Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	P	G	E	E	L	Q	E	T	L	T	E	L	D	D	R	A	V	V	D	Y	L	I	K	N	P	E	F	F	I	R	N	A	R	A	V	E	A	I	R	V	P	H	P	V	R	G	T	V	S	L	V	E	W	H	M	A	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																												?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	R	N	H	I	H	V	L	E	E	N	M	A	L	L	M	E	Q	A	I	A	N	E	G	L	F	Y	R	L	L	Y	L	Q	R	S	L	T	A	A	S	S	L	D	D	M	L	M	R	F	H	R	W	A	R	D	L	G	L	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	S	L	R	L	F	P	D	R	W	R	L	G	A	P	S	N	H	T	H	L	A	L	S	R	Q	S	F	E	P	L	R	I	Q	R	L	G	Q	E	Q	H	Y	L	G	P	L	N	G	P	E	L	L	V	V	L	P	E	A	K	A
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence		V	G	S	V	A	M	S	M	L	G	S	D	A	D	L	G	V	V	L	F	T	S	R	D	A	S	H	Y	Q	Q	G	Q	G	T	Q	L	L	H	E	I	A	L	M	L	P	E	L	L	E	R	W	I	E	R	V
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3e98 chain B Region: 49 - 231 Aligned: 171 Modelled: 171 Confidence: 100.0% Identity: 27% PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution Phyre2 PDB 3p01 chain C Region: 62 - 230 Aligned: 157 Modelled: 169 Confidence: 99.0% Identity: 13% PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 Phyre2 PDB 2vea chain A domain 1 Region: 86 - 230 Aligned: 144 Modelled: 145 Confidence: 99.0% Identity: 10% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3p01 chain A Region: 63 - 231 Aligned: 164 Modelled: 169 Confidence: 99.0% Identity: 13% PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 Phyre2 PDB 3mmh chain A Region: 83 - 230 Aligned: 146 Modelled: 148 Confidence: 98.9% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate Phyre2 PDB 3ci6 chain B Region: 82 - 231 Aligned: 148 Modelled: 148 Confidence: 98.9% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase Phyre2 PDB 1vhm chain B Region: 81 - 230 Aligned: 148 Modelled: 150 Confidence: 98.9% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 1vhm chain A Region: 83 - 230 Aligned: 146 Modelled: 148 Confidence: 98.9% Identity: 13% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 2o9c chain A domain 1 Region: 87 - 230 Aligned: 142 Modelled: 144 Confidence: 98.9% Identity: 14% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3ksi chain A Region: 87 - 228 Aligned: 140 Modelled: 142 Confidence: 98.8% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) Phyre2 PDB 3trc chain A Region: 83 - 231 Aligned: 148 Modelled: 147 Confidence: 98.8% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii Phyre2 PDB 2ool chain A domain 1 Region: 80 - 230 Aligned: 149 Modelled: 150 Confidence: 98.8% Identity: 15% Fold: Profilin-like Superfamily: GAF domain-like Family: GAF domain Phyre2 PDB 3k2n chain B Region: 82 - 230 Aligned: 147 Modelled: 149 Confidence: 98.7% Identity: 12% PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls Phyre2 PDB 3o5y chain A Region: 100 - 230 Aligned: 130 Modelled: 130 Confidence: 98.6% Identity: 14% PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a Phyre2 PDB 3hcy chain B Region: 99 - 230 Aligned: 128 Modelled: 132 Confidence: 98.6% Identity: 10% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 Phyre2 PDB 1mc0 chain A Region: 55 - 230 Aligned: 176 Modelled: 176 Confidence: 98.5% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains Phyre2 PDB 3oov chain A Region: 91 - 230 Aligned: 140 Modelled: 140 Confidence: 98.4% Identity: 12% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287 Phyre2 PDB 3e0y chain A Region: 89 - 231 Aligned: 136 Modelled: 143 Confidence: 98.4% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca Phyre2 PDB 1ykd chain B Region: 45 - 230 Aligned: 185 Modelled: 186 Confidence: 98.3% Identity: 13% PDB header:lyase Chain: B: PDB Molecule:adenylate cyclase; PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization Phyre2 PDB 2ool chain A Region: 82 - 231 Aligned: 149 Modelled: 149 Confidence: 98.3% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris Phyre2 PDB 1ube chain A domain 2 Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 55.0% Identity: 13% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 1mo6 chain A domain 2 Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 54.2% Identity: 13% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 1u94 chain A domain 2 Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 52.1% Identity: 25% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 PDB 2v0e chain A domain 1 Region: 18 - 35 Aligned: 18 Modelled: 18 Confidence: 50.1% Identity: 17% Fold: GYF/BRK domain-like Superfamily: BRK domain-like Family: BRK domain-like Phyre2 1 c3e98B_ 2 c3p01C_ 3 d2veaa1 4 c3p01A_ 5 c3mmhA_ 6 c3ci6B_ 7 c1vhmB_ 8 d1vhma_ 9 d2o9ca1 10 c3ksiA_ 11 c3trcA_ 12 d2oola1 13 c3k2nB_ 14 c3o5yA_ 15 c3hcyB_ 16 c1mc0A_ 17 c3oovA_ 18 c3e0yA_ 19 c1ykdB_ 20 c2oolA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 d1ubea2 44 d1mo6a2 45 d1u94a2 46 d2v0ea1 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3e98B_ 100.0 27 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 2 c3p01C_ 99.0 13 PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 3 d2veaa1 99.0 10 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 4 c3p01A_ 99.0 13 PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 5 c3mmhA_ 98.