Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	L	E	Q	K	L	T	E	M	I	T	A	P	V	E	A	L	G	F	E	L	V	G	I	E	F	I	R	G	R	T	S	T	L	R	I	Y	I	D	S	E	D	G	I	N	V	D	D	C	A	D	V	S	H	Q	V	S	A
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	D	V	E	D	P	I	T	V	A	Y	N	L	E	V	S	S	P	G	L	D	R	P	L	F	T	A	E	H	Y	A	R	F	V	G	E	E	V	T	L	V	L	R	M	A	V	Q	N	R	R	K	W	Q	G	V	I	K	A	V
Secondary structure
SS confidence
Disorder																																																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Sequence		D	G	E	M	I	T	V	T	V	E	G	K	D	E	V	F	A	L	S	N	I	Q	K	A	N	L	V	P	H	F
Secondary structure
SS confidence
Disorder																															?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ib8 chain A Region: 1 - 150 Aligned: 149 Modelled: 150 Confidence: 100.0% Identity: 32% PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene Phyre2 PDB 1ib8 chain A domain 2 Region: 1 - 82 Aligned: 81 Modelled: 82 Confidence: 99.9% Identity: 37% Fold: Alpha-lytic protease prodomain-like Superfamily: YhbC-like, N-terminal domain Family: YhbC-like, N-terminal domain Phyre2 PDB 1ib8 chain A domain 1 Region: 83 - 149 Aligned: 67 Modelled: 67 Confidence: 99.4% Identity: 28% Fold: Sm-like fold Superfamily: YhbC-like, C-terminal domain Family: YhbC-like, C-terminal domain Phyre2 PDB 1y96 chain C Region: 82 - 147 Aligned: 62 Modelled: 66 Confidence: 88.7% Identity: 11% PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex Phyre2 PDB 3cw1 chain 5 Region: 87 - 122 Aligned: 32 Modelled: 36 Confidence: 85.0% Identity: 22% PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp Phyre2 PDB 1h64 chain 1 Region: 82 - 122 Aligned: 34 Modelled: 41 Confidence: 83.9% Identity: 24% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1th7 chain A domain 1 Region: 78 - 122 Aligned: 38 Modelled: 45 Confidence: 83.0% Identity: 13% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1i8f chain A Region: 86 - 122 Aligned: 33 Modelled: 37 Confidence: 80.8% Identity: 18% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1m5q chain 1 Region: 89 - 122 Aligned: 30 Modelled: 34 Confidence: 79.4% Identity: 37% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1mgq chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 77.4% Identity: 25% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 3bw1 chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 77.1% Identity: 29% PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation Phyre2 PDB 1b34 chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 76.3% Identity: 32% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 1b34 chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 76.3% Identity: 32% PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain Phyre2 PDB 1jbm chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 76.2% Identity: 25% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 PDB 3swn chain T Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 75.8% Identity: 21% PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings Phyre2 PDB 3cw1 chain Z Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 74.9% Identity: 25% PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp Phyre2 PDB 1n9s chain H Region: 91 - 122 Aligned: 29 Modelled: 32 Confidence: 74.9% Identity: 21% PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212 Phyre2 PDB 3swn chain A Region: 91 - 122 Aligned: 28 Modelled: 32 Confidence: 74.8% Identity: 14% PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings Phyre2 PDB 2fwk chain B Region: 91 - 123 Aligned: 29 Modelled: 33 Confidence: 74.3% Identity: 17% PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 Phyre2 PDB 1ljo chain A Region: 91 - 122 Aligned: 29 Modelled: 32 Confidence: 74.2% Identity: 17% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Sm motif of small nuclear ribonucleoproteins, SNRNP Phyre2 1 c1ib8A_ 2 d1ib8a2 3 d1ib8a1 4 c1y96C_ 5 c3cw15_ 6 d1h641_ 7 d1th7a1 8 d1i8fa_ 9 d1m5q1_ 10 d1mgqa_ 11 c3bw1A_ 12 d1b34a_ 13 c1b34A_ 14 d1jbma_ 15 c3swnT_ 16 c3cw1Z_ 17 c1n9sH_ 18 c3swnA_ 19 c2fwkB_ 20 d1ljoa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ib8A_ 100.0 32 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 2 d1ib8a2 99.9 37 Fold:Alpha-lytic protease prodomain-like Superfamily:YhbC-like, N-terminal domain Family:YhbC-like, N-terminal domain 3 d1ib8a1 99.4 28 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 4 c1y96C_ 88.7 11 PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex 5 c3cw15_ 85.0 22 PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp 6 d1h641_ 83.9 24 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 7 d1th7a1 83.0 13 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 8 d1i8fa_ 80.8 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 9 d1m5q1_ 79.4 37 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 10 d1mgqa_ 77.4 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 11 c3bw1A_ 77.1 29 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation 12 d1b34a_ 76.3 32 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 13 c1b34A_ 76.