15/01/2012 20:23:06 : INFO  : Run start: Sun Jan 15 20:23:06 GMT 2012
15/01/2012 20:23:10 : INFO  : Initialised job
15/01/2012 20:23:11 : INFO  : Renaming log file 'phyre2_20120115_202305.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/79e6002ab1ce318c/phyre_20120115_202305.log'
15/01/2012 20:23:11 : INFO  : Initialised job:
Sequence
>batch____
MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAI
SAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAK
EQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVL
VMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIY
AIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICI
LGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALA
LNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVAL
AVCFGFVLGSFML

15/01/2012 20:23:12 : INFO  : Checked sequence
15/01/2012 20:23:14 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 20:23:15 : INFO  : PSI-BLAST 3 iterations
15/01/2012 20:25:55 : INFO  : PSI-BLAST 5 iterations
15/01/2012 20:27:54 : INFO  : Finished PSI-BLAST
15/01/2012 20:27:56 : INFO  : Running Buildali to generate a3m file
15/01/2012 20:30:59 : INFO  : Converting to HMM
15/01/2012 20:31:00 : INFO  : Calibrating HMM
15/01/2012 20:31:18 : INFO  : Searching HMM database
15/01/2012 20:41:35 : INFO  : Finished buildali
15/01/2012 20:41:36 : INFO  : Predicting secondary structure
15/01/2012 20:41:41 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 20:41:42 : INFO  : Predicting Disordered regions
15/01/2012 20:41:44 : INFO  : Predicted Disorder (Disopred)
15/01/2012 20:41:45 : INFO  : Running memsat_svm check
15/01/2012 20:44:10 : INFO  : Running memsat_svm full
15/01/2012 20:47:28 : INFO  : Predicted Transmembrane (memsat_svm) ID '79e6002ab1ce318c'
15/01/2012 20:47:29 : INFO  : Initialising fold library search
15/01/2012 20:47:31 : INFO  : Initialised search input
15/01/2012 20:47:32 : INFO  : Building Ensemble models
15/01/2012 20:47:34 : INFO  : Building hh.d1zbsa1.model.1.pdb
15/01/2012 20:47:44 : INFO  : Building hh.c2zv6A_.model.2.pdb
15/01/2012 20:47:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/79e6002ab1ce318c/hh.c2zv6A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/79e6002ab1ce318c/c2zv6A_.2.pdb
15/01/2012 20:47:57 : INFO  : Building hh.d1by7a_.model.3.pdb
15/01/2012 20:48:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/79e6002ab1ce318c/hh.d1by7a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/79e6002ab1ce318c/d1by7a_.3.pdb
15/01/2012 20:48:06 : INFO  : Building d1zbsa1.1.pdb
15/01/2012 20:48:15 : INFO  : Building c2zv6A_.2.pdb
15/01/2012 20:48:24 : INFO  : Building d1by7a_.3.pdb
15/01/2012 20:48:32 : INFO  : Building c1sngA_.4.pdb
15/01/2012 20:48:40 : INFO  : Building c1q40C_.5.pdb
15/01/2012 20:48:48 : INFO  : Building d1q42a_.6.pdb
15/01/2012 20:48:57 : INFO  : Building c2uv1B_.7.pdb
15/01/2012 20:49:07 : INFO  : Building c3o8jH_.8.pdb
15/01/2012 20:49:16 : INFO  : Building c2oayA_.9.pdb
15/01/2012 20:49:23 : INFO  : Building d1u5ta1.10.pdb
15/01/2012 20:49:32 : INFO  : Building c3le2A_.11.pdb
15/01/2012 20:49:39 : INFO  : Building c3ozqA_.12.pdb
15/01/2012 20:49:45 : INFO  : Building c3pzfA_.13.pdb
15/01/2012 20:49:54 : INFO  : Building c2vh4B_.14.pdb
15/01/2012 20:50:01 : INFO  : Building d1imva_.15.pdb
15/01/2012 20:50:09 : INFO  : Building c2r9yA_.16.pdb
15/01/2012 20:50:16 : INFO  : Building d2nwwa1.17.pdb
15/01/2012 20:50:23 : INFO  : Building d1k82a1.18.pdb
15/01/2012 20:50:31 : INFO  : Building c2dutC_.19.pdb
15/01/2012 20:50:38 : INFO  : Building d1af7a2.20.pdb
15/01/2012 20:51:10 : INFO  : Finished HH model building
15/01/2012 20:51:11 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 20:52:13 : INFO  : html domain output complete ID '79e6002ab1ce318c'
15/01/2012 20:56:37 : INFO  : Run end  : Sun Jan 15 20:56:37 GMT 2012