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate 6 c3ci6B_ 98.9 15 PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase 7 c1vhmB_ 98.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein 8 d1vhma_ 98.9 13 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 9 d2o9ca1 98.9 14 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 10 c3ksiA_ 98.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 11 c3trcA_ 98.8 13 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii 12 d2oola1 98.8 15 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 13 c3k2nB_ 98.7 12 PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls 14 c3o5yA_ 98.6 14 PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a 15 c3hcyB_ 98.6 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 16 c1mc0A_ 98.5 9 PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains 17 c3oovA_ 98.4 12 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287 18 c3e0yA_ 98.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca 19 c1ykdB_ 98.3 13 PDB header:lyase Chain: B: PDB Molecule:adenylate cyclase; PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization 20 c2oolA_ 98.3 11 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 21 d2k2na1 not modelled 98.3 18 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 22 d1f5ma_ not modelled 98.3 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 23 d3c2wa1 not modelled 98.3 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 24 c3eeaB_ not modelled 98.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens 25 c3mf0A_ not modelled 98.2 9 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of pde5a gaf domain (89-518) 26 c2lb5A_ not modelled 98.1 14 PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form 27 c2zmfA_ not modelled 98.1 12 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a 28 c2o9bA_ not modelled 98.1 11 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 29 c2qybA_ not modelled 98.1 14 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein, putative; PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca 30 c2vjwA_ not modelled 98.0 12 PDB header:hydrolase Chain: A: PDB Molecule:gaf family protein; PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis 31 c3ibjB_ not modelled 97.9 9 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: x-ray structure of pde2a 32 c3dbaB_ not modelled 97.9 8 PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c 33 c2w3gA_ not modelled 97.8 7 PDB header:transferase Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss 34 d1mc0a1 not modelled 97.8 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 35 c3c2wB_ not modelled 97.7 8 PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state 36 c2veaA_ not modelled 97.3 10 PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. 37 d1mc0a2 not modelled 97.2 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 38 c2k31A_ not modelled 96.9 7 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific; PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5 39 c2xssB_ not modelled 95.9 7 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase; PDBTitle: crystal structure of gafb from the human phosphodiesterase 5 40 c2w1tB_ not modelled 81.4 13 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 41 c2w1rA_ not modelled 80.1 16 PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt 42 c2gx5B_ not modelled 65.7 14 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 43 d1ubea2 55.0 13 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 44 d1mo6a2 54.2 13 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 45 d1u94a2 52.1 25 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 46 d2v0ea1 50.1 17 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 47 d1xp8a2 not modelled 49.8 19 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 48 c2ckaA_ not modelled 48.3 31 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 49 d2ckaa1 not modelled 48.3 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 50 d2pnwa1 not modelled 47.2 11 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 51 c1pk1B_ not modelled 46.4 9 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 52 c2avxA_ not modelled 45.9 14 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sdia; PDBTitle: solution