Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9S4W9
DateThu Jan 5 12:38:22 GMT 2012
Unique Job ID6c67161201d43444

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1p42a2
Top template information
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
Confidence and coverage
Confidence: 53.5% Coverage: 9%
24 residues ( 9% of your sequence) have been modelled with 53.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNENTTLNALICRHARNLLLAQGWPEETDVDQRNPKYPGWISIYVLLDAPRLATLLVNRH
Secondary structure 
SS confidence 
Disorder  ??????
?
?
?
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GGVLPPHLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVSFPYAGEWLTEDEIRAVL
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AAVRDAVRSVSCRVAEDMRRIRAALTTTGQTLLTRQTRRFRLVVKESDHPCWLDEDDENL
Secondary structure 
SS confidence 
Disorder 
??
??
??
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDVLRIPDEPPRQWFDRGVLREVVR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250........
Sequence  EARAEIRSMADALAKIRG
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1p42 chain A domain 2

3D model

Region: 204 - 227
Aligned: 24
Modelled: 24
Confidence: 53.5%
Identity: 46%
Fold: Ribosomal protein S5 domain 2-like
Superfamily: Ribosomal protein S5 domain 2-like
Family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC

Phyre2

PDB 3nzk chain B

3D model

Region: 204 - 227
Aligned: 24
Modelled: 24
Confidence: 39.8%
Identity: 50%
PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor

Phyre2

PDB 1lm6 chain A

3D model

Region: 70 - 126
Aligned: 55
Modelled: 57
Confidence: 39.4%
Identity: 16%
Fold: Peptide deformylase
Superfamily: Peptide deformylase
Family: Peptide deformylase

Phyre2

PDB 1nml chain A

3D model

Region: 58 - 124
Aligned: 39
Modelled: 40
Confidence: 37.4%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)

Phyre2

PDB 2v07 chain A

3D model

Region: 105 - 125
Aligned: 21
Modelled: 21
Confidence: 37.4%
Identity: 24%
PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant

Phyre2

PDB 2c1u chain B

3D model

Region: 58 - 124
Aligned: 39
Modelled: 40
Confidence: 36.4%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form

Phyre2

PDB 2l4d chain A

3D model

Region: 105 - 125
Aligned: 19
Modelled: 21
Confidence: 31.0%
Identity: 21%
PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida

Phyre2

PDB 3o5c chain A

3D model

Region: 111 - 124
Aligned: 14
Modelled: 14
Confidence: 27.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis

Phyre2

PDB 2a1v chain A domain 1

3D model

Region: 39 - 82
Aligned: 44
Modelled: 44
Confidence: 26.9%
Identity: 23%
Fold: Secretion chaperone-like
Superfamily: YjbR-like
Family: YjbR-like

Phyre2

PDB 1miu chain A domain 3

3D model

Region: 39 - 92
Aligned: 45
Modelled: 54
Confidence: 26.8%
Identity: 38%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Single strand DNA-binding domain, SSB

Phyre2

PDB 1h32 chain B

3D model

Region: 105 - 124
Aligned: 20
Modelled: 20
Confidence: 25.6%
Identity: 20%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1iyj chain B

3D model

Region: 39 - 83
Aligned: 36
Modelled: 45
Confidence: 25.4%
Identity: 42%
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex

Phyre2

PDB 1mje chain A

3D model

Region: 39 - 83
Aligned: 36
Modelled: 45
Confidence: 24.0%
Identity: 42%
PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex

Phyre2

PDB 3cu4 chain A

3D model

Region: 105 - 126
Aligned: 22
Modelled: 22
Confidence: 23.0%
Identity: 5%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens

Phyre2

PDB 1ccr chain A

3D model

Region: 105 - 124
Aligned: 18
Modelled: 20
Confidence: 22.5%
Identity: 17%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1i8o chain A

3D model

Region: 111 - 124
Aligned: 14
Modelled: 14
Confidence: 21.6%
Identity: 21%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1iqc chain B

3D model

Region: 111 - 124
Aligned: 14
Modelled: 14
Confidence: 21.6%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea

Phyre2

PDB 1unl chain D

3D model

Region: 12 - 34
Aligned: 23
Modelled: 23
Confidence: 20.6%
Identity: 30%
Fold: Cyclin-like
Superfamily: Cyclin-like
Family: Cyclin

Phyre2

PDB 1b9h chain A

3D model

Region: 102 - 129
Aligned: 28
Modelled: 28
Confidence: 20.3%
Identity: 25%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3c2c chain A

