Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	F	Q	A	I	V	L	A	S	F	L	V	M	P	Y	A	L	A	D	D	Q	G	G	L	K	Q	D	A	A	P	P	P	P	H	A	I	E	D	G	Y	R	G	T	D	D	A	K	K	M	T	V	D	F	A	K	T	M	H	D
Secondary structure
SS confidence
Disorder		?	?	?																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	A	S	V	S	L	R	G	N	L	I	S	H	K	G	E	D	R	Y	V	F	R	D	K	S	G	E	I	N	V	V	I	P	A	A	V	F	D	G	R	E	V	Q	P	D	Q	M	I	N	I	S	G	S	L	D	K	K	S	A	P
Secondary structure
SS confidence
Disorder		?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130
Sequence		A	V	V	R	V	T	H	L	Q	K
Secondary structure
SS confidence
Disorder										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nnx chain A Region: 38 - 130 Aligned: 92 Modelled: 93 Confidence: 100.0% Identity: 35% Fold: OB-fold Superfamily: Hypothetical protein YgiW Family: Hypothetical protein YgiW Phyre2 PDB 1b8a chain A domain 1 Region: 51 - 129 Aligned: 79 Modelled: 79 Confidence: 96.1% Identity: 13% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1l0w chain A domain 1 Region: 51 - 129 Aligned: 78 Modelled: 79 Confidence: 96.1% Identity: 22% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1b8a chain B Region: 51 - 129 Aligned: 78 Modelled: 79 Confidence: 96.1% Identity: 14% PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Phyre2 PDB 1wyd chain B Region: 51 - 129 Aligned: 79 Modelled: 79 Confidence: 96.1% Identity: 19% PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii Phyre2 PDB 2pi2 chain A domain 1 Region: 51 - 130 Aligned: 76 Modelled: 80 Confidence: 96.0% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 1n9w chain A domain 1 Region: 50 - 129 Aligned: 75 Modelled: 80 Confidence: 95.8% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 2pi2 chain A Region: 51 - 130 Aligned: 76 Modelled: 80 Confidence: 95.4% Identity: 16% PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 Phyre2 PDB 3mxn chain B Region: 43 - 129 Aligned: 86 Modelled: 87 Confidence: 95.3% Identity: 19% PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex Phyre2 PDB 1c0a chain A domain 1 Region: 51 - 129 Aligned: 79 Modelled: 79 Confidence: 95.2% Identity: 20% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3kf6 chain A Region: 62 - 129 Aligned: 68 Modelled: 68 Confidence: 95.0% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex Phyre2 PDB 3i7f chain A Region: 37 - 129 Aligned: 93 Modelled: 93 Confidence: 94.7% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Phyre2 PDB 1eqr chain C Region: 51 - 129 Aligned: 79 Modelled: 79 Confidence: 94.6% Identity: 22% PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli Phyre2 PDB 3bju chain B Region: 56 - 129 Aligned: 74 Modelled: 74 Confidence: 93.6% Identity: 15% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Phyre2 PDB 3m4q chain A Region: 56 - 129 Aligned: 74 Modelled: 74 Confidence: 93.5% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) Phyre2 PDB 1x55 chain A Region: 50 - 129 Aligned: 80 Modelled: 80 Confidence: 93.4% Identity: 21% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue Phyre2 PDB 3e9h chain B Region: 61 - 129 Aligned: 69 Modelled: 69 Confidence: 93.4% Identity: 16% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Phyre2 PDB 1eov chain A domain 1 Region: 50 - 129 Aligned: 80 Modelled: 80 Confidence: 93.0% Identity: 14% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1efw chain A Region: 51 - 129 Aligned: 79 Modelled: 79 Confidence: 91.3% Identity: 19% PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli Phyre2 PDB 3e0e chain A Region: 56 - 129 Aligned: 71 Modelled: 74 Confidence: 91.0% Identity: 14% PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b Phyre2 1 d1nnxa_ 2 d1b8aa1 3 d1l0wa1 4 c1b8aB_ 5 c1wydB_ 6 d2pi2a1 7 d1n9wa1 8 c2pi2A_ 9 c3mxnB_ 10 d1c0aa1 11 c3kf6A_ 12 c3i7fA_ 13 c1eqrC_ 14 c3bjuB_ 15 c3m4qA_ 16 c1x55A_ 17 c3e9hB_ 18 d1eova1 19 c1efwA_ 20 c3e0eA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nnxa_ 100.0 35 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 2 d1b8aa1 96.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 3 d1l0wa1 96.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 4 c1b8aB_ 96.1 14 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 5 c1wydB_ 96.1 19 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 6 d2pi2a1 96.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 7 d1n9wa1 95.8 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 8 c2pi2A_ 95.4 16 PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 9 c3mxnB_ 95.3 19 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 10 d1c0aa1 95.2 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 11 c3kf6A_ 95.0 13 PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 12 c3i7fA_ 94.7 15 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 13 c1eqrC_ 94.6 22 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 14 c3bjuB_ 93.6 15 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 15 c3m4qA_ 93.5 22 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 16 c1x55A_ 93.4 21 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 17 c3e9hB_ 93.4 16 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 18 d1eova1 93.0 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 19 c1efwA_ 91.3 19 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 20 c3e0eA_ 91.0 14 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 21 d1bbua1 not modelled 90.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 22 d1e1oa1 not modelled 90.9 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 23 c1n9wA_ not modelled 90.5 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 24 d2oq0a1 not modelled 90.3 16 Fold:OB-fold Superfamily:HIN-2000 domain-like Family:HIN-200/IF120x domain 25 c2xgtB_ not modelled 89.1 17 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 26 c1e22A_ not modelled 86.4 20 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 27 c3dm3A_ not modelled 86.3 19 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 28 d1gm5a2 not modelled 85.1 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 29 c3b6yB_ not modelled 83.3 16 PDB header:protein binding Chain: B: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the second hin-200 domain of interferon-inducible2 protein 16 30 c3kf8C_ not modelled 83.2 16 PDB header:structural protein Chain: C: PDB Molecule:protein stn1; PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex 31 d1krta_ not modelled 80.