Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	K	D	Y	Y	A	I	M	G	V	K	P	T	D	D	L	K	T	I	K	T	A	Y	R	R	L	A	R	K	Y	H	P	D	V	S	K	E	P	D	A	E	A	R	F	K	E	V	A	E	A	W	E	V	L	S	D	E	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																												?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	R	A	E	Y	D	Q	M	W	Q	H	R	N	D	P	Q	F	N	R	Q	F	H	H	G	D	G	Q	S	F	N	A	E	D	F	D	D	I	F	S	S	I	F	G	Q	H	A	R	Q	S	R	Q	R	P	A	T	R	G	H	D	I
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	I	E	V	A	V	F	L	E	E	T	L	T	E	H	K	R	T	I	S	Y	N	L	P	V	Y	N	A	F	G	M	I	E	Q	E	I	P	K	T	L	N	V	K	I	P	A	G	V	G	N	G	Q	R	I	R	L	K	G	Q	G
Secondary structure
SS confidence
Disorder																																	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	P	G	E	N	G	G	P	N	G	D	L	W	L	V	I	H	I	A	P	H	P	L	F	D	I	V	G	Q	D	L	E	I	V	V	P	V	S	P	W	E	A	A	L	G	A	K	V	T	V	P	T	L	K	E	S	I	L	L	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	P	P	G	S	Q	A	G	Q	R	L	R	V	K	G	K	G	L	V	S	K	K	Q	T	G	D	L	Y	A	V	L	K	I	V	M	P	P	K	P	D	E	N	T	A	A	L	W	Q	Q	L	A	D	A	Q	S	S	F	D	P	R
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?																															?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		K	D	W	G	K	A
Secondary structure
SS confidence
Disorder			?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3lz8 chain A Region: 114 - 303 Aligned: 186 Modelled: 190 Confidence: 100.0% Identity: 82% PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution. Phyre2 PDB 2q2g chain A Region: 118 - 290 Aligned: 171 Modelled: 171 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment); PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800 Phyre2 PDB 2qld chain A Region: 118 - 288 Aligned: 167 Modelled: 171 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 1; PDBTitle: human hsp40 hdj1 Phyre2 PDB 1nlt chain A Region: 103 - 277 Aligned: 174 Modelled: 175 Confidence: 100.0% Identity: 22% PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 Phyre2 PDB 2b26 chain A Region: 118 - 288 Aligned: 153 Modelled: 171 Confidence: 100.0% Identity: 22% PDB header:chaperone/protein transport Chain: A: PDB Molecule:sis1 protein; PDBTitle: the crystal structure of the protein complex of yeast hsp402 sis1 and hsp70 ssa1 Phyre2 PDB 3i38 chain D Region: 201 - 303 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 80% PDB header:chaperone Chain: D: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain K Region: 200 - 303 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 79% PDB header:chaperone Chain: K: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain G Region: 201 - 303 Aligned: 103 Modelled: 103 Confidence: 99.9% Identity: 80% PDB header:chaperone Chain: G: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain A Region: 201 - 303 Aligned: 103 Modelled: 103 Confidence: 99.9% Identity: 80% PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain B Region: 201 - 303 Aligned: 101 Modelled: 103 Confidence: 99.9% Identity: 79% PDB header:chaperone Chain: B: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain J Region: 201 - 303 Aligned: 101 Modelled: 103 Confidence: 99.9% Identity: 79% PDB header:chaperone Chain: J: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain F Region: 201 - 303 Aligned: 100 Modelled: 103 Confidence: 99.9% Identity: 80% PDB header:chaperone Chain: F: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3apq chain B Region: 3 - 81 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 Phyre2 PDB 3i38 chain H Region: 203 - 303 Aligned: 99 Modelled: 101 Confidence: 99.9% Identity: 79% PDB header:chaperone Chain: H: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain E Region: 202 - 303 Aligned: 98 Modelled: 102 Confidence: 99.9% Identity: 81% PDB header:chaperone Chain: E: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain C Region: 202 - 303 Aligned: 98 Modelled: 102 Confidence: 99.9% Identity: 81% PDB header:chaperone Chain: C: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain L Region: 202 - 303 Aligned: 98 Modelled: 102 Confidence: 99.9% Identity: 81% PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3i38 chain I Region: 202 - 303 Aligned: 96 Modelled: 102 Confidence: 99.9% Identity: 78% PDB header:chaperone Chain: I: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 2l6l chain A Region: 1 - 133 Aligned: 133 Modelled: 133 Confidence: 99.9% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 Phyre2 PDB 2kqx chain A Region: 2 - 71 Aligned: 70 Modelled: 70 Confidence: 99.9% Identity: 100% PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa Phyre2 1 c3lz8A_ 2 c2q2gA_ 3 c2qldA_ 4 c1nltA_ 5 c2b26A_ 6 c3i38D_ 7 c3i38K_ 8 c3i38G_ 9 c3i38A_ 10 c3i38B_ 11 c3i38J_ 12 c3i38F_ 13 c3apqB_ 14 c3i38H_ 15 c3i38E_ 16 c3i38C_ 17 c3i38L_ 18 c3i38I_ 19 c2l6lA_ 20 c2kqxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3lz8A_ 100.0 82 PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution. 