Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	L	Q	V	L	H	I	P	D	E	R	L	R	K	V	A	K	P	V	E	E	V	N	A	E	I	Q	R	I	V	D	D	M	F	E	T	M	Y	A	E	E	G	I	G	L	A	A	T	Q	V	D	I	H	Q	R	I	I	V
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	D	V	S	E	N	R	D	E	R	L	V	L	I	N	P	E	L	L	E	K	S	G	E	T	G	I	E	E	G	C	L	S	I	P	E	Q	R	A	L	V	P	R	A	E	K	V	K	I	R	A	L	D	R	D	G	K	P	F	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Sequence		L	E	A	D	G	L	L	A	I	C	I	Q	H	E	M	D	H	L	V	G	K	L	F	M	D	Y	L	S	P	L	K	Q	Q	R	I	R	Q	K	V	E	K	L	D	R	L	K	A	R	A
Secondary structure
SS confidence
Disorder																																															?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2w3t chain A Region: 2 - 168 Aligned: 167 Modelled: 167 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: chloro complex of the ni-form of e.coli deformylase Phyre2 PDB 1ix1 chain A Region: 2 - 168 Aligned: 167 Modelled: 167 Confidence: 100.0% Identity: 56% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1xeo chain A domain 1 Region: 2 - 165 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 100% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 3qu1 chain B Region: 2 - 168 Aligned: 166 Modelled: 167 Confidence: 100.0% Identity: 51% PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:peptide deformylase 2; PDBTitle: peptide deformylase from vibrio cholerae Phyre2 PDB 3oca chain B Region: 2 - 165 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis Phyre2 PDB 2ew7 chain A Region: 2 - 159 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of helicobacter pylori peptide deformylase Phyre2 PDB 3cpm chain A Region: 4 - 166 Aligned: 163 Modelled: 163 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase, chloroplast; PDBTitle: plant peptide deformylase pdf1b crystal structure Phyre2 PDB 1y6h chain A Region: 2 - 166 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 35% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1jym chain A Region: 4 - 166 Aligned: 161 Modelled: 163 Confidence: 100.0% Identity: 33% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1ws1 chain A Region: 1 - 152 Aligned: 151 Modelled: 152 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase 1; PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus Phyre2 PDB 3e3u chain A Region: 2 - 164 Aligned: 163 Modelled: 163 Confidence: 100.0% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor Phyre2 PDB 1rl4 chain A Region: 5 - 164 Aligned: 152 Modelled: 160 Confidence: 100.0% Identity: 37% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 3g5p chain B Region: 1 - 151 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: structure and activity of human mitochondrial peptide deformylase, a2 novel cancer target Phyre2 PDB 2def chain A Region: 3 - 148 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 100% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1lme chain A Region: 1 - 149 Aligned: 146 Modelled: 149 Confidence: 100.0% Identity: 39% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 1v3y chain A Region: 1 - 168 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 33% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 3dld chain A Region: 3 - 159 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase, xoo1075, from2 xanthomonas oryzae pv. oryzae kacc10331 Phyre2 PDB 1lqy chain A Region: 1 - 164 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 30% Fold: Peptide deformylase Superfamily: Peptide deformylase Family: Peptide deformylase Phyre2 PDB 3g6n chain A Region: 1 - 163 Aligned: 161 Modelled: 163 Confidence: 100.0% Identity: 30% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of an efpdf complex with met-ala-ser Phyre2 PDB 1zy1 chain B Region: 3 - 152 Aligned: 150 Modelled: 150 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser Phyre2 1 c2w3tA_ 2 d1ix1a_ 3 d1xeoa1 4 c3qu1B_ 5 c3ocaB_ 6 c2ew7A_ 7 c3cpmA_ 8 d1y6ha_ 9 d1jyma_ 10 c1ws1A_ 11 c3e3uA_ 12 d1rl4a_ 13 c3g5pB_ 14 d2defa_ 15 d1lmea_ 16 d1v3ya_ 17 c3dldA_ 18 d1lqya_ 19 c3g6nA_ 20 c1zy1B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2w3tA_ 100.0 100 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: chloro complex of the ni-form of e.coli deformylase 2 d1ix1a_ 100.0 56 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 3 d1xeoa1 100.0 100 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 4 c3qu1B_ 100.0 51 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:peptide deformylase 2; PDBTitle: peptide deformylase from vibrio cholerae 5 c3ocaB_ 100.0 42 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis 6 c2ew7A_ 100.0 42 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of helicobacter pylori peptide deformylase 7 c3cpmA_ 100.0 36 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase, chloroplast; PDBTitle: