Phyre 2 alignment of P0ABN5 with d1u5ta1

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Job Description | P0ABN5
Confidence | 28.53% | Date | Thu Jan 5 11:15:55 GMT 2012
Rank | 10 | Aligned Residues | 21
% Identity | 24% | Template | d1u5ta1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | Vacuolar sorting protein domain
Resolution | 3.60

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | V | T | M | L | F | N | S | K | L | S | D | D | P | I | Y | R | K | R | L | E | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | F | A | K | K | H | . | N | S | E | L | Q | A | S | P | E | F | R | S | K | F | M | H
Template Known Secondary structure |  |  |  |  |  |  | . | T | T | T | T | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 46 | . | . | . | 50 |  | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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