Email l.a.kelley@imperial.ac.uk Description P76085 Date Thu Jan 5 12:18:37 GMT 2012 Unique Job ID 73b621d8230540d1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2y4oA_ 100.0 67 PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate 2 c2y27B_ 100.0 63 PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia 3 c3qovD_ 100.0 41 PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution 4 d1pg4a_ 100.0 20 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 5 c2vsqA_ 100.0 19 PDB header:ligase Chain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module 6 d1ry2a_ 100.0 19 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 7 c3hguB_ 100.0 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:ehpf; PDBTitle: structure of phenazine antibiotic biosynthesis protein 8 c3tsyA_ 100.0 17 PDB header:ligase, transferase Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein 9 d3cw9a1 100.0 18 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 10 c3e7wA_ 100.0 12 PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains 11 c3gqwB_ 100.0 18 PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound 12 d1mdba_ 100.0 16 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 13 c3etcB_ 100.0 16 PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 14 c3ni2A_ 100.0 17 PDB header:ligase Chain: A: PDB Molecule:4-coumarate:coa ligase; PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase 15 c3kxwA_ 100.0 13 PDB header:ligase Chain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila 16 c3iteB_ 100.0 15 PDB header:ligase Chain: B: PDB Molecule:sidn siderophore synthetase; PDBTitle: the third adenylation domain of the fungal sidn non-2 ribosomal peptide synthetase 17 c3eynB_ 100.0 15 PDB header:ligase Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a; PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa 18 c3nyrA_ 100.0 13 PDB header:ligase Chain: A: PDB Molecule:malonyl-coa ligase; PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound 19 c2d1tA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:luciferin 4-monooxygenase; PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue 20 c2v7bB_ 100.0 20 PDB header:ligase Chain: B: PDB Molecule:benzoate-coenzyme a ligase; PDBTitle: crystal structures of a benzoate coa ligase from2 burkholderia xenovorans lb400 21 c3iplB_ not modelled 100.0 19 PDB header:ligase Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase; PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50 22 d1v25a_ not modelled 100.0 18 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 23 c3g7sA_ not modelled 100.0 19 PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus 24 c3dhvA_ not modelled 100.0 16 PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate 25 d1lcia_ not modelled 100.0 13 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 26 c1amuB_ not modelled 100.0 15 PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine 27 d1amua_ not modelled 100.0 16 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 28 c3l8cA_ not modelled 100.0 17 PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase2 subunit-1 from streptococcus pyogenes 29 c3o82B_ not modelled 99.9 18 PDB header:ligase Chain: B: PDB Molecule:peptide arylation enzyme; PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine 30 c3ivrA_ not modelled 99.9 13 PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 31 c3e53A_ not modelled 99.9 14 PDB header:ligase Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28; PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis 32 c3o82A_ not modelled 99.8 18 PDB header:ligase Chain: A: PDB Molecule:peptide arylation enzyme; PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine 33 c3laxA_ not modelled 99.6 28 PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: the crystal structure of a domain of phenylacetate-coenzyme2 a ligase from bacteroides vulgatus atcc 8482 34 c2wh7A_ not modelled 34.7 44 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 35 d1whua_ not modelled 34.0 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 36 c2i2xD_ not modelled 29.9 11 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 37 d3bula2 not modelled 29.2 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 38 d1hska2 not modelled 29.1 18 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 39 d1pk1c1 not modelled 27.0 21 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 40 d1wwva1 not modelled 23.6 15 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 41 c2c3fA_ not modelled 19.1 44 PDB header:lyase Chain: A: PDB Molecule:hyaluronidase, phage associated; PDBTitle: the structure of a group a streptococcal phage-encoded2 tail-fibre showing hyaluronan lyase activity. 