plant peptide deformylase pdf1b crystal structure 8 d1y6ha_ 100.0 35 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 9 d1jyma_ 100.0 33 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 10 c1ws1A_ 100.0 42 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase 1; PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus 11 c3e3uA_ 100.0 33 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of mycobacterium tuberculosis peptide2 deformylase in complex with inhibitor 12 d1rl4a_ 100.0 37 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 13 c3g5pB_ 100.0 36 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: structure and activity of human mitochondrial peptide deformylase, a2 novel cancer target 14 d2defa_ 100.0 100 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 15 d1lmea_ 100.0 39 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 16 d1v3ya_ 100.0 33 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 17 c3dldA_ 100.0 36 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase, xoo1075, from2 xanthomonas oryzae pv. oryzae kacc10331 18 d1lqya_ 100.0 30 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 19 c3g6nA_ 100.0 30 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of an efpdf complex with met-ala-ser 20 c1zy1B_ 100.0 37 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser 21 d1lm4a_ not modelled 100.0 29 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 22 d1lm6a_ not modelled 100.0 28 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 23 c3l87A_ not modelled 100.0 28 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159 24 d1wmha_ not modelled 38.5 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 25 c2kvzA_ not modelled 37.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ispe; PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium 26 d1pqsa_ not modelled 34.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 27 d1q1oa_ not modelled 31.8 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 28 d1quaa_ not modelled 30.7 38 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 29 d1ip9a_ not modelled 26.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 30 d1nd1a_ not modelled 25.9 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 31 d1wnia_ not modelled 25.8 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 32 d2bkfa1 not modelled 25.2 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 33 c1yp1A_ not modelled 25.1 40 PDB header:hydrolase Chain: A: PDB Molecule:fii; PDBTitle: crystal structure of a non-hemorrhagic fibrin(ogen)olytic2 metalloproteinase from venom of agkistrodon acutus 34 d1bswa_ not modelled 25.0 50 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 35 d1r55a_ not modelled 24.1 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 36 d4aiga_ not modelled 23.7 40 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 37 c3c37B_ not modelled 21.6 24 PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m48 family; PDBTitle: x-ray structure of the putative zn-dependent peptidase q74d82 at the2 resolution 1.7 a. northeast structural genomics consortium target3 gsr143a 38 d1atla_ not modelled 21.4 31 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 39 c3k7nA_ not modelled 21.2 47 PDB header:hydrolase Chain: A: PDB Molecule:k-like; PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins 40 c2kt7A_ not modelled 20.5 28 PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a 41 d1kufa_ not modelled 20.5 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 42 c3k7lA_ not modelled 19.5 47 PDB header:hydrolase Chain: A: PDB Molecule:atragin; PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins 43 c2dw1B_ not modelled 14.3 40 PDB header:apoptosis, toxin Chain: B: PDB Molecule:catrocollastatin; PDBTitle: crystal structure of vap2 from crotalus atrox venom (form 2-2 crystal) 44 c3bmbB_ not modelled 14.2 15 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 45 c2erpA_ not modelled 13.8 53 PDB header:toxin Chain: A: PDB Molecule:vascular apoptosis-inducing protein 1; PDBTitle: crystal structure of vascular apoptosis-inducing protein-1(inhibitor-2 bound form) 46 d1c7ka_ not modelled 12.9 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Zinc protease 47 c2e3xA_ not modelled 12.7 33 PDB header:hydrolase, blood clotting, toxin Chain: A: PDB Molecule:coagulation factor x-activating enzyme heavy chain; PDBTitle: crystal structure of russell's viper venom metalloproteinase 48 c3b8zB_ not modelled 12.7 46 PDB header:hydrolase Chain: B: PDB Molecule:protein adamts-5; PDBTitle: high resolution crystal structure of the catalytic domain2 of adamts-5 (aggrecanase-2) 49 c1z5sD_ not modelled 12.6 33 PDB header:ligase Chain: D: PDB Molecule:ran-binding