Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	R	S	Q	A	L	V	P	L	S	T	E	Q	Q	A	A	W	R	A	V	A	E	T	E	K	R	R	H	Q	G	N	T	L	A	E	Y	P	Y	A	G	A	F	F	R	C	L	N	G	S	R	R	I	S	L	S	D	L	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																								?	?	?	?	?															?		?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	F	M	P	S	L	T	A	E	E	L	H	G	N	R	L	Q	W	L	Y	A	I	D	V	L	I	E	T	Q	G	E	V	C	L	L	P	L	P	G	D	A	A	E	R	L	F	P	S	V	R	F	R	V	R	E	R	S	R	H	K
Secondary structure
SS confidence
Disorder		?		?			?		?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	A	L	V	M	Q	K	Y	S	R	Q	Q	A	R	E	A	E	Q	K	A	R	A	Y	Q	A	L	V	A	Q	A	E	I	E	L	A	F	H	S	P	E	T	V	G	S	W	H	A	R	W	S	D	R	V	A	E	H	D	L	E	T
Secondary structure
SS confidence
Disorder																												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		L	F	W	Q	W	G	E	R	F	P	S	L	A	G	M	E	R	W	Q	W	Q	D	M	P	F	W	Q	V	I	A	E	A	S	L	A	A	R	E	A	G	H	A	V	R	E	M	E	R	W	M	V	P	N	K	L	R	E	A	A
Secondary structure
SS confidence
Disorder																																						?	?	?	?													?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1kqp chain A Region: 61 - 105 Aligned: 43 Modelled: 45 Confidence: 58.1% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 1g5h chain A domain 2 Region: 149 - 176 Aligned: 27 Modelled: 28 Confidence: 50.4% Identity: 19% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 2l5y chain A Region: 33 - 86 Aligned: 54 Modelled: 54 Confidence: 45.9% Identity: 22% PDB header:signaling protein Chain: A: PDB Molecule:stromal interaction molecule 2; PDBTitle: nmr structure of calcium-loaded stim2 ef-sam. Phyre2 PDB 2ejn chain A domain 2 Region: 39 - 64 Aligned: 26 Modelled: 26 Confidence: 41.7% Identity: 19% Fold: Uteroglobin-like Superfamily: Uteroglobin-like Family: Uteroglobin-like Phyre2 PDB 2dna chain A domain 1 Region: 56 - 90 Aligned: 35 Modelled: 35 Confidence: 40.4% Identity: 23% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2isy chain A domain 1 Region: 69 - 105 Aligned: 33 Modelled: 37 Confidence: 38.9% Identity: 36% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 1rio chain A Region: 10 - 71 Aligned: 62 Modelled: 62 Confidence: 38.7% Identity: 19% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 1lli chain B Region: 10 - 82 Aligned: 73 Modelled: 73 Confidence: 38.4% Identity: 18% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 2oqo chain A domain 1 Region: 5 - 84 Aligned: 75 Modelled: 80 Confidence: 37.5% Identity: 20% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: PBP transglycosylase domain-like Phyre2 PDB 1g3w chain A domain 1 Region: 71 - 105 Aligned: 31 Modelled: 35 Confidence: 35.9% Identity: 35% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 2g4c chain A domain 2 Region: 156 - 176 Aligned: 21 Modelled: 21 Confidence: 35.0% Identity: 24% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 1puo chain A Region: 39 - 109 Aligned: 71 Modelled: 71 Confidence: 34.8% Identity: 10% PDB header:allergen Chain: A: PDB Molecule:major allergen i polypeptide, fused chain 2, PDBTitle: crystal structure of fel d 1- the major cat allergen Phyre2 PDB 3q4g chain A Region: 61 - 105 Aligned: 43 Modelled: 45 Confidence: 34.3% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae Phyre2 PDB 2k60 chain A Region: 40 - 86 Aligned: 47 Modelled: 47 Confidence: 29.9% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:protein (stromal interaction molecule 1); PDBTitle: nmr structure of calcium-loaded stim1 ef-sam Phyre2 PDB 2jqq chain A Region: 75 - 114 Aligned: 40 Modelled: 40 Confidence: 29.2% Identity: 18% PDB header:protein transport Chain: A: PDB Molecule:conserved oligomeric golgi complex subunit 2; PDBTitle: solution structure of saccharomyces cerevisiae conserved2 oligomeric golgi subunit 2 protein (cog2p) Phyre2 PDB 2ev0 chain A domain 1 Region: 73 - 105 Aligned: 29 Modelled: 33 Confidence: 25.1% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 2p14 chain A Region: 42 - 83 Aligned: 42 Modelled: 42 Confidence: 21.