Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	V	Q	L	S	R	H	S	I	A	F	P	S	P	E	G	A	L	R	E	P	N	G	L	L	A	L	G	G	D	L	S	P	A	R	L	L	M	A	Y	Q	R	G	I	F	P	W	F	S	P	G	D	P	I	L	W	W	S
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	D	P	R	A	V	L	W	P	E	S	L	H	I	S	R	S	M	K	R	F	H	K	R	S	P	Y	R	V	T	M	N	Y	A	F	G	Q	V	I	E	G	C	A	S	D	R	E	E	G	T	W	I	T	R	G	V	V	E	A	Y
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	R	L	H	E	L	G	H	A	H	S	I	E	V	W	R	E	D	E	L	V	G	G	M	Y	G	V	A	Q	G	T	L	F	C	G	E	S	M	F	S	R	M	E	N	A	S	K	T	A	L	L	V	F	C	E	E	F	I	G	H
Secondary structure
SS confidence
Disorder																																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence		G	G	K	L	I	D	C	Q	V	L	N	D	H	T	A	S	L	G	A	C	E	I	P	R	R	D	Y	L	N	Y	L	N	Q	M	R	L	G	R	L	P	N	N	F	W	V	P	R	C	L	F	S	P	Q	E
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?			?				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2cxa chain A domain 1 Region: 1 - 232 Aligned: 229 Modelled: 231 Confidence: 100.0% Identity: 96% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: LFTR-like Phyre2 PDB 2cxa chain A Region: 1 - 232 Aligned: 229 Modelled: 231 Confidence: 100.0% Identity: 96% PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli Phyre2 PDB 1ne9 chain A domain 2 Region: 75 - 203 Aligned: 129 Modelled: 129 Confidence: 97.1% Identity: 12% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: FemXAB nonribosomal peptidyltransferases Phyre2 PDB 1p4n chain A Region: 58 - 203 Aligned: 145 Modelled: 146 Confidence: 96.1% Identity: 14% PDB header:ligase Chain: A: PDB Molecule:femx; PDBTitle: crystal structure of weissella viridescens femx:udp-murnac-2 pentapeptide complex Phyre2 PDB 1lrz chain A domain 3 Region: 73 - 203 Aligned: 124 Modelled: 131 Confidence: 92.4% Identity: 9% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: FemXAB nonribosomal peptidyltransferases Phyre2 PDB 1lrz chain A Region: 137 - 203 Aligned: 67 Modelled: 67 Confidence: 51.0% Identity: 12% PDB header:antibiotic inhibitor Chain: A: PDB Molecule:factor essential for expression of methicillin PDBTitle: x-ray crystal structure of staphylococcus aureus fema Phyre2 PDB 3thd chain D Region: 83 - 215 Aligned: 102 Modelled: 110 Confidence: 49.4% Identity: 23% PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin Phyre2 PDB 3iwg chain B Region: 86 - 197 Aligned: 106 Modelled: 110 Confidence: 46.8% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:acetyltransferase, gnat family; PDBTitle: acetyltransferase from gnat family from colwellia psychrerythraea. Phyre2 PDB 2ozh chain A Region: 86 - 204 Aligned: 114 Modelled: 119 Confidence: 45.1% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:hypothetical protein xcc2953; PDBTitle: crystal structure of a putative acetyltransferase belonging to the2 gnat family (xcc2953) from xanthomonas campestris pv. campestris at3 1.40 a resolution Phyre2 PDB 3s6f chain A Region: 111 - 187 Aligned: 77 Modelled: 77 Confidence: 41.6% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:hypothetical acetyltransferase; PDBTitle: crystal structure of a hypotetical acetyltransferase (dr_1678) from2 deinococcus radiodurans at 1.19 a resolution Phyre2 PDB 2kxe chain A Region: 164 - 199 Aligned: 36 Modelled: 36 Confidence: 33.5% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii small subunit; PDBTitle: n-terminal domain of the dp1 subunit of an archaeal d-family dna2 polymerase Phyre2 PDB 1qf6 chain A Region: 28 - 92 Aligned: 55 Modelled: 57 Confidence: 31.5% Identity: 24% PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna Phyre2 PDB 1yvk chain A domain 1 Region: 113 - 196 Aligned: 79 Modelled: 84 Confidence: 28.5% Identity: 18% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 1cm0 chain A Region: 114 - 185 Aligned: 72 Modelled: 72 Confidence: 22.0% Identity: 14% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 1y7r chain A domain 1 Region: 88 - 191 Aligned: 98 Modelled: 104 Confidence: 17.6% Identity: 10% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 1s7k chain A domain 1 Region: 113 - 197 Aligned: 78 Modelled: 85 Confidence: 17.3% Identity: 21% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 PDB 2hq2 chain A domain 1 Region: 127 - 146 Aligned: 20 Modelled: 20 Confidence: 17.1% Identity: 25% Fold: Heme iron utilization protein-like Superfamily: Heme iron utilization protein-like Family: HemS/ChuS-like Phyre2 PDB 2oix chain A Region: 111 - 123 Aligned: 13 Modelled: 13 Confidence: 16.3% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:xanthomonas outer protein d; PDBTitle: xanthomonas xopd c470a mutant Phyre2 PDB 1nyq chain A Region: 28 - 92 Aligned: 55 Modelled: 57 Confidence: 