Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	C	E	L	L	G	M	S	A	N	V	P	T	D	I	C	F	S	F	T	G	L	V	Q	R	G	G	G	T	G	P	H	K	D	G	W	G	I	T	F	Y	E	G	K	G	C	R	T	F	K	D	P	Q	P	S	F	N	S	P	I
Secondary structure
SS confidence
Disorder		?	?																							?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	K	L	V	Q	D	Y	P	I	K	S	C	S	V	V	A	H	I	R	Q	A	N	R	G	E	V	A	L	E	N	T	H	P	F	T	R	E	L	W	G	R	N	W	T	Y	A	H	N	G	Q	L	T	G	Y	K	S	L	E	T	G
Secondary structure
SS confidence
Disorder						?	?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	F	R	P	V	G	E	T	D	S	E	K	A	F	C	W	L	L	H	K	L	T	Q	R	Y	P	R	T	P	G	N	M	A	A	V	F	K	Y	I	A	S	L	A	D	E	L	R	Q	K	G	V	F	N	M	L	L	S	D	G	R
Secondary structure
SS confidence
Disorder				?	?																						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	V	M	A	Y	C	S	T	N	L	H	W	I	T	R	R	A	P	F	G	V	A	T	L	L	D	Q	D	V	E	I	D	F	S	S	Q	T	T	P	N	D	V	V	T	V	I	A	T	Q	P	L	T	G	N	E	T	W	Q	K	I
Secondary structure
SS confidence
Disorder																																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence		M	P	G	E	W	R	L	F	C	L	G	E	R	V	V
Secondary structure
SS confidence
Disorder												?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1te5 chain A Region: 2 - 254 Aligned: 251 Modelled: 253 Confidence: 100.0% Identity: 60% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 3mdn chain D Region: 2 - 253 Aligned: 201 Modelled: 218 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein; PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi Phyre2 PDB 1ecf chain A domain 2 Region: 2 - 255 Aligned: 228 Modelled: 248 Confidence: 100.0% Identity: 22% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1ecj chain B Region: 2 - 253 Aligned: 225 Modelled: 252 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer Phyre2 PDB 1gph chain 1 domain 2 Region: 2 - 255 Aligned: 213 Modelled: 231 Confidence: 100.0% Identity: 20% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1gph chain 1 Region: 2 - 253 Aligned: 211 Modelled: 229 Confidence: 100.0% Identity: 21% PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis Phyre2 PDB 1xff chain A Region: 2 - 255 Aligned: 210 Modelled: 230 Confidence: 100.0% Identity: 21% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1jxa chain A Region: 2 - 255 Aligned: 210 Modelled: 222 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate Phyre2 PDB 1ct9 chain D Region: 2 - 253 Aligned: 181 Modelled: 185 Confidence: 99.9% Identity: 17% PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli Phyre2 PDB 1ofd chain A domain 3 Region: 47 - 254 Aligned: 180 Modelled: 188 Confidence: 99.9% Identity: 18% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1ct9 chain A domain 2 Region: 3 - 253 Aligned: 180 Modelled: 184 Confidence: 99.8% Identity: 16% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1ea0 chain A domain 3 Region: 38 - 254 Aligned: 195 Modelled: 191 Confidence: 99.8% Identity: 17% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1jgt chain A domain 2 Region: 30 - 255 Aligned: 174 Modelled: 185 Confidence: 99.7% Identity: 17% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 1m1z chain B Region: 70 - 252 Aligned: 135 Modelled: 142 Confidence: 99.6% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme Phyre2 PDB 2vdc chain F Region: 48 - 254 Aligned: 177 Modelled: 187 Confidence: 99.5% Identity: 21% PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Phyre2 PDB 1lm1 chain A Region: 48 - 254 Aligned: 178 Modelled: 187 Confidence: 99.5% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme Phyre2 PDB 1q15 chain A Region: 43 - 252 Aligned: 169 Modelled: 180 Confidence: 99.4% Identity: 15% PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase Phyre2 PDB 1q15 chain A domain 2 Region: 73 - 249 Aligned: 155 Modelled: 163 Confidence: 99.3% Identity: 14% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Class II glutamine amidotransferases Phyre2 PDB 2rpr chain A Region: 84 - 113 Aligned: 30 Modelled: 30 Confidence: 33.4% Identity: 13% PDB header:metal binding protein Chain: A: PDB Molecule:flywch-type zinc finger-containing protein 1; PDBTitle: solution structure of the fifth flywch domain of flywch-type2 zinc finger-containing protein 1 Phyre2 PDB 2oqb chain A Region: 32 - 50 Aligned: 19 Modelled: 19 Confidence: 26.4% Identity: 32% PDB header:transferase,gene regulation Chain: A: PDB Molecule:histone-arginine methyltransferase carm1; PDBTitle: crystal structure of the n-terminal domain of coactivator-associated2 methyltransferase 1 (carm1) Phyre2 1 d1te5a_ 2 c3mdnD_ 3 d1ecfa2 4 c1ecjB_ 5 d1gph12 6 c1gph1_ 7 d1xffa_ 8 c1jxaA_ 9 c1ct9D_ 10 d1ofda3 11 d1ct9a2 12 d1ea0a3 13 d1jgta2 14 c1m1zB_ 15 c2vdcF_ 16 c1lm1A_ 17 c1q15A_ 18 d1q15a2 19 c2rprA_ 20 c2oqbA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1te5a_ 100.0 60 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 2 c3mdnD_ 100.0 21 PDB header:transferase Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein; PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi 3 d1ecfa2 100.0 22 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 4 c1ecjB_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 5 d1gph12 100.0 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 6 c1gph1_ 100.0 21 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 7 d1xffa_ 100.0 21 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 8 c1jxaA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate 9 c1ct9D_ 99.9 17 PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli 10 d1ofda3 99.9 18 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 11 d1ct9a2 99.8 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 12 d1ea0a3 99.8 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 13 d1jgta2 99.7 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 14 c1m1zB_ 99.6 16 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 15 c2vdcF_ 99.5 21 PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 16 c1lm1A_ 99.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme 17 c1q15A_ 99.4 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase 18 d1q15a2 99.3 14 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 19 c2rprA_ 33.