PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3l87A_

Fold library id	PDB Header	Molecule	Title
c3l87A_	PDB header: hydrolase	Chain: A: PDB Molecule: peptide deformylase;	PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159

Links to external resources
Added to library: Sat Jan 8 10:59:30 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S A I K T I T K A S H L I D M N D I I R E G H P T L R A V A Q D V T F P L N E D D I I L G E K M L Q F L K N S Q D P V T A E K M E L R G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T
T T S S
T T
G G G T S
B
S S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V G L A A P Q L D I S K R I I A V L I P N P E D P P K E A Y A L K E V M Y N P R I I A H S V Q D A A L A D G E G L S V D R V V E G Y V I R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G G T
B S
S S S
S S T T
S
S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . .

Sequence S R V T I E Y Y D K N S D K K K L K L K G Y Q S I V V Q H E I D H T N G I M F F D R I N E K N P F E I K E G L L L I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T
G G G G B
S S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	A	I	K	T	I	T	K	A	S	H	L	I	D	M	N	D	I	I	R	E	G	H	P	T	L	R	A	V	A	Q	D	V	T	F	P	L	N	E	D	D	I	I	L	G	E	K	M	L	Q	F	L	K	N	S	Q	D	P	V	T	A	E	K	M	E	L	R	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	T	T					T	T	S	S			T	T		G	G	G	T	S			B				S	S																					S								T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	G	L	A	A	P	Q	L	D	I	S	K	R	I	I	A	V	L	I	P	N	P	E	D	P	P	K	E	A	Y	A	L	K	E	V	M	Y	N	P	R	I	I	A	H	S	V	Q	D	A	A	L	A	D	G	E	G	L	S	V	D	R	V	V	E	G	Y	V	I	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				G	G	G	G	T			B	S														S	S	S																	S	S					T	T								S				S		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence	S	R	V	T	I	E	Y	Y	D	K	N	S	D	K	K	K	L	K	L	K	G	Y	Q	S	I	V	V	Q	H	E	I	D	H	T	N	G	I	M	F	F	D	R	I	N	E	K	N	P	F	E	I	K	E	G	L	L	L	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									T	T																								T	T			G	G	G	G	B		S	S		T	T				T	T