16.3% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate Phyre2 PDB 2bei chain A domain 1 Region: 93 - 206 Aligned: 114 Modelled: 114 Confidence: 16.1% Identity: 15% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 1 d2cxaa1 2 c2cxaA_ 3 d1ne9a2 4 c1p4nA_ 5 d1lrza3 6 c1lrzA_ 7 c3thdD_ 8 c3iwgB_ 9 c2ozhA_ 10 c3s6fA_ 11 c2kxeA_ 12 c1qf6A_ 13 d1yvka1 14 d1cm0a_ 15 d1y7ra1 16 d1s7ka1 17 d2hq2a1 18 c2oixA_ 19 c1nyqA_ 20 d2beia1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2cxaa1 100.0 96 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 2 c2cxaA_ 100.0 96 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 3 d1ne9a2 97.1 12 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 4 c1p4nA_ 96.1 14 PDB header:ligase Chain: A: PDB Molecule:femx; PDBTitle: crystal structure of weissella viridescens femx:udp-murnac-2 pentapeptide complex 5 d1lrza3 92.4 9 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 6 c1lrzA_ 51.0 12 PDB header:antibiotic inhibitor Chain: A: PDB Molecule:factor essential for expression of methicillin PDBTitle: x-ray crystal structure of staphylococcus aureus fema 7 c3thdD_ 49.4 23 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 8 c3iwgB_ 46.8 13 PDB header:transferase Chain: B: PDB Molecule:acetyltransferase, gnat family; PDBTitle: acetyltransferase from gnat family from colwellia psychrerythraea. 9 c2ozhA_ 45.1 13 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein xcc2953; PDBTitle: crystal structure of a putative acetyltransferase belonging to the2 gnat family (xcc2953) from xanthomonas campestris pv. campestris at3 1.40 a resolution 10 c3s6fA_ 41.6 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical acetyltransferase; PDBTitle: crystal structure of a hypotetical acetyltransferase (dr_1678) from2 deinococcus radiodurans at 1.19 a resolution 11 c2kxeA_ 33.5 25 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii small subunit; PDBTitle: n-terminal domain of the dp1 subunit of an archaeal d-family dna2 polymerase 12 c1qf6A_ 31.5 24 PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna 13 d1yvka1 28.5 18 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 14 d1cm0a_ 22.0 14 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 15 d1y7ra1 17.6 10 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 16 d1s7ka1 17.3 21 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 17 d2hq2a1 17.1 25 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 18 c2oixA_ 16.3 31 PDB header:hydrolase Chain: A: PDB Molecule:xanthomonas outer protein d; PDBTitle: xanthomonas xopd c470a mutant 19 c1nyqA_ 16.3 22 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 20 d2beia1 16.1 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 21 d1euva_ not modelled 15.2 12 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 22 d2j0pa1 not modelled 15.0 25 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 23 d1pn0a3 not modelled 14.4 10 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:PHBH-like 24 c2q7bA_ not modelled 13.3 9 PDB header:transferase Chain: A: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase (np_689019.1) from2 streptococcus agalactiae 2603 at 2.00 a resolution 25 c3i7tA_ not modelled 13.2 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 26 c3d3aA_ not modelled 12.7 6 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 27 c3l47A_ not modelled 12.3 27 PDB header:transport protein Chain: A: PDB Molecule:odorant binding protein (agap010409-pa); PDBTitle: crystal structure of the anopheles gambiae odorant-binding protein 22a 28 c3qr3B_ not modelled 11.2 9 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase eg-ii; PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei) 29 c2zzjA_ not modelled 10.7 25 PDB header:lyase Chain: A: PDB Molecule:glucuronan lyase a; PDBTitle: crystal structure of endo-beta-1,4-glucuronan lyase from2 fungus trichoderma reesei 30 c3eayA_ not modelled 10.7 24 PDB header:hydrolase Chain: A: PDB Molecule:sentrin-specific protease 7; PDBTitle: crystal structure of the human senp7 catalytic domain 31 d2iy1a1 not modelled 10.7 12 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 32 d1wfxa_ not modelled 10.5 15 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:Tpt1/KptA 33 d1th0a_ not modelled 10.2 24 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 34 d1jnda1 not modelled 9.7 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 35 c1pbtA_ not modelled 9.6 21 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima 36 c1vp7D_ not modelled 9.6 38 PDB header:hydrolase Chain: D: PDB Molecule:exodeoxyribonuclease vii small subunit; PDBTitle: crystal structure of exodeoxyribonuclease vii small subunit2 (np_881400.1) from bordetella pertussis at 2.40 a resolution 37 c2r8rB_ not modelled 9.0 32 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 38 d1fnna1 not modelled 8.