Secondary structure and disorder prediction

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Sequence		M	S	D	D	V	A	L	P	L	E	F	T	D	A	A	A	N	K	V	K	S	L	I	A	D	E	D	N	P	N	L	K	L	R	V	Y	I	T	G	G	G	C	S	G	F	Q	Y	G	F	T	F	D	D	Q	V	N	E	G	D	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Sequence		T	I	E	K	Q	G	V	G	L	V	V	D	P	M	S	L	Q	Y	L	V	G	G	S	V	D	Y	T	E	G	L	E	G	S	R	F	I	V	T	N	P	N	A	K	S	T	C	G	C	G	S	S	F	S	I
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2apn chain A Region: 1 - 114 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 82% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure Phyre2 PDB 2d2a chain A Region: 3 - 114 Aligned: 111 Modelled: 112 Confidence: 100.0% Identity: 29% PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters Phyre2 PDB 1x0g chain A Region: 9 - 114 Aligned: 98 Modelled: 106 Confidence: 100.0% Identity: 32% PDB header:metal binding protein Chain: A: PDB Molecule:isca; PDBTitle: crystal structure of isca with the [2fe-2s] cluster Phyre2 PDB 1s98 chain A Region: 8 - 104 Aligned: 96 Modelled: 97 Confidence: 100.0% Identity: 33% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 2k4z chain A Region: 3 - 102 Aligned: 99 Modelled: 100 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 Phyre2 PDB 1nwb chain A Region: 3 - 100 Aligned: 98 Modelled: 98 Confidence: 100.0% Identity: 38% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 2p2e chain A domain 1 Region: 7 - 102 Aligned: 91 Modelled: 96 Confidence: 98.7% Identity: 20% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 2qgo chain A Region: 7 - 103 Aligned: 90 Modelled: 97 Confidence: 98.6% Identity: 23% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus Phyre2 PDB 1vsr chain A Region: 44 - 72 Aligned: 29 Modelled: 29 Confidence: 23.3% Identity: 7% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Very short patch repair (VSR) endonuclease Phyre2 PDB 1sp2 chain A Region: 105 - 113 Aligned: 9 Modelled: 9 Confidence: 19.1% Identity: 44% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2kvf chain A Region: 104 - 114 Aligned: 11 Modelled: 11 Confidence: 17.5% Identity: 45% PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein Phyre2 PDB 1zfd chain A Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 16.9% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1a1i chain A domain 1 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 15.4% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1aay chain A domain 1 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 14.9% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1ubd chain C domain 3 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 14.5% Identity: 71% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1a1h chain A domain 1 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 13.9% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2nq2 chain C Region: 59 - 111 Aligned: 44 Modelled: 50 Confidence: 13.1% Identity: 20% PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. Phyre2 PDB 1a1g chain A domain 1 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 13.1% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1tf3 chain A domain 2 Region: 107 - 113 Aligned: 7 Modelled: 7 Confidence: 13.1% Identity: 43% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 1f2i chain G domain 1 Region: 106 - 113 Aligned: 8 Modelled: 8 Confidence: 12.7% Identity: 50% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 1 c2apnA_ 2 c2d2aA_ 3 c1x0gA_ 4 d1s98a_ 5 c2k4zA_ 6 d1nwba_ 7 d2p2ea1 8 c2qgoA_ 9 d1vsra_ 10 d1sp2a_ 11 c2kvfA_ 12 d1zfda_ 13 d1a1ia1 14 d1aaya1 15 d1ubdc3 16 d1a1ha1 17 c2nq2C_ 18 d1a1ga1 19 d1tf3a2 20 d1f2ig1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2apnA_ 100.0 82 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 2 c2d2aA_ 100.0 29 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 3 c1x0gA_ 100.0 32 PDB header:metal binding protein Chain: A: PDB Molecule:isca; PDBTitle: crystal structure of isca with the [2fe-2s] cluster 4 d1s98a_ 100.0 33 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 5 c2k4zA_ 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 6 d1nwba_ 100.0 38 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 7 d2p2ea1 98.7 20 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 8 c2qgoA_ 98.6 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus 9 d1vsra_ 23.3 7 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 10 d1sp2a_ 19.1 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 11 c2kvfA_ 17.5 45 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 12 d1zfda_ 16.9 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 13 d1a1ia1 15.4 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 14 d1aaya1 14.9 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 15 d1ubdc3 14.5 71 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 16 d1a1ha1 13.9 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 17 c2nq2C_ 13.1 20 PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 18 d1a1ga1 13.1 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 19 d1tf3a2 13.1 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 20 d1f2ig1 12.7 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 21 d1u86a1 not modelled 12.6 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 22 d2a6sa1 not modelled 12.6 5 Fold:RelE-like Superfamily:RelE-like Family:YoeB/Txe-like 23 c1bcrA_ not modelled 12.3 28 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:serine carboxypeptidase ii; PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature 24 d2ns1b1 not modelled 12.1 10 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 25 d1wmia1 not modelled 12.0 11 Fold:RelE-like Superfamily:RelE-like Family:RelE-like 26 c3kxeD_ not modelled 11.9 20 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 27 d2yt9a1 not modelled 11.2 57 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 28 d1x6ea2 not modelled 10.1 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 29 d2glia3 not modelled 10.1 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 30 c3g5oC_ not modelled 10.0 24 PDB header:toxin/antitoxin Chain: C: PDB Molecule:uncharacterized protein rv2866; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 31 c1znmA_ not modelled 9.6 50 PDB header:zinc finger Chain: A: PDB Molecule:yy1; PDBTitle: a zinc finger with an artificial beta-turn, original2 sequence taken from the third zinc finger domain of the3 human transcriptional repressor protein yy1 (ying and yang4 1, a delta transcription factor), nmr, 34 structures 32 d2dlka2 not modelled 9.3 57 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 33 d1ncsa_ not modelled 9.3 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 34 c2ab3A_ not modelled 9.1 67 PDB header:rna binding protein Chain: A: PDB Molecule:znf29; PDBTitle: solution structures and characterization of hiv rre iib rna2 targeting zinc finger proteins 35 c2kdxA_ not modelled 8.7 13 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 36 d1jj7a_ not modelled 8.