Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	G	T	V	A	G	T	N	D	S	T	T	T	I	A	T	N	D	M	V	Q	E	H	V	T	N	F	T	K	E	L	F	G	Y	I	A	N	G	I	G	D	D	I	S	S	I	A	R	T	M	L	G	E	V	V	E	K	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?			?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	D	W	Q	I	E	R	F	Q	Q	S	I	Q	D	D	K	I	S	F	T	I	Q	T	D	H	S	E	K	Y	S	M	L	S	G	M	R	A	H	I	L	R	R	N	N	N	Y	Q	F	I	V	T	I	N	S	K	N	Y	G	C	S
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	N	T	D	I	N	W	C	S	I	V	Y	L	L	N	N	M	T	V	N	D	N	A	N	D	V	A	V	T	E	S	Y	K	P	I	W	N	W	K	I	S	Q	Y	N	V	S	D	I	K	F	E	T	M	I	K	P	Q	F	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	R	I	Y	F	S	N	C	L	P	V	D	P	T	S	T	R	P	T	Y	F	G	D	T	D	G	S	V	G	A	V	L	F	A	L	F	A	T	G	H	L	G	I	M	A	E	G	E	N	F	L	S	Q	L	L	N	I	E	D	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	L	N	V	L	L	R	E	N	F	N	E	Q	L	N	T	N	V	N	T	I	I	S	I	L	N	R	R	D	I	I	L	E	S	L	Q	P	Y	L	V	I	N	K	D	A	V	T	P	C	T	F	L	G	D	Q	T	G	D	R	F
Secondary structure
SS confidence
Disorder												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	N	I	C	G	D	Q	F	I	I	D	L	L	K	R	I	M	S	I	N	E	N	V	H	V	L	A	G	N	H	E	T	N	C	N	G	N	Y	M	Q	N	F	T	R	M	K	P	L	D	E	D	T	Y	S	G	I	K	D	Y	P
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	C	F	Y	D	P	K	Y	K	I	M	A	N	H	H	G	I	T	F	D	D	Q	R	K	R	Y	I	I	G	P	I	T	V	S	I	D	E	M	T	N	A	L	D	P	V	E	L	A	A	I	I	N	K	K	H	H	A	I	I	N
Secondary structure
SS confidence
Disorder																																							?	?	?	?																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		G	K	K	F	K	T	S	R	A	I	S	C	R	S	F	N	R	Y	F	S	V	S	T	D	Y	R	P	K	L	E	A	L	L	A	C	S	Q	M	L	G	I	N	Q	V	V	A	H	N	G	N	G	G	R	E	R	I	G	E	T	G
Secondary structure
SS confidence
Disorder										?																												?									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		T	V	L	G	L	N	A	R	D	S	K	H	A	G	R	M	F	S	M	H	N	C	Q	I	N	P	G	A	G	P	E	I	T	T	P	W	K	S	Y	Q	H	E	K	N	R	N	G	L	M	P	L	I	R	R	R	T	M	L	Q	L
Secondary structure
SS confidence
Disorder								?	?	?	?			?	?									?					?											?	?	?	?	?	?	?		?							?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c5w chain C domain 1 Region: 232 - 332 Aligned: 95 Modelled: 101 Confidence: 88.8% Identity: 19% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 1jk7 chain A Region: 232 - 332 Aligned: 95 Modelled: 101 Confidence: 87.4% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 1s70 chain A Region: 232 - 332 Aligned: 95 Modelled: 101 Confidence: 86.8% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2p6b chain A domain 1 Region: 233 - 332 Aligned: 94 Modelled: 100 Confidence: 86.0% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2jog chain A Region: 232 - 332 Aligned: 95 Modelled: 101 Confidence: 85.6% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex Phyre2 PDB 2p6b chain C Region: 233 - 332 Aligned: 94 Modelled: 100 Confidence: 85.3% Identity: 21% PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide Phyre2 PDB 1aui chain A Region: 233 - 332 Aligned: 94 Modelled: 100 Confidence: 84.3% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer Phyre2 PDB 1aui chain A Region: 233 - 332 Aligned: 94 Modelled: 100 Confidence: 84.3% Identity: 23% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 3nx2 chain B Region: 79 - 194 Aligned: 107 Modelled: 114 Confidence: 77.2% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:ferulic acid decarboxylase; PDBTitle: enterobacter sp. px6-4 ferulic acid decarboxylase in complex with2 substrate analogues Phyre2 PDB 3icf chain B Region: 232 - 331 Aligned: 95 Modelled: 100 Confidence: 75.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5 Phyre2 PDB 2qjc chain A Region: 290 - 380 Aligned: 81 Modelled: 91 Confidence: 68.8% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase Phyre2 PDB 3nad chain B Region: 79 - 194 Aligned: 107 Modelled: 115 Confidence: 68.5% Identity: 25% PDB header:lyase Chain: B: PDB Molecule:ferulate decarboxylase; PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670 Phyre2 PDB 1s95 chain A Region: 246 - 332 Aligned: 87 Modelled: 87 Confidence: 63.6% Identity: 24% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2zbm chain A Region: 290 - 331 Aligned: 42 Modelled: 42 Confidence: 58.8% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase Phyre2 PDB 2nxf chain A domain 1 Region: 281 - 367 Aligned: 87 Modelled: 87 Confidence: 51.6% Identity: 18% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: ADPRibase-Mn-like Phyre2 PDB 1wao chain 4 Region: 232 - 331 Aligned: 95 Modelled: 100 Confidence: 51.2% Identity: 20% PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure Phyre2 PDB 1ii7 chain A Region: 281 - 331 Aligned: 51 Modelled: 51 Confidence: 50.0% Identity: 20% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: DNA double-strand break repair nuclease Phyre2 PDB 2gc9 chain A domain 1 Region: 79 - 194 Aligned: 106 Modelled: 107 Confidence: 47.5% Identity: 21% Fold: Lipocalins Superfamily: Lipocalins Family: Phenolic acid decarboxylase (PAD) Phyre2 PDB 1uf3 chain A Region: 295 - 331 Aligned: 37 Modelled: 37 Confidence: 47.3% Identity: 5% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: TT1561-like Phyre2 PDB 2dfj chain A Region: 310 - 334 Aligned: 25 Modelled: 25 Confidence: 47.0% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a Phyre2 1 d3c5wc1 2 