Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AC35
DateThu Jan 5 11:17:05 GMT 2012
Unique Job ID671480c876c1a4e7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2isba1
Top template information
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
Confidence and coverage
Confidence:100.0% Coverage: 87%
174 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAG
Secondary structure 
























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Disorder  ???
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   .........70.........80.........90.........100.........110.........120
Sequence  PIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALH
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SS confidence 



























































Disorder 




???



















































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   .........130.........140.........150.........160.........170.........180
Sequence  VIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNLIAENKK
Secondary structure 

















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   .........190.........200.
Sequence  LFAERRDPIVEEICEHVHYIK
Secondary structure 




SS confidence 




















Disorder 














??????
Disorder confidence 




















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2isb chain A domain 1

3D model

Region: 1 - 176
Aligned: 174
Modelled: 175
Confidence: 100.0%
Identity: 38%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: FumA C-terminal domain-like
Family: FumA C-terminal domain-like

Phyre2

PDB 4a1o chain B

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 66.5%
Identity: 26%
PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.

Phyre2

PDB 1zcz chain A

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 65.9%
Identity: 26%
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of phosphoribosylaminoimidazolecarboxamide2 formyltransferase / imp cyclohydrolase (tm1249) from thermotoga3 maritima at 1.88 a resolution

Phyre2

PDB 1zcz chain A domain 2

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 64.6%
Identity: 26%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC

Phyre2

PDB 1ed7 chain A

3D model

Region: 18 - 33
Aligned: 16
Modelled: 16
Confidence: 48.5%
Identity: 19%
Fold: WW domain-like
Superfamily: Carbohydrate binding domain
Family: Carbohydrate binding domain

Phyre2

PDB 1g8m chain A domain 2

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 43.8%
Identity: 17%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC

Phyre2

PDB 1pkx chain A domain 2

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 42.6%
Identity: 14%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC

Phyre2

PDB 1o6a chain A

3D model

Region: 6 - 59
Aligned: 40
Modelled: 40
Confidence: 41.4%
Identity: 25%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2

PDB 1thz chain A

3D model

Region: 89 - 123
Aligned: 35
Modelled: 35
Confidence: 39.1%
Identity: 17%
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening

Phyre2

PDB 1g8f chain A domain 1

3D model

Region: 1 - 26
Aligned: 26
Modelled: 26
Confidence: 35.3%
Identity: 15%
Fold: PUA domain-like
Superfamily: PUA domain-like
Family: ATP sulfurylase N-terminal domain

Phyre2

PDB 3jvi chain A

3D model

Region: 67 - 196
Aligned: 118
Modelled: 128
Confidence: 31.7%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica

Phyre2

PDB 1z5y chain E domain 1

3D model

Region: 157 - 196
Aligned: 39
Modelled: 40
Confidence: 31.3%
Identity: 23%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Glutathione peroxidase-like

Phyre2

PDB 1x6v chain A domain 1

3D model

Region: 1 - 26
Aligned: 26
Modelled: 26
Confidence: 29.4%
Identity: 12%
Fold: PUA domain-like
Superfamily: PUA domain-like
Family: ATP sulfurylase N-terminal domain

Phyre2

PDB 3opy chain E

3D model

Region: 107 - 174
Aligned: 60
Modelled: 68
Confidence: 29.4%
Identity: 17%
PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state

Phyre2

PDB 3ibg chain F

3D model

Region: 83 - 112
Aligned: 30
Modelled: 30
Confidence: 28.3%
Identity: 33%
PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp

Phyre2

PDB 1vkz chain A domain 2

3D model

Region: 98 - 128
Aligned: 31
Modelled: 31
Confidence: 26.9%
Identity: 16%
Fold: PreATP-grasp domain
Superfamily: PreATP-grasp domain
Family: BC N-terminal domain-like

Phyre2

PDB 3p9z chain A

3D model

Region: 68 - 117
Aligned: 42
Modelled: 50
Confidence: 26.6%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd);
PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695

Phyre2

PDB 1e32 chain A domain 1

3D model

Region: 9 - 28
Aligned: 20
Modelled: 20
Confidence: 26.0%
Identity: 20%
Fold: Double psi beta-barrel
Superfamily: ADC-like
Family: Cdc48 N-terminal domain-like

Phyre2

PDB 1jo0 chain A

3D model

Region: 78 - 116
Aligned: 39
Modelled: 39
Confidence: 24.6%
Identity: 13%
Fold: IF3-like
Superfamily: YhbY-like
Family: YhbY-like