3D model

Region: 111 - 124
Aligned: 14
Modelled: 14
Confidence: 20.0%
Identity: 36%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
1
d1p42a2
2
c3nzkB_
3
d1lm6a_
4
c1nmlA_
5
c2v07A_
6
c2c1uB_
7
c2l4dA_
8
c3o5cA_
9
d2a1va1
10
d1miua3
11
d1h32b_
12
c1iyjB_
13
c1mjeA_
14
c3cu4A_
15
d1ccra_
16
d1i8oa_
17
c1iqcB_
18
d1unld_
19
d1b9ha_
20
d3c2ca_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1p42a2
53.5 46 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
2c3nzkB_
39.8 50 PDB header:hydrolase
Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor
3d1lm6a_
39.4 16 Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
4c1nmlA_
37.4 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
5c2v07A_
37.4 24 PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
6c2c1uB_
36.4 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form
7c2l4dA_
31.0 21 PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
8c3o5cA_
27.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis
9d2a1va1
26.9 23 Fold:Secretion chaperone-like
Superfamily:YjbR-like
Family:YjbR-like
10d1miua3
26.8 38 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
11d1h32b_
25.6 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
12c1iyjB_
25.4 42 PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex
13c1mjeA_
24.0 42 PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex
14c3cu4A_
23.0 5 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
15d1ccra_
22.5 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
16d1i8oa_
21.6 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
17c1iqcB_
21.6 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
18d1unld_
20.6 30 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
19d1b9ha_
20.3 25 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
20d3c2ca_
20.0 36 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
21d1nmla2
not modelled 19.8 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
22d1jdla_
not modelled 19.3 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23c1unhD_
not modelled 19.0 30 PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
24d1eb7a2
not modelled 18.7 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
25d1gksa_
not modelled 18.6 9 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
26c1zxjB_
not modelled 18.2 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein mg377 homolog;
PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555
27c2w9kA_
not modelled 17.7 21 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crithidia fasciculata cytochrome c
28d1iqca2
not modelled 17.6 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
29d1iyjb3
not modelled 17.6 38 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
30c2vesA_
not modelled 17.2 54 PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor
31c3l4oB_
not modelled 17.0 21 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:methylamine utilization protein maug;
PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide
32d2evra1
not modelled 16.9 42 Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:Spr N-terminal domain-like
33c3hq7A_
not modelled 16.7 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
34d1ls9a_
not modelled 16.7 41 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
35c3dmiA_
not modelled 16.3 38 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
36d1hzua1
not modelled 15.4 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
37d2c8sa1
not modelled 15.2 35 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
38d1ufya_
not modelled 15.0 25 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
39d1c52a_
not modelled 14.8 30 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
40c2vhdB_
not modelled 14.8 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
41c3oa8B_
not modelled 13.7 47 PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
42d1gdva_
not modelled 13.6 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
43d1j3sa_
not modelled 13.2 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
44d1hroa_
not modelled 13.2 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
45c2krxA_
not modelled 13.1 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120.2 northeast structural genomics consortium target id nsr244.
46c3f4mA_
not modelled 13.0 19 PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 8-
PDBTitle: crystal structure of tipe2
47c1npyA_
not modelled 12.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like
PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607
48c1w2lA_
not modelled 12.6 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
49d1cyja_
not modelled 12.4 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
50d1npya1
not modelled 12.2 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
51d1co6a_
not modelled 12.2 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
52d1dy7b1
not modelled 12.1 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
53d1cxca_
not modelled 11.4 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
54d1fj2a_
not modelled 11.2 16 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carboxylesterase/thioesterase 1
55d1ql3a_
not modelled 10.9 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
56c1miuA_
not modelled 10.7 38 PDB header:gene regulation/antitumor protein
Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: structure of a brca2-dss1 complex
57d1c6sa_
not modelled 10.7 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
58c2c1dB_
not modelled 10.4 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:soxx;
PDBTitle: crystal structure of soxxa from p. pantotrophus
59c2go4A_
not modelled 10.3 45 PDB header:hydrolase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine
PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514
60d1h9xa1
not modelled 10.3 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
61c2zzsW_
not modelled 10.2 27 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
62d1c6ra_
not modelled 10.0 48 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
63d1pmma_
not modelled 9.1 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
64d1cota_
not modelled 9.0 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
65d1dvha_
not modelled 9.0 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
66c3mgjA_
not modelled 8.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1480;
PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a.
67d1e2rb1
not modelled 8.8 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
68d1lfma_
not modelled 8.5 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
69c3dr0B_
not modelled 8.5 31 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
70c2js3B_
not modelled 8.5 50 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q6n9a4_rhopa. northeast structural genomics2 consortium target rpt8
71c3l87A_
not modelled 8.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159
72d1lmsa_
not modelled 8.4 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
73c3o0rC_
not modelled 8.2 17 PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
74d1ctja_
not modelled 8.0 48 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
75c2zonG_
not modelled 8.0 36 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
76d1m70a1
not modelled 7.9 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
77d1e6ya1
not modelled 7.9 42 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
78c2vofD_
not modelled 7.7 47 PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-binding component 3;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
79d1q3ja_
not modelled 7.5 45 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Gurmarin-like
Family:Antifungal peptide
80c2vofB_
not modelled 7.4 47 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
81d1m70a2
not modelled 7.1 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
82c3cp5A_
not modelled 6.9 35 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
83d2gc4d1
not modelled 6.5 35 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
84d1yeba_
not modelled 6.5 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
85c3nswA_
not modelled 6.4 32 PDB header:immune system
Chain: A: PDB Molecule:excretory-secretory protein 2;
PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2
86d1wvec1
not modelled 6.3 5 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
87c1m70D_
not modelled 6.3 21 PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
88c2jv2A_
not modelled 6.3 23 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ph1500;
PDBTitle: solution structure of the n-terminal domain of ph1500
89d1h1oa2
not modelled 6.0 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
90c2fhyL_
not modelled 6.0 15 PDB header:hydrolase
Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1;
PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor
91c2v5jB_
not modelled 6.0 22 PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
92d2dbsa1
not modelled 6.0 30 Fold:TTHC002-like
Superfamily:TTHC002-like
Family:TTHC002-like
93d1qz9a_
not modelled 5.9 9 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
94c1txlA_
not modelled 5.9 34 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:metal-binding protein yoda;
PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149
95d1txla_
not modelled 5.9 34 Fold:Lipocalins
Superfamily:Lipocalins
Family:Hypothetical protein YodA
96c2jmbA_
not modelled 5.9 60 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu4866;
PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens
97d2inca1
not modelled 5.8 100 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
98d1c53a_
not modelled 5.8 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
99c2huuA_
not modelled 5.8 26 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0