structure of e coli sdia1-171 53 d1l3la2 not modelled 45.5 12 Fold:Profilin-like Superfamily:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Family:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors 54 c2ckcA_ not modelled 45.0 17 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 55 d2ckca1 not modelled 45.0 17 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 56 d1pk3a1 not modelled 42.4 12 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 57 d2g5da1 not modelled 42.1 21 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 58 d1i27a_ not modelled 40.9 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 59 d2dl6a1 not modelled 37.8 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 60 c2j5uB_ not modelled 36.6 13 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 61 c2wpyA_ not modelled 35.3 27 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with one vxxnxxx motif2 coordinating chloride 62 c3c0rC_ not modelled 35.2 19 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 63 c1dipA_ not modelled 34.3 22 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 64 d2ia7a1 not modelled 33.1 22 Fold:gpW/gp25-like Superfamily:gpW/gp25-like Family:gpW/gp25-like 65 c3hefB_ not modelled 32.8 31 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 66 c3pfyA_ not modelled 32.8 35 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 67 c2k7rA_ not modelled 32.6 33 PDB header:replication Chain: A: PDB Molecule:primosomal protein dnai; PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai 68 c3fkhB_ not modelled 31.9 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution 69 d2ff4a1 not modelled 31.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 70 d2v0fa1 not modelled 29.9 38 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 71 c3eoiB_ not modelled 24.7 46 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:pilm; PDBTitle: crystal structure of putative protein pilm from escherichia coli b7a 72 c1ci6B_ not modelled 24.0 22 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 73 c3iwfA_ not modelled 22.6 3 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 74 d1gxqa_ not modelled 22.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 75 c1swiB_ not modelled 21.9 27 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 76 c1rb4A_ not modelled 21.9 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 77 d2o3fa1 not modelled 21.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:RpiR-like 78 c2o3fC_ not modelled 21.6 25 PDB header:transcription Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh; PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168. 79 c2yxlA_ not modelled 21.0 27 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 80 c1rb6B_ not modelled 21.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 81 c1rb4B_ not modelled 21.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 82 c1rb5C_ not modelled 21.0 27 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 83 c2eanA_ not modelled 20.7 14 PDB header:signaling protein Chain: A: PDB Molecule:connector enhancer of kinase suppressor of ras 2; PDBTitle: solution structure of the n-terminal sam-domain of human2 kiaa0902 protein (connector enhancer of kinase suppressor3 of ras 2) 84 c2uv0G_ not modelled 20.4 15 PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer 85 c1rb5B_ not modelled 20.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 86 c1rb6A_ not modelled 20.0 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 87 c1rb5A_ not modelled 20.0 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 88 c2oqqB_ not modelled 19.9 33 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 89 c3m6wA_ not modelled 18.9 33 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 90 d2o34a1 not modelled 18.2 14 Fold:T-fold Superfamily:ApbE-like Family:DVU1097-like 91 c2wpzA_ not modelled 18.1 23 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 92 c2nytB_ not modelled 17.9 15 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 93 c3cp3A_ not modelled 17.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae 94 c2pywA_ not modelled 17.0 25 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of a. thaliana 5-methylthioribose kinase in complex with adp2 and mtr 95 c2wpzB_ not modelled 16.9 23 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 96 d1pvea_ not modelled 16.8 25 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 97 d2vkva2 not modelled 16.7 9 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 98 c2xh3B_ not modelled 16.6 15 PDB header:hydrolase Chain: B: PDB Molecule:spd1 nuclease; PDBTitle: extracellular nuclease 99 c2nt8A_ not modelled 16.5 17 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0