PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1qmnA_

Fold library id	PDB Header	Molecule	Title
c1qmnA_	PDB header: serpin	Chain: A: PDB Molecule: alpha-1-antichymotrypsin;	PDBTitle: alpha1-antichymotrypsin serpin in the delta conformation2 (partial loop insertion)

Links to external resources
Added to library: Tue Mar 16 13:43:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L A S A N V D F A F S L Y K Q L V L K A P D K N V I F S P P S I S T A L A F L S L G A H N T T L T E I L K G L K F N L T E T S E A E I H Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G
T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F Q H L L R T L N Q S S D E L Q L S M G N A M F V K E Q L S L L D R F T E D A K R L Y G S E A F A T D F Q D S A A A K K L I N D Y V K N G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
G G G
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R G K I T D L I S Q T M M V L V N Y I F F K A K W E M P F D P Q D T H Q S R F Y L S K K K W V M V P M M S L H H L T I P Y F R D E E L S C T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S
G G G
S S S S
T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V V E L K Y T G N A S A L F I L P D Q D K M E E V E A M L L P E T L K R W R D S L E F R E I G E L Y L P K F S I S R D Y N L N D I L L Q L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S S
T T
T T
S S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I E E A F T S K A D L S G I T G A R N L A V S Q V V H K A V L D V F E E G T E A S A A T A L S A L V E T R T I V R F N R P F L M I I V P T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S T T
S S S
S S S S
S
S
T T

. . . . . . . . . 360 . . . . .

Sequence T Q N I F F M S K V T N P K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	A	S	A	N	V	D	F	A	F	S	L	Y	K	Q	L	V	L	K	A	P	D	K	N	V	I	F	S	P	P	S	I	S	T	A	L	A	F	L	S	L	G	A	H	N	T	T	L	T	E	I	L	K	G	L	K	F	N	L	T	E	T	S	E	A	E	I	H	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	S	S																	G	G	G													T	T			T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	Q	H	L	L	R	T	L	N	Q	S	S	D	E	L	Q	L	S	M	G	N	A	M	F	V	K	E	Q	L	S	L	L	D	R	F	T	E	D	A	K	R	L	Y	G	S	E	A	F	A	T	D	F	Q	D	S	A	A	A	K	K	L	I	N	D	Y	V	K	N	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S	S													S	S																								G	G	G													S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	G	K	I	T	D	L	I	S	Q	T	M	M	V	L	V	N	Y	I	F	F	K	A	K	W	E	M	P	F	D	P	Q	D	T	H	Q	S	R	F	Y	L	S	K	K	K	W	V	M	V	P	M	M	S	L	H	H	L	T	I	P	Y	F	R	D	E	E	L	S	C	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									B	S	S				G	G	G								S	S	S	S																					T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	V	E	L	K	Y	T	G	N	A	S	A	L	F	I	L	P	D	Q	D	K	M	E	E	V	E	A	M	L	L	P	E	T	L	K	R	W	R	D	S	L	E	F	R	E	I	G	E	L	Y	L	P	K	F	S	I	S	R	D	Y	N	L	N	D	I	L	L	Q	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						B	S	S	S										T	T							T	T		S										S																													T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	E	E	A	F	T	S	K	A	D	L	S	G	I	T	G	A	R	N	L	A	V	S	Q	V	V	H	K	A	V	L	D	V	F	E	E	G	T	E	A	S	A	A	T	A	L	S	A	L	V	E	T	R	T	I	V	R	F	N	R	P	F	L	M	I	I	V	P	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S	T	T								S	S	S																	S	S				S	S												S							S									T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Sequence	T	Q	N	I	F	F	M	S	K	V	T	N	P	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S						S		T	T