2 c2q2gA_ 100.0 23 PDB header:chaperone Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment); PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800 3 c2qldA_ 100.0 23 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 1; PDBTitle: human hsp40 hdj1 4 c1nltA_ 100.0 22 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 5 c2b26A_ 100.0 22 PDB header:chaperone/protein transport Chain: A: PDB Molecule:sis1 protein; PDBTitle: the crystal structure of the protein complex of yeast hsp402 sis1 and hsp70 ssa1 6 c3i38D_ 100.0 80 PDB header:chaperone Chain: D: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 7 c3i38K_ 99.9 79 PDB header:chaperone Chain: K: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 8 c3i38G_ 99.9 80 PDB header:chaperone Chain: G: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 9 c3i38A_ 99.9 80 PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 10 c3i38B_ 99.9 79 PDB header:chaperone Chain: B: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 11 c3i38J_ 99.9 79 PDB header:chaperone Chain: J: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 12 c3i38F_ 99.9 80 PDB header:chaperone Chain: F: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 13 c3apqB_ 99.9 30 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 14 c3i38H_ 99.9 79 PDB header:chaperone Chain: H: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 15 c3i38E_ 99.9 81 PDB header:chaperone Chain: E: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 16 c3i38C_ 99.9 81 PDB header:chaperone Chain: C: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 17 c3i38L_ 99.9 81 PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 18 c3i38I_ 99.9 78 PDB header:chaperone Chain: I: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 19 c2l6lA_ 99.9 21 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 20 c2kqxA_ 99.9 100 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 21 c2ctqA_ not modelled 99.9 28 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 22 d1hdja_ not modelled 99.9 45 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 23 c1fpoA_ not modelled 99.9 24 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli 24 c2dmxA_ not modelled 99.9 35 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 25 c3bvoA_ not modelled 99.9 21 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 26 c2yuaA_ not modelled 99.9 28 PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein 27 c3hhoA_ not modelled 99.9 29 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae 28 c2ctrA_ not modelled 99.9 42 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 29 c2ctwA_ not modelled 99.9 33 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 30 d1c3ga2 not modelled 99.8 26 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 31 c2lgwA_ not modelled 99.8 45 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 32 d1xbla_ not modelled 99.8 49 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 33 c2cugA_ not modelled 99.8 39 PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 34 c2ctpA_ not modelled 99.8 39 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12 35 c2o37A_ not modelled 99.8 33 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 36 c2qsaA_ not modelled 99.8 39 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. 37 c2dn9A_ not modelled 99.8 45 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 38 c1xaoA_ not modelled 99.8 18 PDB header:chaperone Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: hsp40-ydj1 dimerization domain 39 d1gh6a_ not modelled 99.8 14 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 40 c1bq0A_ not modelled 99.8 47 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 41 c2ys8A_ not modelled 99.8 34 PDB header:protein binding Chain: A: PDB Molecule:rab-related gtp-binding protein rabj; PDBTitle: solution structure of the dnaj-like domain from human ras-2 associated protein rap1 42 c2ochA_ not modelled 99.8 45 PDB header:chaperone Chain: A: PDB Molecule:hypothetical protein dnj-12; PDBTitle: j-domain of dnj-12 from caenorhabditis elegans 43 d1iura_ not modelled 99.8 26 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 44 d1wjza_ not modelled 99.8 28 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 45 c2pf4E_ not modelled 99.7 15 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 46 d1nlta2 not modelled 99.7 24 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 47 d1fpoa1 not modelled 99.7 31 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 48 d1fafa_ not modelled 99.7 15 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 49 c2guzO_ not modelled 99.6 22 PDB header:chaperone, protein transport Chain: O: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: structure of the tim14-tim16 complex of the mitochondrial2 protein import motor 50 d1nz6a_ not modelled 99.5 23 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 51 d1n4ca_ not modelled 99.5 21 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 52 c2y4tA_ not modelled 99.4 50 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk) 53 d1c3ga1 not modelled 99.4 21 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 54 c3apoA_ not modelled 99.4 43 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of full-length erdj5 55 c2guzD_ not modelled 99.3 18 PDB header:chaperone, protein transport Chain: D: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: structure of the tim14-tim16 complex of the mitochondrial2 protein import motor 56 c3ag7A_ not modelled 99.2 20 PDB header:plant protein Chain: A: PDB Molecule:putative uncharacterized protein f9e10.5; PDBTitle: an auxilin-like j-domain containing protein, jac1 j-domain 57 d1nlta1 not modelled 99.2 20 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 58 c3uo2A_ not modelled 98.8 24 PDB header:chaperone Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial; PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae 59 c3epvB_ not modelled 60.3 18 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 60 c2cttA_ not modelled 54.0 6 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of zinc finger domain from human dnaj2 subfamily a menber 3 61 d2q37a1 not modelled 49.6 21 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 62 c2q37A_ not modelled 49.6 21 PDB header:plant protein, lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin 63 d2o8ia1 not modelled 49.1 31 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 64 d2o70a1 not modelled 45.6 10 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 65 d1ug2a_ not modelled 44.