42 d2c3fa1 not modelled 19.1 44 Fold:Triple-stranded beta-helix Superfamily:Phage fibre proteins Family:HylP-like 43 c1bmtB_ not modelled 16.1 13 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 44 d1dpta_ not modelled 15.1 6 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 45 c1pk1A_ not modelled 14.5 28 PDB header:transcription repression Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein; PDBTitle: hetero sam domain structure of ph and scm. 46 c2ormA_ not modelled 14.4 11 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 47 d2o70a1 not modelled 13.8 13 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 48 c3ry0A_ not modelled 13.7 14 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 49 d1bjpa_ not modelled 13.3 10 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 50 c3ezxA_ not modelled 12.5 12 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 51 d1otfa_ not modelled 12.5 16 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 52 c3kk1B_ not modelled 11.6 12 PDB header:transferase/dna Chain: B: PDB Molecule:reverse transcriptase p51 subunit; PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site 53 c3ebrA_ not modelled 11.5 19 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 54 c1hskA_ not modelled 11.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: crystal structure of s. aureus murb 55 c3abfB_ not modelled 11.1 18 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 56 c2op8A_ not modelled 11.0 22 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 57 c2x4kB_ not modelled 10.5 16 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 58 d1kw4a_ not modelled 10.2 22 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 59 d1iwga3 not modelled 10.0 8 Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 60 d1h80a_ not modelled 10.0 31 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:iota-carrageenase 61 d2zd1b1 not modelled 9.3 12 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 62 c1rthA_ not modelled 8.6 12 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:hiv-1 reverse transcriptase; PDBTitle: high resolution structures of hiv-1 rt from four rt-2 inhibitor complexes 63 d1ucra_ not modelled 8.3 57 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Dissimilatory sulfite reductase DsvD 64 d2qfia1 not modelled 8.3 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 65 c1y80A_ not modelled 8.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 66 c1x4rA_ not modelled 7.9 71 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 67 c3mb2G_ not modelled 7.7 12 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 68 c2pmzV_ not modelled 7.6 22 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 69 d2icwg1 not modelled 7.5 31 Fold:Superantigen MAM Superfamily:Superantigen MAM Family:Superantigen MAM 70 c2do9A_ not modelled 6.6 27 PDB header:signaling protein Chain: A: PDB Molecule:nacht-, lrr- and pyd-containing protein 10; PDBTitle: solution structure of the pyrin/paad-dapin domain in mouse2 nalp10 (nacht, leucine rich repeat and pyd containing 10) 71 c2pjkA_ not modelled 6.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 72 c2bcmB_ not modelled 6.2 43 PDB header:cell adhesion Chain: B: PDB Molecule:f1845 fimbrial protein; PDBTitle: daae adhesin 73 c2epbA_ not modelled 6.2 63 PDB header:transcription Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 6; PDBTitle: solution structure of chromo domain 2 in chromodomain-2 helicase-dna-binding protein 6 74 d1uhra_ not modelled 6.2 36 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 75 c2qfiB_ not modelled 6.2 14 PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip 76 c3idwA_ not modelled 6.1 18 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 77 d2edua1 not modelled 6.1 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 78 d1mwwa_ not modelled 6.0 11 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 79 c2zztA_ not modelled 6.0 8 PDB header:transport protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein 80 c1pk1B_ not modelled 6.0 15 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 81 d2f3na1 not modelled 6.0 12 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 82 c1k98A_ not modelled 5.9 13 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 83 d1gyxa_ not modelled 5.9 6 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 84 c2fvnA_ not modelled 5.8 36 PDB header:cell adhesion Chain: A: PDB Molecule:protein afad; PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins 85 c3bs7A_ not modelled 5.6 15 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 86 d2aala1 not modelled 5.6 26 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 87 c3bs5A_ not modelled 5.6 15 PDB header:signaling protein/membrane protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of hcnk2-sam/dhyp-sam complex 88 c2dn5A_ not modelled 5.4 45 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna 89 c3cmqA_ not modelled 5.1 10 PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial; PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase 90 d1f06a2 not modelled 5.1 9 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 91 d7reqa2 not modelled 5.0 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain