Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	V	Q	H	L	K	R	R	P	L	S	R	Y	L	K	D	F	K	H	S	Q	T	H	C	A	H	C	R	K	L	L	D	R	I	T	L	V	R	D	G	K	I	V	N	K	I	E	I	S	R	L	D	T	L	L	D	E	N	G
Secondary structure
SS confidence
Disorder		?	?	?					?																	?		?	?																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	Q	T	E	Q	K	S	W	A	A	L	C	R	F	C	G	D	L	H	C	K	T	Q	S	D	F	F	D	I	I	G	F	K	Q	F	L	F	E	Q	T	E	M	S	P	G	T	V	R	E	Y	V	V	R	L	R	R	L	G	N	H
Secondary structure
SS confidence
Disorder																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	H	E	Q	N	I	S	L	D	Q	L	Q	D	G	F	L	D	E	I	L	A	P	W	L	P	T	T	S	T	N	N	Y	R	I	A	L	R	K	Y	Q	H	Y	Q	R	Q	T	C	T	R	L	V	Q	K	S	S	S	L	P	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?																																																	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.
Sequence		D	I	Y
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1a0p chain A domain 1 Region: 89 - 162 Aligned: 71 Modelled: 74 Confidence: 92.5% Identity: 23% Fold: SAM domain-like Superfamily: lambda integrase-like, N-terminal domain Family: lambda integrase-like, N-terminal domain Phyre2 PDB 1a0p chain A Region: 89 - 162 Aligned: 71 Modelled: 74 Confidence: 89.3% Identity: 24% PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Phyre2 PDB 1crx chain A Region: 89 - 162 Aligned: 74 Modelled: 74 Confidence: 84.9% Identity: 12% PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Phyre2 PDB 3lys chain C Region: 84 - 158 Aligned: 70 Modelled: 75 Confidence: 79.2% Identity: 19% PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f Phyre2 PDB 2key chain A Region: 46 - 117 Aligned: 71 Modelled: 72 Confidence: 77.7% Identity: 6% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c Phyre2 PDB 1ma7 chain A Region: 89 - 159 Aligned: 71 Modelled: 71 Confidence: 77.4% Identity: 11% PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Phyre2 PDB 2oxo chain A Region: 92 - 158 Aligned: 65 Modelled: 67 Confidence: 73.5% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase Phyre2 PDB 1f44 chain A domain 1 Region: 58 - 139 Aligned: 81 Modelled: 82 Confidence: 72.1% Identity: 14% Fold: SAM domain-like Superfamily: lambda integrase-like, N-terminal domain Family: lambda integrase-like, N-terminal domain Phyre2 PDB 2khq chain A Region: 86 - 158 Aligned: 71 Modelled: 73 Confidence: 71.0% Identity: 14% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b Phyre2 PDB 3nrw chain A Region: 91 - 162 Aligned: 72 Modelled: 72 Confidence: 63.9% Identity: 15% PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a Phyre2 PDB 3axt chain A Region: 24 - 96 Aligned: 70 Modelled: 73 Confidence: 46.7% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine Phyre2 PDB 2dul chain A domain 1 Region: 25 - 110 Aligned: 82 Modelled: 86 Confidence: 39.9% Identity: 10% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: TRM1-like Phyre2 PDB 2kkp chain A Region: 120 - 159 Aligned: 40 Modelled: 40 Confidence: 39.1% Identity: 20% PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). Phyre2 PDB 1m4z chain A Region: 71 - 114 Aligned: 40 Modelled: 44 Confidence: 38.9% Identity: 20% Fold: SH3-like barrel Superfamily: BAH domain Family: BAH domain Phyre2 PDB 2fvu chain A Region: 71 - 114 Aligned: 40 Modelled: 44 Confidence: 34.3% Identity: 28% PDB header:transcription Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: structure of the yeast sir3 bah domain Phyre2 PDB 2kiw chain A Region: 92 - 158 Aligned: 65 Modelled: 67 Confidence: 31.4% Identity: 5% PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). Phyre2 PDB 1jgt chain A domain 2 Region: 33 - 51 Aligned: 19 Modelled: 19 Confidence: 30.3% Identity: 32% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 2kkv chain A Region: 92 - 157 Aligned: 63 Modelled: 66 Confidence: 29.9% Identity: 14% PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h Phyre2 PDB 1pby chain A Region: 22 - 55 Aligned: 34 Modelled: 34 Confidence: 28.6% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution Phyre2 PDB 1jmx chain A Region: 22 - 55 Aligned: 34 Modelled: 34 Confidence: 25.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida Phyre2 1 d1a0pa1 2 c1a0pA_ 3 c1crxA_ 4 c3lysC_ 5 c2keyA_ 6 c1ma7A_ 7 c2oxoA_ 8 d1f44a1 9 c2khqA_ 10 c3nrwA_ 11 c3axtA_ 12 d2dula1 13 c2kkpA_ 14 d1m4za_ 15 c2fvuA_ 16 c2kiwA_ 17 d1jgta2 18 c2kkvA_ 19 c1pbyA_ 20 c1jmxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1a0pa1 92.5 23 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 2 c1a0pA_ 89.3 24 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 3 c1crxA_ 84.9 12 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 4 c3lysC_ 79.2 19 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 5 c2keyA_ 77.