Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	D	D	D	G	Y	R	P	N	V	G	I	V	I	C	N	R	Q	G	Q	V	M	W	A	R	R	F	G	Q	H	S	W	Q	F	P	Q	G	G	I	N	P	G	E	S	A	E	Q	A	M	Y	R	E	L	F	E	E	V	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	R	K	D	V	R	I	L	A	S	T	R	N	W	L	R	Y	K	L	P	K	R	L	V	R	W	D	T	K	P	V	C	I	G	Q	K	Q	K	W	F	L	L	Q	L	V	S	G	D	A	E	I	N	M	Q	T	S	S	T	P	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Sequence		F	D	G	W	R	W	V	S	Y	W	Y	P	V	R	Q	V	V	S	F	K	R	D	V	Y	R	R	V	M	K	E	F	A	S	V	V	M	S	L	Q	E	N	T	P	K	P	Q	N	A	S	A	Y	R	R	K	R	G
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kdv chain A Region: 1 - 164 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli Phyre2 PDB 1jkn chain A Region: 5 - 155 Aligned: 149 Modelled: 151 Confidence: 100.0% Identity: 39% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2jvb chain A Region: 9 - 164 Aligned: 138 Modelled: 138 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 Phyre2 PDB 1xsb chain A Region: 4 - 160 Aligned: 139 Modelled: 146 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3fjy chain B Region: 9 - 162 Aligned: 149 Modelled: 154 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis Phyre2 PDB 2o1c chain B Region: 5 - 151 Aligned: 138 Modelled: 147 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 1ktg chain A Region: 9 - 157 Aligned: 130 Modelled: 149 Confidence: 99.9% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3son chain B Region: 8 - 158 Aligned: 137 Modelled: 150 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution Phyre2 PDB 2pq1 chain B Region: 10 - 159 Aligned: 128 Modelled: 133 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 2azw chain A domain 1 Region: 4 - 153 Aligned: 131 Modelled: 150 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2b0v chain A domain 1 Region: 8 - 153 Aligned: 129 Modelled: 129 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3fcm chain A Region: 10 - 152 Aligned: 133 Modelled: 142 Confidence: 99.9% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens Phyre2 PDB 2fvv chain A domain 1 Region: 2 - 149 Aligned: 127 Modelled: 131 Confidence: 99.9% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fvv chain A Region: 2 - 149 Aligned: 127 Modelled: 131 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 Phyre2 PDB 1sjy chain A Region: 8 - 163 Aligned: 139 Modelled: 142 Confidence: 99.9% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2qkm chain F Region: 9 - 172 Aligned: 146 Modelled: 148 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex Phyre2 PDB 3dku chain B Region: 7 - 153 Aligned: 128 Modelled: 133 Confidence: 99.8% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 3h95 chain A Region: 10 - 163 Aligned: 127 Modelled: 132 Confidence: 99.8% Identity: 17% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3q4i chain A Region: 4 - 162 Aligned: 139 Modelled: 159 Confidence: 99.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ Phyre2 PDB 3grn chain B Region: 4 - 153 Aligned: 127 Modelled: 135 Confidence: 99.8% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 1 c2kdvA_ 2 d1jkna_ 3 c2jvbA_ 4 d1xsba_ 5 c3fjyB_ 6 c2o1cB_ 7 d1ktga_ 8 c3sonB_ 9 c2pq1B_ 10 d2azwa1 11 d2b0va1 12 c3fcmA_ 13 d2fvva1 14 c2fvvA_ 15 d1sjya_ 16 c2qkmF_ 17 c3dkuB_ 18 c3h95A_ 19 c3q4iA_ 20 c3grnB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kdvA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 2 d1jkna_ 100.0 39 Fold:Nudix Superfamily:Nudix Family:MutT-like 3 c2jvbA_ 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 4 d1xsba_ 99.9 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 5 c3fjyB_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 6 c2o1cB_ 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 7 d1ktga_ 99.9 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 8 c3sonB_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 9 c2pq1B_ 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 10 d2azwa1 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 d2b0va1 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 12 c3fcmA_ 99.9 11 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 13 d2fvva1 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 14 c2fvvA_ 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 15 d1sjya_ 99.9 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 16 c2qkmF_ 99.9 21 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 17 c3dkuB_ 99.8 19 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 18 c3h95A_ 99.8 17 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 19 c3q4iA_ 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 20 c3grnB_ 99.8 25 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 21 d1vcda1 not modelled 99.8 26 Fold:Nudix Superfamily:Nudix Family:MutT-like 22 d1vk6a2 not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 23 d1ryaa_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 24 d2a6ta2 not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 25 d2fb1a2 not modelled 99.8 12 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 26 c2gb5B_ not modelled 99.8 24 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 27 d1k2ea_ not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 28 d2fkba1 not modelled 99.8 14 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 29 d1nqza_ not modelled 99.8 26 Fold:Nudix Superfamily:Nudix Family:MutT-like 30 c3n77B_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 31 d2b06a1 not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 32 