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 32 d1sr3a_ not modelled 77.0 13 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 33 c1asyA_ not modelled 72.0 14 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 34 c3e0jG_ not modelled 70.5 16 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 35 c2k75A_ not modelled 68.6 14 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ta0387; PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b. 36 c3hbcA_ not modelled 63.3 15 PDB header:hydrolase Chain: A: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of choloylglycine hydrolase from bacteroides2 thetaiotaomicron vpi 37 c2oq0D_ not modelled 62.7 15 PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16 38 d1t9ha1 not modelled 49.6 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 c1gm5A_ not modelled 46.1 8 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 40 d1j6qa_ not modelled 44.4 21 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 41 c1j6qA_ not modelled 44.4 21 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 42 c2hezB_ not modelled 38.2 24 PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase 43 d1cz5a1 not modelled 36.2 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 44 c2kenA_ not modelled 35.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a. 45 c3cp0A_ not modelled 35.5 8 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 46 d2pi2e1 not modelled 34.3 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 47 d1jt8a_ not modelled 31.8 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 c3obyB_ not modelled 31.5 16 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 49 c3ka5A_ not modelled 31.2 32 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 50 d2vgna1 not modelled 27.0 13 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 51 d2cs7a1 not modelled 26.9 13 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 52 c2bx6A_ not modelled 26.6 21 PDB header:transduction protein Chain: A: PDB Molecule:xrp2 protein; PDBTitle: crystal structure of the human retinitis pigmentosa2 protein 2 (rp2) 53 c2k5hA_ not modelled 26.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 54 d2pvaa_ not modelled 25.5 35 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase 55 c3k2tA_ not modelled 23.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 56 d1qcsa1 not modelled 23.9 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 57 d2heqa1 not modelled 23.8 30 Fold:SH3-like barrel Superfamily:YorP-like Family:YorP-like 58 c2pqaB_ not modelled 23.8 11 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 59 d1u0la1 not modelled 22.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c2bjgB_ not modelled 22.7 24 PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate 61 c2oqkA_ not modelled 22.5 17 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 62 d2exda1 not modelled 22.3 10 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 63 c3h43F_ not modelled 21.8 19 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 64 c2vgmA_ not modelled 21.7 9 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 65 c1cz5A_ not modelled 21.3 10 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 66 d2do3a1 not modelled 20.7 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 67 d2cu3a1 not modelled 20.5 5 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 68 c2k50A_ not modelled 19.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 69 c2kl0A_ not modelled 19.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 70 d1tygb_ not modelled 18.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 71 c3cl5A_ not modelled 18.6 38 PDB header:hydrolase Chain: A: PDB Molecule:hemagglutinin-esterase; PDBTitle: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-2 diacetyl sialic acid 72 d1hr0w_ not modelled 18.3 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d1vr3a1 not modelled 18.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 74 c1tygG_ not modelled 17.8 21 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 75 c2wg6L_ not modelled 17.7 17 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 76 d1qkia2 not modelled 16.6 13 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 77 c3e0dA_ not modelled 15.9 25 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 78 c2oqcB_ not modelled 15.5 18 PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis 79 c3cwiA_ not modelled 15.4 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 80 d1h9aa2 not modelled 15.3 7 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 81 d1t44g_ not modelled 14.9 24 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 82 d1o7ia_ not modelled 14.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 83 d1zud21 not modelled 13.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 84 c1h9aA_ not modelled 13.0 7 PDB header:oxidoreductase (choh(d) - nad(p)) Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase; PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp 85 d1ytfc_ not modelled 12.9 16 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 86 d1v1qa_ not modelled 12.9 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 87 c3i4oA_ not modelled 12.6 8 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 88 c2yk5A_ not modelled 12.5 15 PDB header:transferase Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3- PDBTitle: structure of neisseria los-specific sialyltransferase (nst),2 in complex with cmp. 89 d1ah9a_ not modelled 12.2 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 c2bhlB_ not modelled 12.0 13 PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate 91 d1nvpc_ not modelled 11.9 21 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 92 c1nvpC_ not modelled 11.9 21 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 93 c3f6hA_ not modelled 11.7 16 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 94 d1umua_ not modelled 11.4 3 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 95 d1nh2c_ not modelled 11.2 16 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 96 c1nh2C_ not modelled 11.2 16 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 97 c1qkiE_ not modelled 11.1 13 PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+ 98 d1g4ma2 not modelled 11.0 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 99 c2pjhB_ not modelled 10.9 15 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0