protein 2; PDBTitle: crystal structure of a complex between ubc9, sumo-1,2 rangap1 and nup358/ranbp2 50 d1ydla1 not modelled 12.4 24 Fold:TFB5-like Superfamily:TFB5-like Family:TFB5-like 51 d1wj6a_ not modelled 12.1 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 52 d1ytqa1 not modelled 12.0 24 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Crystallins/Ca-binding development proteins 53 d1cxva_ not modelled 11.9 43 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 54 d1a8ya3 not modelled 11.3 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 55 c2jz7A_ not modelled 11.1 22 PDB header:selenium-binding protein Chain: A: PDB Molecule:selenium binding protein; PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii 56 c2rjpC_ not modelled 10.5 23 PDB header:hydrolase Chain: C: PDB Molecule:adamts-4; PDBTitle: crystal structure of adamts4 with inhibitor bound 57 c3g5cA_ not modelled 10.0 25 PDB header:membrane protein Chain: A: PDB Molecule:adam 22; PDBTitle: structural and biochemical studies on the ectodomain of human adam22 58 d1xuca1 not modelled 9.6 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 59 d1v8ca2 not modelled 9.3 54 Fold:TBP-like Superfamily:MoaD-related protein, C-terminal domain Family:MoaD-related protein, C-terminal domain 60 d1qiba_ not modelled 9.0 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 61 c1zv8B_ not modelled 9.0 56 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 62 d1hv5a_ not modelled 9.0 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 63 d1i76a_ not modelled 8.9 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 64 d1rr8c1 not modelled 8.7 17 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 65 d1hova_ not modelled 8.5 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 66 d1hy7a_ not modelled 8.4 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 67 c2i47A_ not modelled 8.2 27 PDB header:hydrolase Chain: A: PDB Molecule:adam 17; PDBTitle: crystal structure of catalytic domain of tace with inhibitor 68 c2xs4A_ not modelled 8.1 45 PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium 69 c2h7fX_ not modelled 8.0 17 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 70 c3nppA_ not modelled 7.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pfam duf1093 family protein; PDBTitle: crystal structure of a pfam duf1093 family protein (bsu39620) from2 bacillus subtilis at 2.15 a resolution 71 d2k5wa1 not modelled 7.9 22 Fold:OB-fold Superfamily:BC4932-like Family:BC4932-like 72 d1cb8a2 not modelled 7.6 17 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 73 c2wd6B_ not modelled 7.4 29 PDB header:cell adhesion Chain: B: PDB Molecule:agglutinin receptor; PDBTitle: crystal structure of the variable domain of the2 streptococcus gordonii surface protein sspb 74 d1fbla2 not modelled 7.4 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 75 d1rm8a_ not modelled 7.3 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 76 c2ktrA_ not modelled 7.2 13 PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs 77 d2i47a1 not modelled 7.1 27 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TNF-alpha converting enzyme, TACE, catalytic domain 78 d1y6kr2 not modelled 6.9 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 79 d1k4ta2 not modelled 6.8 17 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 80 d2fkia1 not modelled 6.7 25 Fold:Secretion chaperone-like Superfamily:YjbR-like Family:YjbR-like 81 c2x7mA_ not modelled 6.4 29 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution 82 d1jmma_ not modelled 6.3 38 Fold:Supersandwich Superfamily:V-region of surface antigen I/II (SA I/II, PAC) Family:V-region of surface antigen I/II (SA I/II, PAC) 83 c3uinD_ not modelled 6.1 33 PDB header:ligase/isomerase/protein binding Chain: D: PDB Molecule:e3 sumo-protein ligase ranbp2; PDBTitle: complex between human rangap1-sumo2, ubc9 and the ir1 domain from2 ranbp2 84 d2axoa1 not modelled 5.8 57 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 85 d2k5qa1 not modelled 5.8 44 Fold:OB-fold Superfamily:BC4932-like Family:BC4932-like 86 d1bqqm_ not modelled 5.7 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 87 d1y93a1 not modelled 5.6 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 88 c2axoA_ not modelled 5.5 57 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein atu2684; PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35. 89 c1ytqA_ not modelled 5.5 24 PDB header:structural protein Chain: A: PDB Molecule:beta crystallin b2; PDBTitle: structure of native human beta b2 crystallin 90 d2ovxa1 not modelled 5.4 27 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 91 d1mmqa_ not modelled 5.4 36 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0