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c 6 c1ma7A_ 77.4 11 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 7 c2oxoA_ 73.5 12 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 8 d1f44a1 72.1 14 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 9 c2khqA_ 71.0 14 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 10 c3nrwA_ 63.9 15 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 11 c3axtA_ 46.7 17 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 12 d2dula1 39.9 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 13 c2kkpA_ 39.1 20 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 14 d1m4za_ 38.9 20 Fold:SH3-like barrel Superfamily:BAH domain Family:BAH domain 15 c2fvuA_ 34.3 28 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: structure of the yeast sir3 bah domain 16 c2kiwA_ 31.4 5 PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). 17 d1jgta2 30.3 32 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 18 c2kkvA_ 29.9 14 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 19 c1pbyA_ 28.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 20 c1jmxA_ 25.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 21 d1k3ka_ not modelled 24.6 17 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 22 d2cora1 not modelled 23.3 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 23 d2dara1 not modelled 21.5 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 c1m1zB_ not modelled 21.3 30 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 25 c2kd1A_ not modelled 19.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 26 d2c9wa1 not modelled 17.3 44 Fold:SOCS box-like Superfamily:SOCS box-like Family:SOCS box-like 27 c2p7vA_ not modelled 16.6 15 PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 28 d2ct1a1 not modelled 13.2 31 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 29 c1x6aA_ not modelled 13.0 18 PDB header:protein binding Chain: A: PDB Molecule:lim domain kinase 2; PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2) 30 c1l6nA_ not modelled 12.4 18 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein 31 c2l76A_ not modelled 11.7 15 PDB header:transcription Chain: A: PDB Molecule:nfatc2-interacting protein; PDBTitle: solution nmr structure of human nfatc2ip ubiquitin-like domain,2 nfatc2ip_244_338, nesg target ht65a/ocsp target hs00387_244_338/sgc-3 toronto 32 c2a3vA_ not modelled 11.6 14 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 33 d2fk4a1 not modelled 11.4 22 Fold:E6 C-terminal domain-like Superfamily:E6 C-terminal domain-like Family:E6 C-terminal domain-like 34 d1p7da_ not modelled 11.2 8 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 35 d2ctda2 not modelled 10.7 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 36 c2corA_ not modelled 10.7 30 PDB header:structural protein Chain: A: PDB Molecule:pinch protein; PDBTitle: solution structure of the third lim domain of particularly2 interesting new cys-his protein 37 d1b8ta4 not modelled 10.4 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 d2yt9a1 not modelled 9.9 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 39 d1ct9a2 not modelled 9.2 22 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 40 c2dj7A_ not modelled 9.1 25 PDB header:metal binding protein Chain: A: PDB Molecule:actin-binding lim protein 3; PDBTitle: solution structure of 3rd lim domain of actin-binding lim2 protein 3 41 d1ubdc2 not modelled 8.8 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 42 c1ct9D_ not modelled 8.7 22 PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli 43 c2jhdA_ not modelled 8.6 26 PDB header:cell adhesion Chain: A: PDB Molecule:micronemal protein 1; PDBTitle: crystal structure of toxoplasma gondii micronemal protein 12 bound to 3'-sialyl-n-acetyllactosamine 44 c3h3pT_ not modelled 8.6 46 PDB header:immune system Chain: T: PDB Molecule:4e10_s0_1tjlc_004_n; PDBTitle: crystal structure of hiv epitope-scaffold 4e10 fv complex 45 c1x31D_ not modelled 8.5 13 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 46 d1vqoq1 not modelled 8.4 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 47 d1k5oa_ not modelled 8.2 14 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 48 c3rxyA_ not modelled 8.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nif3 protein; PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus 49 c3dr0B_ not modelled 8.1 38 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002 50 d1wh7a_ not modelled 7.