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 37 d1wgea1 not modelled 8.3 50 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 38 c2kdnA_ not modelled 8.2 60 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein pfe0790c; PDBTitle: solution structure of pfe0790c, a putative bola-like2 protein from the protozoan parasite plasmodium falciparum. 39 d1m0sa2 not modelled 8.1 23 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 40 d1v9ja_ not modelled 7.7 20 Fold:Alpha-lytic protease prodomain-like Superfamily:BolA-like Family:BolA-like 41 d1lk5a2 not modelled 7.6 16 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 42 c1va1A_ not modelled 7.6 43 PDB header:transcription Chain: A: PDB Molecule:transcription factor sp1; PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1) 43 c1zc1A_ not modelled 7.4 21 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 44 d2cota1 not modelled 7.3 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 45 d1ji0a_ not modelled 7.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 46 c2kheA_ not modelled 7.2 22 PDB header:hydrolase Chain: A: PDB Molecule:toxin-like protein; PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8 47 c2jn4A_ not modelled 7.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein fixu, nift; PDBTitle: solution nmr structure of protein rp4601 from2 rhodopseudomonas palustris. northeast structural genomics3 consortium target rpt2; ontario center for structural4 proteomics target rp4601. 48 d2jn4a1 not modelled 7.1 22 Fold:NifT/FixU barrel-like Superfamily:NifT/FixU-like Family:NifT/FixU 49 d2hq2a1 not modelled 7.1 20 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 50 c3a44D_ not modelled 7.1 20 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 51 c2wh44_ not modelled 6.9 67 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome 52 c2yujA_ not modelled 6.5 28 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 53 d1ywsa1 not modelled 6.4 56 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 54 c3f1f4_ not modelled 6.2 67 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: crystal structure of a translation termination complex2 formed with release factor rf2. this file contains the 50s3 subunit of one 70s ribosome. the entire crystal structure4 contains two 70s ribosomes as described in remark 400. 55 d2j0pa1 not modelled 6.2 17 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 56 d2j7ja1 not modelled 6.2 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 57 c1gxsC_ not modelled 6.2 23 PDB header:lyase Chain: C: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain a; PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme 58 d2a2ua_ not modelled 6.2 9 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 59 c3hlzA_ not modelled 6.2 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bt_1490; PDBTitle: crystal structure of bt_1490 (np_810393.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.50 a resolution 60 c2jr7A_ not modelled 6.1 67 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 61 c3kxeB_ not modelled 6.1 12 PDB header:protein binding Chain: B: PDB Molecule:toxin protein pare-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 62 c2cbzA_ not modelled 5.9 26 PDB header:transport Chain: A: PDB Molecule:multidrug resistance-associated protein 1; PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1 63 d1a1ia3 not modelled 5.9 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 64 d2cota2 not modelled 5.9 83 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 65 d3b60a1 not modelled 5.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 66 d1adta2 not modelled 5.7 40 Fold:Zn-binding domains of ADDBP Superfamily:Zn-binding domains of ADDBP Family:Zn-binding domains of ADDBP 67 d1ubdc2 not modelled 5.7 60 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 68 d2j0141 not modelled 5.6 40 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 69 c2j034_ not modelled 5.6 40 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii. 70 d1ewfa1 not modelled 5.6 0 Fold:Aha1/BPI domain-like Superfamily:Bactericidal permeability-increasing protein, BPI Family:Bactericidal permeability-increasing protein, BPI 71 c3gfoA_ not modelled 5.6 18 PDB header:atp binding protein Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1; PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq. 72 d1u85a1 not modelled 5.6 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 73 c3a0rA_ not modelled 5.5 19 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 74 c3c3jA_ not modelled 5.5 38 PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli 75 d1llmc2 not modelled 5.5 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 76 c2entA_ not modelled 5.4 63 PDB header:transcription Chain: A: PDB Molecule:krueppel-like factor 15; PDBTitle: solution structure of the second c2h2-type zinc finger2 domain from human krueppel-like factor 15 77 c2k6lA_ not modelled 5.2 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 78 c3t7lA_ not modelled 5.2 21 PDB header:transport protein Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 16; PDBTitle: crystal structure of the fyve domain of endofin (zfyve16) at 1.1a2 resolution 79 d2h85a2 not modelled 5.2 43 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 80 c2l72A_ not modelled 5.0 6 PDB header:protein binding Chain: A: PDB Molecule:actin depolymerizing factor, putative; PDBTitle: solution structure and dynamics of adf from toxoplasma gondii (tgadf) 81 c1areA_ not modelled 5.0 33 PDB header:transcription regulation Chain: A: PDB Molecule:yeast transcription factor adr1; PDBTitle: structures of dna-binding mutant zinc finger domains:2 implications for dna binding

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0