PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yypA_

Fold library id	PDB Header	Molecule	Title
c1yypA_	PDB header: replication/transferase	Chain: A: PDB Molecule: dna polymerase processivity factor;	PDBTitle: crystal structure of cytomegalovirus ul44 bound to c-2 terminal peptide from cmv ul54

Links to external resources
Added to library: Tue Mar 16 12:06:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E P P T L A L R L K P Y K T A I Q Q L R S V I R A L K E N T T V T F L P T P S L I L Q T V R S H C V S K I T F N S S C L Y I T D K S F Q P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T T T T
G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T I N N S T P L L G N F M Y L T S S K D L T K F Y V Q D I S D L S A K I S M C A P D F N M E F S S A C V H G Q D I V R E S E N S A V H V D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T T
T T
S S T T
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D F G V V A D L L K W I G P T G T V Q I L V H A G P P A I K F I L T N G S E L E F T S N N R V S F H G V K N M R I N V Q L K N F Y Q T L L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T S
S B T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . .

Sequence C A V T K L P C T L R I V T E H D T L L Y V A S R N G L F A V E N F L T E E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	P	P	T	L	A	L	R	L	K	P	Y	K	T	A	I	Q	Q	L	R	S	V	I	R	A	L	K	E	N	T	T	V	T	F	L	P	T	P	S	L	I	L	Q	T	V	R	S	H	C	V	S	K	I	T	F	N	S	S	C	L	Y	I	T	D	K	S	F	Q	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T						T			S	S							T	T	T									T	T									G	G	G				S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	I	N	N	S	T	P	L	L	G	N	F	M	Y	L	T	S	S	K	D	L	T	K	F	Y	V	Q	D	I	S	D	L	S	A	K	I	S	M	C	A	P	D	F	N	M	E	F	S	S	A	C	V	H	G	Q	D	I	V	R	E	S	E	N	S	A	V	H	V	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S			T	T	T							T	T		T	T											S	S									T	T												S								S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	F	G	V	V	A	D	L	L	K	W	I	G	P	T	G	T	V	Q	I	L	V	H	A	G	P	P	A	I	K	F	I	L	T	N	G	S	E	L	E	F	T	S	N	N	R	V	S	F	H	G	V	K	N	M	R	I	N	V	Q	L	K	N	F	Y	Q	T	L	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T	T	T							T	T	S							S	B	T	T								S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Sequence	C	A	V	T	K	L	P	C	T	L	R	I	V	T	E	H	D	T	L	L	Y	V	A	S	R	N	G	L	F	A	V	E	N	F	L	T	E	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		S									S	S	S										S	S