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:heterodimeric restriction endonuclease r.bspd6i small PDBTitle: crystal structure of small subunit (r.bspd6i2) of the heterodimeric2 restriction endonuclease r.bspd6i Phyre2 PDB 3zqs chain B Region: 203 - 213 Aligned: 11 Modelled: 11 Confidence: 21.0% Identity: 36% PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain Phyre2 PDB 2ejn chain B Region: 39 - 64 Aligned: 26 Modelled: 26 Confidence: 20.7% Identity: 19% PDB header:allergen Chain: B: PDB Molecule:major allergen i polypeptide chain 1, chain 2; PDBTitle: structural characterization of the tetrameric form of the2 major cat allergen fel d 1 Phyre2 PDB 1r57 chain A Region: 25 - 46 Aligned: 22 Modelled: 22 Confidence: 20.5% Identity: 18% Fold: Acyl-CoA N-acyltransferases (Nat) Superfamily: Acyl-CoA N-acyltransferases (Nat) Family: N-acetyl transferase, NAT Phyre2 1 d1kqpa_ 2 d1g5ha2 3 c2l5yA_ 4 d2ejna2 5 d2dnaa1 6 d2isya1 7 d1rioa_ 8 d1llib_ 9 d2oqoa1 10 d1g3wa1 11 d2g4ca2 12 c1puoA_ 13 c3q4gA_ 14 c2k60A_ 15 c2jqqA_ 16 d2ev0a1 17 c2p14A_ 18 c3zqsB_ 19 c2ejnB_ 20 d1r57a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1kqpa_ 58.1 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 2 d1g5ha2 50.4 19 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 3 c2l5yA_ 45.9 22 PDB header:signaling protein Chain: A: PDB Molecule:stromal interaction molecule 2; PDBTitle: nmr structure of calcium-loaded stim2 ef-sam. 4 d2ejna2 41.7 19 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 5 d2dnaa1 40.4 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 6 d2isya1 38.9 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 7 d1rioa_ 38.7 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 8 d1llib_ 38.4 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 9 d2oqoa1 37.5 20 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 10 d1g3wa1 35.9 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 11 d2g4ca2 35.0 24 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 12 c1puoA_ 34.8 10 PDB header:allergen Chain: A: PDB Molecule:major allergen i polypeptide, fused chain 2, PDBTitle: crystal structure of fel d 1- the major cat allergen 13 c3q4gA_ 34.3 16 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 14 c2k60A_ 29.9 15 PDB header:signaling protein Chain: A: PDB Molecule:protein (stromal interaction molecule 1); PDBTitle: nmr structure of calcium-loaded stim1 ef-sam 15 c2jqqA_ 29.2 18 PDB header:protein transport Chain: A: PDB Molecule:conserved oligomeric golgi complex subunit 2; PDBTitle: solution structure of saccharomyces cerevisiae conserved2 oligomeric golgi subunit 2 protein (cog2p) 16 d2ev0a1 25.1 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 17 c2p14A_ 21.7 17 PDB header:hydrolase Chain: A: PDB Molecule:heterodimeric restriction endonuclease r.bspd6i small PDBTitle: crystal structure of small subunit (r.bspd6i2) of the heterodimeric2 restriction endonuclease r.bspd6i 18 c3zqsB_ 21.0 36 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain 19 c2ejnB_ 20.7 19 PDB header:allergen Chain: B: PDB Molecule:major allergen i polypeptide chain 1, chain 2; PDBTitle: structural characterization of the tetrameric form of the2 major cat allergen fel d 1 20 d1r57a_ 20.5 18 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 21 d2hf5a1 not modelled 18.8 39 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 22 c3k1lA_ not modelled 18.0 18 PDB header:ligase Chain: A: PDB Molecule:fancl; PDBTitle: crystal structure of fancl 23 d2vqca1 not modelled 17.6 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 24 c2vqcA_ not modelled 17.6 27 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 25 c3kk4B_ not modelled 16.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 26 c3olmA_ not modelled 16.4 12 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rsp5; PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase 27 d2daha1 not modelled 16.2 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 28 c2dahA_ not modelled 16.