Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	L	S	K	V	I	I	A	R	A	W	S	R	D	L	Y	Q	L	H	Q	G	L	W	H	L	F	P	N	R	P	D	A	A	R	D	F	L	F	H	V	E	K	R	N	T	P	E	G	C	H	V	L	L	Q	S	A	Q	M	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?																								?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	S	T	A	V	A	T	V	I	K	T	K	Q	V	E	F	Q	L	Q	V	G	V	P	L	Y	F	R	L	R	A	N	P	I	K	T	I	L	D	N	Q	K	R	L	D	S	K	G	N	I	K	R	C	R	V	P	L	I	K	E	A
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	Q	I	A	W	L	Q	R	K	L	G	N	A	A	R	V	E	D	V	H	P	I	S	E	R	P	Q	Y	F	S	G	D	G	K	S	G	K	I	Q	T	V	C	F	E	G	V	L	T	I	N	D	A	P	A	L	I	D	L	V	Q
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence		Q	G	I	G	P	A	K	S	M	G	C	G	L	L	S	L	A	P	L
Secondary structure
SS confidence
Disorder								?							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qrq chain A Region: 1 - 198 Aligned: 187 Modelled: 198 Confidence: 100.0% Identity: 34% PDB header:rna binding protein/rna Chain: A: PDB Molecule:putative uncharacterized protein tthb192; PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex Phyre2 PDB 1wj9 chain A Region: 1 - 198 Aligned: 177 Modelled: 178 Confidence: 100.0% Identity: 34% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:crispr-associated protein; PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus Phyre2 PDB 1wj9 chain A domain 2 Region: 77 - 198 Aligned: 101 Modelled: 102 Confidence: 100.0% Identity: 40% Fold: Ferredoxin-like Superfamily: CRISPR-associated protein Family: CRISPR-associated protein Phyre2 PDB 1wj9 chain A domain 1 Region: 1 - 76 Aligned: 76 Modelled: 76 Confidence: 99.9% Identity: 25% Fold: Ferredoxin-like Superfamily: CRISPR-associated protein Family: CRISPR-associated protein Phyre2 PDB 3i4h chain X Region: 119 - 197 Aligned: 76 Modelled: 79 Confidence: 92.6% Identity: 14% PDB header:hydrolase Chain: X: PDB Molecule:endoribonuclease; PDBTitle: crystal structure of cas6 in pyrococcus furiosus Phyre2 PDB 3ram chain C Region: 118 - 192 Aligned: 61 Modelled: 61 Confidence: 46.7% Identity: 15% PDB header:hydrolase Chain: C: PDB Molecule:hmra protein; PDBTitle: crystal structure of hmra Phyre2 PDB 1axi chain B domain 2 Region: 50 - 92 Aligned: 43 Modelled: 43 Confidence: 46.6% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: Fibronectin type III Family: Fibronectin type III Phyre2 PDB 1iar chain B domain 2 Region: 78 - 92 Aligned: 15 Modelled: 15 Confidence: 32.4% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: Fibronectin type III Family: Fibronectin type III Phyre2 PDB 2db8 chain A Region: 42 - 90 Aligned: 49 Modelled: 49 Confidence: 27.4% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 9, isoform 2; PDBTitle: solution structures of the fn3 domain of human tripartite2 motif protein 9 Phyre2 PDB 3uoe chain B Region: 170 - 194 Aligned: 25 Modelled: 25 Confidence: 25.9% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti Phyre2 PDB 1wtj chain B Region: 170 - 194 Aligned: 25 Modelled: 25 Confidence: 24.6% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato Phyre2 PDB 2q43 chain A Region: 118 - 192 Aligned: 72 Modelled: 75 Confidence: 23.3% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:iaa-amino acid hydrolase ilr1-like 2; PDBTitle: ensemble refinement of the protein crystal structure of iaa-aminoacid2 hydrolase from arabidopsis thaliana gene at5g56660 Phyre2 PDB 1nxu chain A Region: 170 - 194 Aligned: 25 Modelled: 21 Confidence: 22.1% Identity: 12% Fold: L-sulfolactate dehydrogenase-like Superfamily: L-sulfolactate dehydrogenase-like Family: L-sulfolactate dehydrogenase-like Phyre2 PDB 3mpc chain B Region: 37 - 90 Aligned: 54 Modelled: 54 Confidence: 22.0% Identity: 15% PDB header:unknown function Chain: B: PDB Molecule:fn3-like protein; PDBTitle: the crystal structure of a fn3-like protein from clostridium2 thermocellum Phyre2 PDB 1uc6 chain A Region: 50 - 91 Aligned: 42 Modelled: 42 Confidence: 20.1% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: Fibronectin type III Family: Fibronectin type III Phyre2 PDB 2h5x chain A Region: 165 - 190 Aligned: 26 Modelled: 26 Confidence: 19.6% Identity: 23% PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis Phyre2 PDB 2h1q chain A domain 1 Region: 161 - 198 Aligned: 38 Modelled: 38 Confidence: 18.5% Identity: 5% Fold: PLP-dependent transferase-like Superfamily: Dhaf3308-like Family: Dhaf3308-like Phyre2 PDB 1rfm chain A Region: 170 - 194 Aligned: 25 Modelled: 25 Confidence: 17.1% Identity: 20% Fold: L-sulfolactate dehydrogenase-like Superfamily: L-sulfolactate dehydrogenase-like Family: L-sulfolactate dehydrogenase-like Phyre2 PDB 1zlg chain A Region: 39 - 90 Aligned: 52 Modelled: 52 Confidence: 16.1% Identity: 13% PDB header:hormone/growth factor Chain: A: PDB Molecule:anosmin 1; PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1 Phyre2 PDB 1d8l chain A Region: 165 - 191 Aligned: 27 Modelled: 27 Confidence: 14.7% Identity: 19% PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii Phyre2 1 c3qrqA_ 2 c1wj9A_ 3 d1wj9a2 4 d1wj9a1 5 c3i4hX_ 6 c3ramC_ 7 d1axib2 8 d1iarb2 9 c2db8A_ 10 c3uoeB_ 11 c1wtjB_ 12 c2q43A_ 13 d1nxua_ 14 c3mpcB_ 15 d1uc6a_ 16 c2h5xA_ 17 d2h1qa1 18 d1rfma_ 19 c1zlgA_ 20 c1d8lA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qrqA_ 100.0 34 PDB header:rna binding protein/rna Chain: A: PDB Molecule:putative uncharacterized protein tthb192; PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex 2 c1wj9A_ 100.0 34 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:crispr-associated protein; PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus 3 d1wj9a2 100.0 40 Fold:Ferredoxin-like Superfamily:CRISPR-associated protein Family:CRISPR-associated protein 4 d1wj9a1 99.9 25 Fold:Ferredoxin-like Superfamily:CRISPR-associated protein Family:CRISPR-associated protein 5 c3i4hX_ 92.6 14 PDB header:hydrolase Chain: X: PDB Molecule:endoribonuclease; PDBTitle: crystal structure of cas6 in pyrococcus furiosus 6 c3ramC_ 46.7 15 PDB header:hydrolase Chain: C: PDB Molecule:hmra protein; PDBTitle: crystal structure of hmra 7 d1axib2 46.