d1jk7a_ 3 d1s70a_ 4 d2p6ba1 5 c2jogA_ 6 c2p6bC_ 7 c1auiA_ 8 d1auia_ 9 c3nx2B_ 10 c3icfB_ 11 c2qjcA_ 12 c3nadB_ 13 d1s95a_ 14 c2zbmA_ 15 d2nxfa1 16 c1wao4_ 17 d1ii7a_ 18 d2gc9a1 19 d1uf3a_ 20 c2dfjA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3c5wc1 88.8 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 2 d1jk7a_ 87.4 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 3 d1s70a_ 86.8 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 4 d2p6ba1 86.0 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 5 c2jogA_ 85.6 21 PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex 6 c2p6bC_ 85.3 21 PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide 7 c1auiA_ 84.3 23 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer 8 d1auia_ 84.3 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 9 c3nx2B_ 77.2 15 PDB header:lyase Chain: B: PDB Molecule:ferulic acid decarboxylase; PDBTitle: enterobacter sp. px6-4 ferulic acid decarboxylase in complex with2 substrate analogues 10 c3icfB_ 75.8 16 PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5 11 c2qjcA_ 68.8 19 PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase 12 c3nadB_ 68.5 25 PDB header:lyase Chain: B: PDB Molecule:ferulate decarboxylase; PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670 13 d1s95a_ 63.6 24 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 14 c2zbmA_ 58.8 26 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase 15 d2nxfa1 51.6 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like 16 c1wao4_ 51.2 20 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 17 d1ii7a_ 50.0 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 18 d2gc9a1 47.5 21 Fold:Lipocalins Superfamily:Lipocalins Family:Phenolic acid decarboxylase (PAD) 19 d1uf3a_ 47.3 5 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 20 c2dfjA_ 47.0 28 PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a 21 c2eqxA_ not modelled 37.7 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein 4; PDBTitle: solution structure of the back domain of kelch repeat and2 btb domain-containing protein 4 22 c3av0A_ not modelled 34.2 26 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 23 c2wdfA_ not modelled 32.4 9 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb 24 c1oidA_ not modelled 32.0 14 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 25 d1xm7a_ not modelled 31.5 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666 26 c1s3mA_ not modelled 31.0 23 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 27 c3auzA_ not modelled 30.4 26 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 28 d2z1aa2 not modelled 27.0 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 29 d1s3la_ not modelled 23.2 28 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 30 c2c55A_ not modelled 20.5 33 PDB header:viral protein Chain: A: PDB Molecule:protein p6; PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein 31 c2xmoB_ not modelled 18.3 22 PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642 32 c2kknA_ not modelled 18.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of themotoga maritima protein tm1076:2 northeast structural genomics consortium target vt57 33 d1s04a_ not modelled 18.0 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 34 c3rl4A_ not modelled 17.8 23 PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant 35 c2la3A_ not modelled 16.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain 36 c2kkrA_ not modelled 16.4 18 PDB header:transcription, protein binding Chain: A: PDB Molecule:ataxin-7; PDBTitle: solution structure of sca7 zinc finger domain from human ataxin-72 protein 37 d1qfxa_ not modelled 15.1 6 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Histidine acid phosphatase 38 d1pv8a_ not modelled 15.0 48 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 39 c2aklA_ not modelled 13.8 47 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 40 d2akka1 not modelled 13.4 40 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 41 d1z2wa1 not modelled 13.3 10 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 42 c2i5hA_ not modelled 13.3 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 43 d2i5ha1 not modelled 13.3 27 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 44 d2akla1 not modelled 13.2 47 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 45 c2dn5A_ not modelled 13.2 31 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna 46 d1qcsa2 not modelled 11.8 32 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 47 d1g5ba_ not modelled 11.6 29 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 48 c1xrxD_ not modelled 11.5 48 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 49 d1xrxa1 not modelled 11.5 48 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 50 d1t6la1 not modelled 11.5 23 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 51 c1p0oA_ not modelled 11.1 63 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles 52 c3fmtF_ not modelled 11.0 55 PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna 53 c3alxB_ not modelled 11.0 28 PDB header:viral protein/membrane protein Chain: B: PDB Molecule:hemagglutinin, cdw150; PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (mv-h(l482r)-slam(n102h/r108y) fusion) 