, PsaF Family:Subunit III of photosystem I reaction centre, PsaF 57 d1atta_ not modelled 9.8 30 Fold:Serpins Superfamily:Serpins Family:Serpins 58 d1zxoa2 not modelled 9.6 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 59 d2rcrh2 not modelled 9.4 46 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 60 d1r7la_ not modelled 9.4 18 Fold:Bacillus phage protein Superfamily:Bacillus phage protein Family:Bacillus phage protein 61 d2clyc1 not modelled 9.4 19 Fold:Mitochondrial ATP synthase coupling factor 6 Superfamily:Mitochondrial ATP synthase coupling factor 6 Family:Mitochondrial ATP synthase coupling factor 6 62 c3if4C_ not modelled 9.4 32 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:integron cassette protein hfx_cass5; PDBTitle: structure from the mobile metagenome of north west arm2 sewage outfall: integron cassette protein hfx_cass5 63 c2x0bD_ not modelled 9.3 14 PDB header:hydrolase/hormone Chain: D: PDB Molecule:angiotensinogen; PDBTitle: crystal structure of human angiotensinogen complexed with renin 64 d2ozua1 not modelled 9.2 29 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 65 d2giva1 not modelled 9.2 26 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 66 c2givA_ not modelled 9.2 26 PDB header:transferase Chain: A: PDB Molecule:probable histone acetyltransferase myst1; PDBTitle: human myst histone acetyltransferase 1 67 c2o01F_ not modelled 9.2 29 PDB header:photosynthesis Chain: F: PDB Molecule:photosystem i reaction center subunit iii, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 68 c2kjgA_ not modelled 8.7 43 PDB header:metal binding protein Chain: A: PDB Molecule:archaeal protein sso6904; PDBTitle: solution structure of an archaeal protein sso6904 from2 hyperthermophilic sulfolobus solfataricus 69 d1ioma_ not modelled 8.6 12 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 70 c3f02C_ not modelled 8.6 44 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 71 d1st6a7 not modelled 8.6 29 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 72 c9paiB_ not modelled 8.5 22 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365- PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1 73 d1q90d_ not modelled 8.3 18 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 74 c7apiB_ not modelled 8.3 44 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 75 c1qmnA_ not modelled 8.3 30 PDB header:serpin Chain: A: PDB Molecule:alpha-1-antichymotrypsin; PDBTitle: alpha1-antichymotrypsin serpin in the delta conformation2 (partial loop insertion) 76 d1h6ga2 not modelled 8.2 14 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 77 d1fy7a_ not modelled 8.2 29 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 78 c3aqpB_ not modelled 8.0 15 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 79 c2h4qB_ not modelled 7.9 42 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation 80 c3dmpD_ not modelled 7.7 27 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 81 c3ixzB_ not modelled 7.7 10 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 82 d1niga_ not modelled 7.6 22 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Hypothetical protein Ta1238 83 c2yxhB_ not modelled 7.5 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 84 c1jjoE_ not modelled 7.4 33 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 85 c2auhB_ not modelled 7.3 33 PDB header:transferase/signaling protein Chain: B: PDB Molecule:growth factor receptor-bound protein 14; PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase 86 c2l09A_ not modelled 7.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 87 c3cwbT_ not modelled 7.1 29 PDB header:oxidoreductase Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone- PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 88 c2oixA_ not modelled 7.0 24 PDB header:hydrolase Chain: A: PDB Molecule:xanthomonas outer protein d; PDBTitle: xanthomonas xopd c470a mutant 89 c3cuqA_ not modelled 7.0 10 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 90 c2kruA_ not modelled 6.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 91 d1im8a_ not modelled 6.9 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein HI0319 (YecO) 92 d2q7ra1 not modelled 6.9 11 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 93 c2d7cD_ not modelled 6.6 27 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 94 c1hleB_ not modelled 6.6 50 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 95 c1zxoB_ not modelled 6.5 24 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 96 d1k5ja_ not modelled 6.5 17 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Nucleoplasmin-like core domain Family:Nucleoplasmin-like core domain 97 d1knza_ not modelled 6.4 42 Fold:NSP3 homodimer Superfamily:NSP3 homodimer Family:NSP3 homodimer 98 c3hefB_ not modelled 6.3 14 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 99 d1a59a_ not modelled 6.3 17 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0