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 14 d1jbma_ 76.2 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 15 c3swnT_ 75.8 21 PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 16 c3cw1Z_ 74.9 25 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 17 c1n9sH_ 74.9 21 PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212 18 c3swnA_ 74.8 14 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 19 c2fwkB_ 74.3 17 PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 20 d1ljoa_ 74.2 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 21 d1d3bl_ not modelled 74.1 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 22 c3swnC_ not modelled 73.7 20 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 23 d1n9ra_ not modelled 73.5 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 24 d1d3ba_ not modelled 72.6 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 25 d1n9sc_ not modelled 72.5 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 26 d1biaa2 not modelled 71.6 16 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 27 d1i4k1_ not modelled 71.3 20 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 28 c2ewnA_ not modelled 71.2 19 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 29 c2e70A_ not modelled 70.9 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 30 d1d3bb_ not modelled 69.5 28 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 31 c2kvqG_ not modelled 68.4 30 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 32 c2jvvA_ not modelled 68.4 30 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 33 d1ycya1 not modelled 67.8 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:PF1955-like 34 c3pgwQ_ not modelled 67.2 27 PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 35 d1nz9a_ not modelled 66.8 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 36 d2fwka1 not modelled 66.5 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 37 c3pgwB_ not modelled 64.3 26 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 38 c2ej9A_ not modelled 61.2 19 PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii 39 c3cw1A_ not modelled 58.8 27 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 40 c2rm4A_ not modelled 56.7 25 PDB header:protein binding Chain: A: PDB Molecule:cg6311-pb; PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3) 41 d1r5pa_ not modelled 52.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 42 c2cghB_ not modelled 52.5 18 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 43 c3cw1D_ not modelled 51.5 14 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 44 c2e6zA_ not modelled 47.4 30 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 45 d2pi2e1 not modelled 43.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 46 c2pqaB_ not modelled 42.0 26 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 47 d1qd1a1 not modelled 40.3 17 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 48 c2pt7G_ not modelled 39.2 17 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 49 c2eayB_ not modelled 38.3 18 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 50 d1nppa2 not modelled 36.4 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 51 d1kk8a1 not modelled 35.4 21 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 52 d1h9aa1 not modelled 34.7 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 53 c2vc8A_ not modelled 34.5 24 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3) 54 d1qkia1 not modelled 31.4 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 55 d1u2ma_ not modelled 31.3 13 Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like 56 c2hbpA_ not modelled 29.1 12 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 57 c1tt9B_ not modelled 28.3 17 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 58 d1b34b_ not modelled 26.9 35 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 59 c1b34B_ not modelled 26.9 35 PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 60 d1wina_ not modelled 25.4 15 Fold:EF-Ts domain-like Superfamily:Band 7/SPFH domain Family:Band 7/SPFH domain 61 d1sg5a1 not modelled 22.4 19 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like 62 c1gshA_ not modelled 22.3 16 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 63 c1h9aA_ not modelled 22.1 18 PDB header:oxidoreductase (choh(d) - nad(p)) Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase; PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp 64 d1ug7a_ not modelled 20.9 10 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 65 c3cw1W_ not modelled 20.5 21 PDB header:splicing Chain: W: PDB Molecule:small nuclear ribonucleoprotein e; PDBTitle: crystal structure of human spliceosomal u1 snrnp 66 c1qkiE_ not modelled 20.