Phyre2

PDB 1aiw chain A

3D model

Region: 20 - 33
Aligned: 14
Modelled: 14
Confidence: 24.6%
Identity: 36%
Fold: WW domain-like
Superfamily: Carbohydrate binding domain
Family: Carbohydrate binding domain

Phyre2
1

d2isba1
2

c4a1oB_
3

c1zczA_
4

d1zcza2
5

d1ed7a_
6

d1g8ma2
7

d1pkxa2
8

d1o6aa_
9

c1thzA_
10

d1g8fa1
11

c3jviA_
12

d1z5ye1
13

d1x6va1
14

c3opyE_
15

c3ibgF_
16

d1vkza2
17

c3p9zA_
18

d1e32a1
19

d1jo0a_
20

d1aiwa_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2isba1



100.0 38 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
2c4a1oB_



66.5 26 PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
3c1zczA_



65.9 26 PDB header:transferase/hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of phosphoribosylaminoimidazolecarboxamide2 formyltransferase / imp cyclohydrolase (tm1249) from thermotoga3 maritima at 1.88 a resolution
4d1zcza2



64.6 26 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
5d1ed7a_



48.5 19 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
6d1g8ma2



43.8 17 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
7d1pkxa2



42.6 14 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
8d1o6aa_



41.4 25 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
9c1thzA_



39.1 17 PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening
10d1g8fa1



35.3 15 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
11c3jviA_



31.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
12d1z5ye1



31.3 23 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
13d1x6va1



29.4 12 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
14c3opyE_



29.4 17 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
15c3ibgF_



28.3 33 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
16d1vkza2



26.9 16 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
17c3p9zA_



26.6 17 PDB header:ligase
Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd);
PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695
18d1e32a1



26.0 20 Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
19d1jo0a_



24.6 13 Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
20d1aiwa_



24.6 36 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
21d12asa_



not modelled 24.1 8 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
22d1xnea_



not modelled 22.8 27 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
23d1o9ya_



not modelled 22.7 10 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
24c2d49A_



not modelled 22.5 21 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c
25c1r6xA_



not modelled 22.3 15 PDB header:transferase
Chain: A: PDB Molecule:atp:sulfate adenylyltransferase;
PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate
26c2qjfB_



not modelled 21.2 12 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-
PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1
27d1goia1



not modelled 21.2 14 Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
28d1s04a_



not modelled 20.8 31 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
29c1g8gB_



not modelled 20.5 15 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps
30c1jr2A_



not modelled 19.7 20 PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
31d1jr2a_



not modelled 19.7 20 Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
32d2cp6a1



not modelled 19.3 21 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
33c2gksB_



not modelled 19.3 23 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
34c2zpmA_



not modelled 18.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:regulator of sigma e protease;
PDBTitle: crystal structure analysis of pdz domain b
35c3stbC_



not modelled 18.2 33 PDB header:rna binding protein/immune system
Chain: C: PDB Molecule:rna-editing complex protein mp42;
PDBTitle: a complex of two editosome proteins and two nanobodies
36d2cpga_



not modelled 18.0 35 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
37d2dexx3



not modelled 18.0 34 Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
38d1tova_



not modelled 17.9 26 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
39c3kh7A_



not modelled 15.6 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe;
PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa
40c3kojA_



not modelled 15.3 43 PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ycf41;
PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a.
41d1a3xa1



not modelled 14.6 32 Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
42c3opyG_



not modelled 13.9 17 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
43c3en2A_



not modelled 13.6 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable primosomal replication protein n;
PDBTitle: three-dimensional structure of the protein prib from2 ralstonia solanacearum at the resolution 2.3a. northeast3 structural genomics consortium target rsr213c.
44c3kw0D_



not modelled 13.5 29 PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
45d1dcsa_



not modelled 13.4 3 Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Penicillin synthase-like
46d1xr4a2



not modelled 12.6 18 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
47c2r47C_



not modelled 12.5 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein mth_862;
PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus
48d1nq3a_



not modelled 12.4 31 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
49c2jwlB_



not modelled 12.1 27 PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
50d1b8aa1



not modelled 12.1 13 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
51c2l57A_



not modelled 11.7 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens
52d1j7ha_



not modelled 11.7 21 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
53c2de0X_



not modelled 11.5 29 PDB header:transferase
Chain: X: PDB Molecule:alpha-(1,6)-fucosyltransferase;
PDBTitle: crystal structure of human alpha 1,6-fucosyltransferase, fut8
54c2pseA_



