Phyre 2 alignment of P37627 with c2c55A_

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Job Description | P37627
Confidence | 20.52% | Date | Wed Jan 25 15:20:52 GMT 2012
Rank | 30 | Aligned Residues | 30
% Identity | 33% | Template | c2c55A_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:protein p6; | PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 507 | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | A | G | P | E | I | T | T | P | W | K | S | Y | Q | H | E | K | N | R | N | G | L | M | P | L | I | R | R | R | T | M | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | F | G | E | E | T | T | T | P | . | S | Q | K | Q | E | P | I | D | K | . | E | L | Y | P | L | A | S | L | R | S | L | F
Template Known Secondary structure |  | T | T | G | G | G | S | S |  | S | . |  | S | S | S |  |  |  | S | S | . | S | S | S | T | T | G | G | G | G | T | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 16 | . | . | . | 20 | . | . | . | . |  | . | . | . | . | . | 30 | . | . | . |  | . | . | . | . | . | . | 40 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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