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+ 67 c3ic8D_ not modelled 20.0 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a 68 c2zy3A_ not modelled 18.2 13 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 69 d1t4za_ not modelled 17.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 70 d3bypa1 not modelled 17.2 11 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 71 d1kuta_ not modelled 17.1 25 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:SAICAR synthase 72 c2bhlB_ not modelled 16.8 15 PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate 73 c3dexA_ not modelled 16.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 74 c2iruA_ not modelled 16.0 8 PDB header:transferase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the polymerase domain from mycobacterium2 tuberculosis ligase d 75 d1h8la1 not modelled 15.2 20 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 76 c1qd1A_ not modelled 15.1 19 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 77 c1zq1B_ not modelled 15.0 19 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 78 c1bknA_ not modelled 14.9 28 PDB header:dna repair Chain: A: PDB Molecule:mutl; PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl 79 d2bu1a1 not modelled 14.8 26 Fold:RNA bacteriophage capsid protein Superfamily:RNA bacteriophage capsid protein Family:RNA bacteriophage capsid protein 80 d1uwya1 not modelled 14.8 36 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 81 c2gqsA_ not modelled 14.5 21 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide PDBTitle: saicar synthetase complexed with cair-mg2+ and adp 82 c3kreA_ not modelled 14.2 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase; PDBTitle: crystal structure of phosphoribosylaminoimidazole-succinocarboxamide2 synthase from ehrlichia chaffeensis at 1.8a resolution 83 c1m1gB_ not modelled 14.2 22 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 84 c2z02A_ not modelled 14.2 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide PDBTitle: crystal structure of2 phosphoribosylaminoimidazolesuccinocarboxamide synthase3 wit atp from methanocaldococcus jannaschii 85 c2ywvB_ not modelled 13.7 4 PDB header:ligase Chain: B: PDB Molecule:phosphoribosylaminoimidazole succinocarboxamide synthetase; PDBTitle: crystal structure of saicar synthetase from geobacillus kaustophilus 86 c2faoB_ not modelled 13.5 14 PDB header:hydrolase/transferase Chain: B: PDB Molecule:probable atp-dependent dna ligase; PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain 87 c3d0fA_ not modelled 13.4 9 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 88 c2h31A_ not modelled 13.3 18 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 89 c3nuaB_ not modelled 13.3 11 PDB header:ligase Chain: B: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase; PDBTitle: crystal structure of phosphoribosylaminoimidazole-succinocarboxamide2 synthase from clostridium perfringens 90 c2kz0A_ not modelled 13.1 9 PDB header:transcription Chain: A: PDB Molecule:bola family protein; PDBTitle: solution structure of a bola protein (ech_0303) from ehrlichia2 chaffeensis. seattle structural genomics center for infectious3 disease target ehcha.10365.a 91 c3qiiA_ not modelled 12.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 92 c3kbqA_ not modelled 12.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 93 c2p0gB_ not modelled 12.3 6 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 94 c2ojlB_ not modelled 12.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 95 c3bfmA_ not modelled 11.9 20 PDB header:unknown function Chain: A: PDB Molecule:biotin protein ligase-like protein of unknown function; PDBTitle: crystal structure of a biotin protein ligase-like protein of unknown2 function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 a3 resolution 96 c2ckkA_ not modelled 11.3 20 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 97 d3bpda1 not modelled 11.3 8 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 98 d1utya_ not modelled 10.9 39 Fold:BTV NS2-like ssRNA-binding domain Superfamily:BTV NS2-like ssRNA-binding domain Family:BTV NS2-like ssRNA-binding domain 99 c1utyA_ not modelled 10.9 39 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 2; PDBTitle: crystal structure of the rna binding domain of bluetongue2 virus non-structural protein 2(ns2)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0