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 66 d1nlta3 not modelled 40.5 9 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 67 c2cs1A_ not modelled 40.1 21 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 68 c3m1gC_ not modelled 37.8 28 PDB header:transferase Chain: C: PDB Molecule:putative glutathione s-transferase; PDBTitle: the structure of a putative glutathione s-transferase from2 corynebacterium glutamicum 69 c2bl0B_ not modelled 37.6 16 PDB header:muscle protein Chain: B: PDB Molecule:myosin regulatory light chain; PDBTitle: physarum polycephalum myosin ii regulatory domain 70 c2jucA_ not modelled 37.0 12 PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast 71 c3orjA_ not modelled 35.5 22 PDB header:sugar binding protein Chain: A: PDB Molecule:sugar-binding protein; PDBTitle: crystal structure of a sugar-binding protein (bacova_04391) from2 bacteroides ovatus at 2.16 a resolution 72 d3saka_ not modelled 35.1 42 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 73 c2crjA_ not modelled 34.3 21 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 74 c2co9A_ not modelled 33.6 19 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 75 c3nv4A_ not modelled 33.5 17 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin 9 short isoform variant; PDBTitle: crystal structure of human galectin-9 c-terminal crd in complex with2 sialyllactose 76 c1wz6A_ not modelled 33.1 24 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 77 d1exka_ not modelled 32.7 13 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 78 c2ww9K_ not modelled 31.9 29 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l25; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 79 c3najA_ not modelled 31.7 11 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-8; PDBTitle: crystal structure of a protease-resistant mutant form of human2 galectin-8 80 c1u5tA_ not modelled 30.4 11 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 81 d1vqos1 not modelled 29.1 12 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 82 d1h8ba_ not modelled 28.3 28 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 83 c2zgtB_ not modelled 28.3 7 PDB header:hydrolase Chain: B: PDB Molecule:anti-tumor lectin; PDBTitle: crystal structure of agrocybe aegerita lectin aal mutant2 f93g 84 c2e6oA_ not modelled 27.2 19 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 85 c3fn2A_ not modelled 26.5 25 PDB header:transferase Chain: A: PDB Molecule:putative sensor histidine kinase domain; PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940 86 c2go54_ not modelled 25.3 35 PDB header:translation/rna Chain: 4: PDB Molecule:ribosomal protein l23; PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex 87 c2d6lX_ not modelled 24.5 14 PDB header:sugar binding protein Chain: X: PDB Molecule:lectin, galactose binding, soluble 9; PDBTitle: crystal structure of mouse galectin-9 n-terminal crd2 (crystal form 2) 88 d1cf7a_ not modelled 24.5 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 89 d2zjrq1 not modelled 24.4 29 Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:L23p 90 d1wgfa_ not modelled 24.3 21 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 91 c2zkrs_ not modelled 24.1 29 PDB header:ribosomal protein/rna Chain: S: PDB Molecule:rna expansion segment es39 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 c3dkqB_ not modelled 23.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 93 c3u2bC_ not modelled 23.5 19 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 94 d2gala_ not modelled 22.8 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 95 c2j11D_ not modelled 22.8 42 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant y327s t329g q331g 96 d2cqna1 not modelled 22.5 16 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 97 c2rq5A_ not modelled 22.3 20 PDB header:transcription Chain: A: PDB Molecule:protein jumonji; PDBTitle: solution structure of the at-rich interaction domain (arid)2 of jumonji/jarid2 98 d1aiea_ not modelled 22.1 42 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 99 c4a17R_ not modelled 21.7 29 PDB header:ribosome Chain: R: PDB Molecule:rpl23a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 100 c2j10B_ not modelled 21.5 42 PDB header:transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 101 c2j10A_ not modelled 21.5 42 PDB header:transcription Chain: A: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 102 c2j10D_ not modelled 21.5 42 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 103 d1i32a2 not modelled 20.4 14 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0