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 29 c3dpiA_ not modelled 15.7 21 PDB header:ligase Chain: A: PDB Molecule:nad+ synthetase; PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei 30 c1g5hA_ not modelled 15.4 19 PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma 31 d1jdqa_ not modelled 15.4 56 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 32 c3fl2A_ not modelled 14.6 20 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1 33 d1w55a2 not modelled 14.2 15 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 34 c3h4sE_ not modelled 14.2 17 PDB header:motor protein/calcium binding protein Chain: E: PDB Molecule:kcbp interacting ca2+-binding protein; PDBTitle: structure of the complex of a mitotic kinesin with its2 calcium binding regulator 35 c1wygA_ not modelled 14.2 22 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 36 c2uzhB_ not modelled 13.9 15 PDB header:lyase Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf) 37 c3li6G_ not modelled 13.6 23 PDB header:metal binding protein Chain: G: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 38 c3li6J_ not modelled 13.6 23 PDB header:metal binding protein Chain: J: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 39 c3li6A_ not modelled 13.5 23 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 40 c3li6D_ not modelled 13.4 20 PDB header:metal binding protein Chain: D: PDB Molecule:calcium-binding protein; PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica 41 c3nuwC_ not modelled 13.4 30 PDB header:transferase Chain: C: PDB Molecule:2-oxo-3-deoxygalactonate kinase; PDBTitle: crystal structure of 2-oxo-3-deoxygalactonate kinase from klebsiella2 pneumoniae 42 d1gx1a_ not modelled 13.4 15 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 43 d1t0aa_ not modelled 13.2 18 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 44 c1ozsA_ not modelled 12.9 14 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i 45 c3g1nA_ not modelled 12.8 12 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1; PDBTitle: catalytic domain of the human e3 ubiquitin-protein ligase2 huwe1 46 c3hzsA_ not modelled 12.5 11 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 47 c2kzvA_ not modelled 12.5 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 48 c2pmpA_ not modelled 12.4 12 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana 49 c1no1C_ not modelled 11.8 42 PDB header:replication Chain: C: PDB Molecule:replisome organizer; PDBTitle: structure of truncated variant of b.subtilis spp1 phage g39p helicase2 loader/inhibitor protein 50 d1b76a2 not modelled 11.8 24 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 51 d1pava_ not modelled 11.7 44 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 52 c3dr5A_ not modelled 11.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative o-methyltransferase; PDBTitle: crystal structure of the q8nrd3_corgl protein from2 corynebacterium glutamicum. northeast structural genomics3 consortium target cgr117. 53 c2vy2A_ not modelled 11.5 75 PDB header:transcription Chain: A: PDB Molecule:protein leafy; PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter 54 d1veja1 not modelled 11.5 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 55 c2oniA_ not modelled 11.3 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4-like protein; PDBTitle: catalytic domain of the human nedd4-like e3 ligase 56 c3f0gA_ not modelled 11.1 9 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp 57 c3t69A_ not modelled 10.8 30 PDB header:transferase Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase; PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti 58 d1je3a_ not modelled 10.7 44 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 59 c3fiuD_ not modelled 10.7 18 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 60 d1zbpa1 not modelled 10.7 33 Fold:ImpE-like Superfamily:ImpE-like Family:ImpE-like 61 d1k3xa2 not modelled 10.4 17 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 62 c2aaoA_ not modelled 10.2 20 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 63 d1c4za_ not modelled 10.2 25 Fold:Hect, E3 ligase catalytic domain Superfamily:Hect, E3 ligase catalytic domain Family:Hect, E3 ligase catalytic domain 64 d1iv3a_ not modelled 10.0 18 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 65 d1s6ja_ not modelled 9.8 17 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 66 d1b8la_ not modelled 9.8 23 Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin 67 d1atia2 not modelled 9.7 24 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 68 c2dnaA_ not modelled 9.