54 d1xnea_ not modelled 10.9 25 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 55 c3c9fB_ not modelled 10.4 23 PDB header:hydrolase Chain: B: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314 56 c3zu0A_ not modelled 10.4 18 PDB header:hydrolase Chain: A: PDB Molecule:nad nucleotidase; PDBTitle: structure of haemophilus influenzae nad nucleotidase (nadn) 57 d1q60a_ not modelled 10.4 38 Fold:GTF2I-like repeat Superfamily:GTF2I-like repeat Family:GTF2I-like repeat 58 c2ftcB_ not modelled 9.8 33 PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 59 d2p0sa1 not modelled 9.4 23 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:PG0945 N-terminal domain-like 60 d2a22a1 not modelled 9.3 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 61 c2gfiB_ not modelled 9.1 15 PDB header:hydrolase Chain: B: PDB Molecule:phytase; PDBTitle: crystal structure of the phytase from d. castellii at 2.3 a 62 c2dbhA_ not modelled 8.9 22 PDB header:signaling protein Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6 63 d2f9zc1 not modelled 8.7 50 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 64 c3letB_ not modelled 8.2 40 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops 65 c1z8yO_ not modelled 8.2 63 PDB header:virus Chain: O: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 66 c1z8yM_ not modelled 8.2 63 PDB header:virus Chain: M: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 67 c1z8yK_ not modelled 8.2 63 PDB header:virus Chain: K: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 68 c1z8yI_ not modelled 8.2 63 PDB header:virus Chain: I: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 69 d1p42a2 not modelled 8.0 31 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 70 c2hb0B_ not modelled 8.0 36 PDB header:cell adhesion Chain: B: PDB Molecule:cfa/i fimbrial subunit e; PDBTitle: crystal structure of cfae, the adhesive subunit of cfa/i2 fimbria of enterotoxigenic escherichia coli 71 c2vxdA_ not modelled 7.9 36 PDB header:nuclear protein Chain: A: PDB Molecule:nucleophosmin; PDBTitle: the structure of the c-terminal domain of nucleophosmin 72 d1su1a_ not modelled 7.7 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 73 c1su1A_ not modelled 7.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 74 d1xzwa2 not modelled 7.6 17 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like 75 d1c8ba_ not modelled 7.5 25 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease 76 c1t3tA_ not modelled 7.5 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 77 c3f83A_ not modelled 7.5 36 PDB header:cell adhesion Chain: A: PDB Molecule:fusion of the minor pilin cfae and major pilin cfab; PDBTitle: structure of fusion complex of the minor pilin cfae and major pilin2 cfab of cfa/i pili from etec e. coli 78 c3mmrA_ not modelled 7.4 9 PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh 79 c2vvxA_ not modelled 7.1 13 PDB header:viral protein Chain: A: PDB Molecule:protein a52; PDBTitle: structure of vaccinia virus protein a52 80 c2adlB_ not modelled 7.0 46 PDB header:dna binding protein Chain: B: PDB Molecule:ccda; PDBTitle: solution structure of the bacterial antitoxin ccda:2 implications for dna and toxin binding 81 c1yypA_ not modelled 6.8 23 PDB header:replication/transferase Chain: A: PDB Molecule:dna polymerase processivity factor; PDBTitle: crystal structure of cytomegalovirus ul44 bound to c-terminal peptide2 from cmv ul54 82 c3mcuF_ not modelled 6.7 23 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 83 d1cr5a2 not modelled 6.6 30 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 84 c2dzqA_ not modelled 6.5 31 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna 85 c2ed2A_ not modelled 6.3 23 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna 86 c1rz4A_ not modelled 6.3 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit 11; PDBTitle: crystal structure of human eif3k 87 d1bh9b_ not modelled 6.2 35 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 88 c2vesA_ not modelled 6.1 34 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor 89 c3ib7A_ not modelled 6.1 13 PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805 90 d1l4zb_ not modelled 6.1 78 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase 91 d2awia1 not modelled 5.9 44 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:PrgX N-terminal domain-like 92 c2l0eA_ not modelled 5.9 29 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger 93 c2dp3A_ not modelled 5.9 24 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 94 d2j6ba1 not modelled 5.9 14 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 95 c3lqkA_ not modelled 5.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 96 c2dn4A_ not modelled 5.7 27 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna 97 c3lybC_ not modelled 5.6 25 PDB header:hydrolase Chain: C: PDB Molecule:putative endoribonuclease; PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae 98 c1s1hN_ not modelled 5.6 20 PDB header:ribosome Chain: N: PDB Molecule:40s ribosomal protein s29-b; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 99 d1wjva1 not modelled 5.5 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0