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 39 d2fr1a1 not modelled 8.5 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 40 d1dqua_ not modelled 8.1 22 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 41 c3ga9S_ not modelled 8.1 31 PDB header:hydrolase Chain: S: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii 42 c3nnqA_ not modelled 8.0 14 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 43 d1tdja2 not modelled 8.0 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 44 d1z4ra1 not modelled 8.0 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 45 c1ur8B_ not modelled 7.7 14 PDB header:hydrolase Chain: B: PDB Molecule:chitinase b; PDBTitle: interactions of a family 18 chitinase with the designed2 inhibitor hm508, and its degradation product,3 chitobiono-delta-lactone 46 c3qokA_ not modelled 7.7 16 PDB header:hydrolase Chain: A: PDB Molecule:putative chitinase ii; PDBTitle: crystal structure of putative chitinase ii from klebsiella pneumoniae 47 c3g3sA_ not modelled 7.5 15 PDB header:transferase Chain: A: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of gcn5-related n-acetyltransferase-like protein2 (zp_00874857) (zp_00874857.1) from streptococcus suis 89/1591 at 1.803 a resolution 48 d1n71a_ not modelled 7.3 16 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 49 d2g4da1 not modelled 7.1 12 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 50 d1xpja_ not modelled 7.1 28 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 51 d1q2ya_ not modelled 7.0 12 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 52 c2qw5B_ not modelled 7.0 8 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 53 d1vp7a_ not modelled 6.8 41 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 54 c2uwqA_ not modelled 6.8 31 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-stimulating of p53 protein 2; PDBTitle: solution structure of aspp2 n-terminus 55 d1vhxa_ not modelled 6.8 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 56 c1g5hA_ not modelled 6.7 21 PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma 57 d1u5la_ not modelled 6.7 38 Fold:Prion-like Superfamily:Prion-like Family:Prion-like 58 d2atra1 not modelled 6.6 11 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 59 d2bkra1 not modelled 6.6 6 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 60 d1qf6a1 not modelled 6.6 14 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 61 d1vp7b_ not modelled 6.6 41 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 62 c3duzA_ not modelled 6.5 19 PDB header:viral protein Chain: A: PDB Molecule:major envelope glycoprotein; PDBTitle: crystal structure of the postfusion form of baculovirus2 fusion protein gp64 63 d1y9wa1 not modelled 6.4 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 64 c2dskA_ not modelled 6.3 15 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus 65 d1vpqa_ not modelled 6.3 24 Fold:TIM beta/alpha-barrel Superfamily:TM1631-like Family:TM1631-like 66 c1rk8C_ not modelled 6.1 56 PDB header:translation Chain: C: PDB Molecule:within the bgcn gene intron protein; PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex 67 d1rk8c_ not modelled 6.1 56 Fold:WW domain-like Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain 68 c1yb2A_ not modelled 6.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0852; PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum. 69 d1yb2a1 not modelled 6.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 70 c2huzB_ not modelled 6.1 11 PDB header:structural genomics, transferase Chain: B: PDB Molecule:glucosamine 6-phosphate n-acetyltransferase; PDBTitle: crystal structure of gnpnat1 71 c3dd7A_ not modelled 6.0 24 PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd 72 d2hd9a1 not modelled 5.8 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 73 c3kruC_ not modelled 5.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 74 d1jeyb1 not modelled 5.7 18 Fold:SPOC domain-like Superfamily:SPOC domain-like Family:Ku80 subunit middle domain 75 c3grcD_ not modelled 5.7 17 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 76 d1h4pa_ not modelled 5.5 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 77 c2l6pA_ not modelled 5.2 26 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:phac1, phac2 and phad genes; PDBTitle: nmr solution structure of the protein np_253742.1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0