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 69 c1zvdA_ not modelled 9.5 29 PDB header:ligase Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: regulation of smurf2 ubiquitin ligase activity by anchoring the e2 to2 the hect domain 70 c1npqA_ not modelled 9.2 21 PDB header:structural protein Chain: A: PDB Molecule:troponin c; PDBTitle: structure of a rhodamine-labeled n-domain troponin c mutant2 (ca2+ saturated) in complex with skeletal troponin i 115-3 131 71 c2b1uA_ not modelled 8.9 21 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 72 d2bnma1 not modelled 8.7 63 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 73 c3hz7A_ not modelled 8.7 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 74 c1bmxA_ not modelled 8.6 28 PDB header:viral protein Chain: A: PDB Molecule:human immunodeficiency virus type 1 capsid; PDBTitle: hiv-1 capsid protein major homology region peptide analog,2 nmr, 8 structures 75 d1sl8a_ not modelled 8.6 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 76 c1yfnG_ not modelled 8.6 57 PDB header:protein binding Chain: G: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: versatile modes of peptide recognition by the aaa+ adaptor2 protein sspb- the crystal structure of a sspb-rsea complex 77 d1lmb3_ not modelled 8.5 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 78 d1jvaa2 not modelled 8.5 21 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 79 c2novD_ not modelled 7.9 24 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 80 c2hnkC_ not modelled 7.7 7 PDB header:transferase Chain: C: PDB Molecule:sam-dependent o-methyltransferase; PDBTitle: crystal structure of sam-dependent o-methyltransferase from2 pathogenic bacterium leptospira interrogans 81 c2kp7A_ not modelled 7.7 16 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 82 d2fxta1 not modelled 7.6 11 Fold:Cystatin-like Superfamily:NTF2-like Family:TIM44-like 83 c3oaaO_ not modelled 7.6 28 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 84 d1fs0g_ not modelled 7.5 28 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 85 d1fmta2 not modelled 7.4 18 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 86 c3b85A_ not modelled 7.4 20 PDB header:hydrolase Chain: A: PDB Molecule:phosphate starvation-inducible protein; PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum 87 d1jfja_ not modelled 7.4 23 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 88 c2ev5B_ not modelled 7.3 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium 89 d2j0sc1 not modelled 7.1 14 Fold:Mago nashi protein Superfamily:Mago nashi protein Family:Mago nashi protein 90 c2kvvA_ not modelled 7.1 14 PDB header:hydrolase Chain: A: PDB Molecule:putative excisionase; PDBTitle: solution nmr of putative excisionase from klebsiella pneumoniae,2 northeast structural genomics consortium target target kpr49 91 c1fmtA_ not modelled 7.1 18 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 92 d2gxba1 not modelled 7.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 93 d1sw8a_ not modelled 7.0 17 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 94 d1pprm1 not modelled 6.9 19 Fold:Peridinin-chlorophyll protein Superfamily:Peridinin-chlorophyll protein Family:Peridinin-chlorophyll protein 95 c3i3lA_ not modelled 6.9 29 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 96 d1rk8b_ not modelled 6.8 14 Fold:Mago nashi protein Superfamily:Mago nashi protein Family:Mago nashi protein 97 d1sl7a_ not modelled 6.8 10 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 98 d1v97a1 not modelled 6.8 22 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 99 c2d3kA_ not modelled 6.7 25 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0