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:flywch-type zinc finger-containing protein 1; PDBTitle: solution structure of the fifth flywch domain of flywch-type2 zinc finger-containing protein 1 20 c2oqbA_ 26.4 32 PDB header:transferase,gene regulation Chain: A: PDB Molecule:histone-arginine methyltransferase carm1; PDBTitle: crystal structure of the n-terminal domain of coactivator-associated2 methyltransferase 1 (carm1) 21 c2jraB_ not modelled 17.6 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein rpa2121; PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6 22 d2ot2a1 not modelled 15.5 19 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 23 c3pubA_ not modelled 14.1 22 PDB header:unknown function Chain: A: PDB Molecule:30kda protein; PDBTitle: crystal structure of the bombyx mori low molecular weight lipoprotein2 7 (bmlp7) 24 c2je2A_ not modelled 13.3 5 PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form 25 d2gu2a1 not modelled 11.8 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:AstE/AspA-like 26 d1qvpa_ not modelled 11.2 33 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 27 c3nh8A_ not modelled 11.0 29 PDB header:hydrolase Chain: A: PDB Molecule:aspartoacylase-2; PDBTitle: crystal structure of murine aminoacylase 3 in complex with n-acetyl-s-2 1,2-dichlorovinyl-l-cysteine 28 c3mlhA_ not modelled 10.8 35 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain 29 d2i3ca1 not modelled 10.8 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:AstE/AspA-like 30 d1t0ga_ not modelled 10.8 13 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Steroid-binding domain 31 c1y8aA_ not modelled 10.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1437; PDBTitle: structure of gene product af1437 from archaeoglobus fulgidus 32 d2z1ca1 not modelled 10.1 27 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 33 d2visc_ not modelled 9.9 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 34 c2hc8A_ not modelled 9.3 17 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 35 c3hshA_ not modelled 8.7 13 PDB header:protein binding Chain: A: PDB Molecule:collagen alpha-1(xviii) chain; PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form) 36 c3bbo1_ not modelled 8.5 25 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein l31; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 37 c3d3rA_ not modelled 8.3 22 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 38 d3d3ra1 not modelled 8.1 20 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 39 d1rvxa_ not modelled 7.1 25 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 40 d2viua_ not modelled 7.1 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 41 d1mqma_ not modelled 6.9 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 42 d1mjta_ not modelled 6.8 14 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain 43 c3eykA_ not modelled 6.8 25 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha1 chain; PDBTitle: structure of influenza haemagglutinin in complex with an2 inhibitor of membrane fusion 44 c2aukA_ not modelled 6.8 31 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert 45 c2j034_ not modelled 6.7 43 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii. 46 d2j0141 not modelled 6.7 43 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 47 d1jsda_ not modelled 6.7 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 48 d1rv0h_ not modelled 6.6 30 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 49 d1rd8a_ not modelled 6.5 25 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 50 c3qqiB_ not modelled 6.4 15 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the ha1 receptor binding domain of h22 hemagglutinin 51 d1xl7a2 not modelled 6.3 13 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 52 d1pj5a3 not modelled 6.2 21 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:L-aminoacid/polyamine oxidase 53 d2ibxa1 not modelled 6.1 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 54 d1jsma_ not modelled 6.0 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 55 d1t1ua2 not modelled 6.0 19 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 56 c2q82A_ not modelled 6.0 30 PDB header:structural protein Chain: A: PDB Molecule:core protein p7; PDBTitle: crystal structure of core protein p7 from pseudomonas phage2 phi12. northeast structural genomics target oc1 57 d1soxa2 not modelled 5.9 6 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 58 d3b55a1 not modelled 5.8 29 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 59 d1vs6z1 not modelled 5.7 43 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 60 d1ti8a1 not modelled 5.7 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 61 d1gmua1 not modelled 5.7 19 Fold:Urease metallochaperone UreE, N-terminal domain Superfamily:Urease metallochaperone UreE, N-terminal domain Family:Urease metallochaperone UreE, N-terminal domain 62 c2b664_ not modelled 5.6 43 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 63 d1nm8a2 not modelled 5.6 17 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 64 c2radB_ not modelled 5.6 29 PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 65 c2a45L_ not modelled 5.6 13 PDB header:hydrolase/hydrolase inhibitor Chain: L: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 66 c2rfuA_ not modelled 5.6 10 PDB header:viral protein Chain: A: PDB Molecule:influenza b hemagglutinin (ha); PDBTitle: crystal structure of influenza b virus hemagglutinin in complex with2 lstc receptor analog 67 c2kijA_ not modelled 5.5 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 68 c1nh1A_ not modelled 5.3 23 PDB header:avirulence protein Chain: A: PDB Molecule:avirulence b protein; PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae. 69 d1nh1a_ not modelled 5.3 23 Fold:Antivirulence factor Superfamily:Antivirulence factor Family:Antivirulence factor 70 d1m7va_ not modelled 5.2 26 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain 71 d1ewqa3 not modelled 5.2 50 Fold:Ribonuclease H-like motif Superfamily:DNA repair protein MutS, domain II Family:DNA repair protein MutS, domain II 72 d1nosa_ not modelled 5.2 24 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0