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 51 d2dasa1 not modelled 7.9 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:TRASH domain 52 c2zkrq_ not modelled 7.7 29 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 53 c1x4uA_ not modelled 7.6 31 PDB header:lipid binding protein Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b; PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein 54 d1chma1 not modelled 7.5 42 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 55 c3q8dB_ not modelled 7.3 45 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus 56 d2izva1 not modelled 7.2 33 Fold:SOCS box-like Superfamily:SOCS box-like Family:SOCS box-like 57 d1b8ta2 not modelled 7.1 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 58 c2zonG_ not modelled 7.1 25 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 59 c2l4dA_ not modelled 7.0 38 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 60 c2zshB_ not modelled 6.9 6 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 61 d1kv9a1 not modelled 6.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 62 c3cu4A_ not modelled 6.8 63 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 63 d2gc4d1 not modelled 6.8 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 d1cyja_ not modelled 6.8 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 c2dasA_ not modelled 6.8 50 PDB header:metal transport Chain: A: PDB Molecule:zinc finger mym-type protein 5; PDBTitle: solution structure of trash domain of zinc finger mym-type2 protein 5 66 d1wfpa_ not modelled 6.7 55 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 67 c1s6wA_ not modelled 6.6 80 PDB header:antibiotic Chain: A: PDB Molecule:hepcidin; PDBTitle: solution structure of hybrid white striped bass hepcidin 68 d1dy7b1 not modelled 6.5 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 69 d1h9xa1 not modelled 6.5 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 70 c2cuqA_ not modelled 6.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2 71 c1q15A_ not modelled 6.5 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase 72 d1q15a2 not modelled 6.5 14 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 73 c2v07A_ not modelled 6.5 25 PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant 74 c3rf1B_ not modelled 6.3 30 PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168 75 c2eluA_ not modelled 6.3 36 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406 76 d1sqna_ not modelled 6.1 12 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 77 d2c8sa1 not modelled 6.1 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 78 d2a1ja1 not modelled 6.1 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 79 d1j3sa_ not modelled 6.0 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 c2cqjA_ not modelled 6.0 31 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 81 d1wffa_ not modelled 6.0 45 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 82 d1xffa_ not modelled 5.9 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 83 c3h5gB_ not modelled 5.8 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 84 c3h5fB_ not modelled 5.8 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 85 c3h5gC_ not modelled 5.8 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 86 c3h5gA_ not modelled 5.8 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 87 c3h5fA_ not modelled 5.8 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 88 c3h5fC_ not modelled 5.8 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 89 c3k35D_ not modelled 5.8 21 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 90 d1cc5a_ not modelled 5.8 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 c2x6pA_ not modelled 5.7 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 92 c2x6pB_ not modelled 5.7 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 93 c2x6pC_ not modelled 5.7 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 94 d1j2na_ not modelled 5.7 14 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 95 d1c6ra_ not modelled 5.7 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 96 c1jxaA_ not modelled 5.6 24 PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate 97 d1c6sa_ not modelled 5.6 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 98 d1f1fa_ not modelled 5.6 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 99 c1x4lA_ not modelled 5.4 30 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0