not modelled 11.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:renilla-luciferin 2-monooxygenase;
PDBTitle: crystal structures of the luciferase and green fluorescent2 protein from renilla reniformis
55c3cr8C_



not modelled 10.6 23 PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
56c3iuwA_



not modelled 10.5 21 PDB header:rna binding protein
Chain: A: PDB Molecule:activating signal cointegrator;
PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution
57c3lzkC_



not modelled 10.4 14 PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
58d1y1la_



not modelled 10.1 17 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
59d2grea1



not modelled 10.1 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
60d2gqba1



not modelled 10.1 11 Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like
61c2p4sA_



not modelled 10.0 14 PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh
62c1xnjB_



not modelled 9.9 12 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
63c3qd7X_



not modelled 9.9 19 PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein ydal;
PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli
64c2hc8A_



not modelled 9.8 21 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
65c3k81D_



not modelled 9.8 26 PDB header:immune system, rna binding protein
Chain: D: PDB Molecule:mp18 rna editing complex protein;
PDBTitle: structure of the central interaction protein from the trypanosoma2 brucei editosome in complex with single domain antibodies
66d1krta_



not modelled 9.7 26 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
67c3e7kF_



not modelled 9.7 33 PDB header:membrane protein
Chain: F: PDB Molecule:trpm7 channel;
PDBTitle: crystal structure of an antiparallel coiled-coil tetramerization2 domain from trpm7 channels
68c2e4hA_



not modelled 9.5 26 PDB header:structural protein
Chain: A: PDB Molecule:restin;
PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail
69c2re2A_



not modelled 9.4 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein ta1041;
PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution
70c2fekA_



not modelled 9.4 12 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
71d1bbua1



not modelled 9.2 25 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
72d1ln4a_



not modelled 9.2 8 Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
73d1p9ka_



not modelled 9.1 24 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
74d1jf8a_



not modelled 9.1 17 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
75c2ju5A_



not modelled 9.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin disulfide isomerase;
PDBTitle: dsbh oxidoreductase
76c3k3sG_



not modelled 9.0 29 PDB header:hydrolase
Chain: G: PDB Molecule:altronate hydrolase;
PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.
77d1bkba1



not modelled 8.9 13 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
78d1pjqa3



not modelled 8.8 21 Fold:Siroheme synthase middle domains-like
Superfamily:Siroheme synthase middle domains-like
Family:Siroheme synthase middle domains-like
79c3fk8A_



not modelled 8.8 21 PDB header:isomerase
Chain: A: PDB Molecule:disulphide isomerase;
PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1
80d5pnta_



not modelled 8.8 11 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
81d1ueba1



not modelled 8.7 29 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
82c2l18A_



not modelled 8.7 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: an arsenate reductase in the phosphate binding state
83d2ewca1



not modelled 8.7 33 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
84c2vw9B_



not modelled 8.7 19 PDB header:dna-binding protein
Chain: B: PDB Molecule:single-stranded dna binding protein;
PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori
85c3fhwB_



not modelled 8.6 29 PDB header:dna binding protein
Chain: B: PDB Molecule:primosomal replication protein n;
PDBTitle: crystal structure of the protein prib from bordetella parapertussis.2 northeast structural genomics consortium target bpr162.
86d1nvta1



not modelled 8.6 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
87c1y96D_



not modelled 8.6 35 PDB header:rna binding protein
Chain: D: PDB Molecule:gem-associated protein 7;
PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
88d1qaha_



not modelled 8.4 24 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
89c3fw2A_



not modelled 8.4 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol-disulfide oxidoreductase;
PDBTitle: c-terminal domain of putative thiol-disulfide oxidoreductase from2 bacteroides thetaiotaomicron.
90d1rq8a_



not modelled 8.3 14 Fold:IF3-like
Superfamily:YhbY-like
Family:YhbY-like
91d2eifa1



not modelled 8.2 19 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
92d1onia_



not modelled 8.1 21 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
93d1fdra1



not modelled 8.0 19 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
94c3tqyA_



not modelled 7.9 33 PDB header:transferase
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii
95d1pk6a_



not modelled 7.9 20 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
96c1o91B_



not modelled 7.7 40 PDB header:collagen
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
97d1o91a_



not modelled 7.7 40 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
98d1gsoa2



not modelled 7.7 19 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
99d1iz6a1



not modelled 7.6 13 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0