c3o8sA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 33 c3cngC_ not modelled 99.8 20 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 34 c3gwyA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 35 c3gg6A_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 36 c3r03B_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 37 c3gz8C_ not modelled 99.8 15 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 38 c3hhjA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 39 c3f6aA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 40 d1ppva_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 41 c2qjoB_ not modelled 99.8 21 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 42 c3fk9B_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 43 c3ef5A_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 44 c2yvoA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 45 d1hzta_ not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 46 c2r5wA_ not modelled 99.8 18 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 47 c3edsA_ not modelled 99.8 23 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 48 c2fb1A_ not modelled 99.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 49 c2pqvA_ not modelled 99.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 50 d2o5fa1 not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 51 d1puna_ not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 52 c2w4eA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 53 c3exqA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 54 c3i9xA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 55 c3gz6A_ not modelled 99.8 17 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 56 c2yyhC_ not modelled 99.8 13 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 57 c3id9B_ not modelled 99.7 18 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 58 d1vhza_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 59 d1g0sa_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 60 c3bm4B_ not modelled 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 61 d1irya_ not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 62 d1mqea_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 63 d1v8ya_ not modelled 99.7 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 64 c3rh7A_ not modelled 99.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 65 d2fmla2 not modelled 99.7 23 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 66 c3f13A_ not modelled 99.7 23 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 67 c3e57A_ not modelled 99.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 68 d1viua_ not modelled 99.6 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 69 c3q91D_ not modelled 99.6 16 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 70 c2fmlB_ not modelled 99.6 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 71 d1x51a1 not modelled 99.6 16 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 72 c2i6kA_ not modelled 99.6 14 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 73 c1rrqA_ not modelled 99.6 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 74 d1q33a_ not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 75 d1u20a1 not modelled 99.5 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 76 c2pnyA_ not modelled 99.5 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 77 d1rrqa2 not modelled 99.5 19 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 78 c3qsjA_ not modelled 99.5 26 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 79 c2j8qB_ not modelled 99.5 18 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 80 c3dupB_ not modelled 99.3 16 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 81 c3couA_ not modelled 99.0 20 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.6 22 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 97.6 26 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 c3flcX_ not modelled 44.2 14 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 85 c1glbG_ not modelled 41.5 8 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 86 d2p3ra1 not modelled 40.2 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 87 c2zf5O_ not modelled 39.4 8 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 88 c3g25B_ not modelled 38.7 12 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 89 c3ezwD_ not modelled 36.1 8 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 90 c3d0jA_ not modelled 29.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 91 c3gg4B_ not modelled 29.3 10 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 92 d1gw5s_ not modelled 28.2 37 Fold:Profilin-like Superfamily:SNARE-like Family:Clathrin coat assembly domain 93 c2d4wA_ not modelled 26.8 9 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 94 c3hz6A_ not modelled 26.6 11 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 95 c2hf6A_ not modelled 24.9 20 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit zeta-1; PDBTitle: solution structure of human zeta-cop 96 c2dpnB_ not modelled 23.3 13 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 97 c3svkB_ not modelled 23.1 10 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: crystal structure of acetyl-coa acetyltransferase from mycobacterium2 avium 98 c1w63T_ not modelled 23.0 16 PDB header:endocytosis Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a PDBTitle: ap1 clathrin adaptor core 99 c2w4lC_ not modelled 21.6 17 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0