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 8 d1iarb2 32.4 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 9 c2db8A_ 27.4 14 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 9, isoform 2; PDBTitle: solution structures of the fn3 domain of human tripartite2 motif protein 9 10 c3uoeB_ 25.9 32 PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti 11 c1wtjB_ 24.6 16 PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato 12 c2q43A_ 23.3 13 PDB header:hydrolase Chain: A: PDB Molecule:iaa-amino acid hydrolase ilr1-like 2; PDBTitle: ensemble refinement of the protein crystal structure of iaa-aminoacid2 hydrolase from arabidopsis thaliana gene at5g56660 13 d1nxua_ 22.1 12 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 14 c3mpcB_ 22.0 15 PDB header:unknown function Chain: B: PDB Molecule:fn3-like protein; PDBTitle: the crystal structure of a fn3-like protein from clostridium2 thermocellum 15 d1uc6a_ 20.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 16 c2h5xA_ 19.6 23 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 17 d2h1qa1 18.5 5 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 18 d1rfma_ 17.1 20 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 19 c1zlgA_ 16.1 13 PDB header:hormone/growth factor Chain: A: PDB Molecule:anosmin 1; PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1 20 c1d8lA_ 14.7 19 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 21 c2b5iC_ not modelled 14.5 13 PDB header:cytokine/cytokine receptor Chain: C: PDB Molecule:cytokine receptor common gamma chain; PDBTitle: cytokine receptor complex 22 d1cd9b2 not modelled 13.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 23 c3bpoB_ not modelled 13.4 28 PDB header:cytokine/cytokine receptor Chain: B: PDB Molecule:interleukin-4 receptor alpha chain; PDBTitle: crystal structure of the il13-il4r-il13ra ternary complex 24 c3q3wB_ not modelled 13.1 29 PDB header:transferase Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni. 25 d1wfua_ not modelled 12.8 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 26 d1f6fb2 not modelled 12.6 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 27 c1hjpA_ not modelled 12.6 21 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 28 d2gysa4 not modelled 12.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 29 c3h5jA_ not modelled 12.3 29 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis 30 d2ic2a1 not modelled 12.1 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 31 c1ysjB_ not modelled 11.9 11 PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family 32 d1x5ya1 not modelled 11.6 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 33 d1qgpa_ not modelled 11.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 34 d2crza1 not modelled 10.5 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 35 c2hcuA_ not modelled 10.4 29 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans 36 d2d9qb2 not modelled 10.3 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 37 d3d48r2 not modelled 10.3 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 38 d1bvsa2 not modelled 10.2 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 39 d1v7la_ not modelled 10.0 43 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 40 d1x4xa1 not modelled 9.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 41 c3npgD_ not modelled 9.9 6 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 42 d1cuka2 not modelled 9.9 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 43 d1ltza_ not modelled 9.8 24 Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 44 d1x5ia1 not modelled 9.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 45 c3siiA_ not modelled 9.3 60 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase; PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata 46 d1v5ja_ not modelled 9.1 46 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 47 c1acyP_ not modelled 9.1 43 PDB header:complex(antibody/hiv-1 fragment) Chain: P: PDB Molecule:hiv-1 gp120 (mn isolate); PDBTitle: crystal structure of the principal neutralizing site of hiv-2 1 48 d2b5ic1 not modelled 9.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 49 d1phza2 not modelled 9.0 35 Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 50 d2haza1 not modelled 9.0 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 51 d2oo3a1 not modelled 9.0 50 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:LPG1296-like 52 c2pkpA_ not modelled 8.9 43 PDB header:lyase Chain: A: PDB Molecule:homoaconitase small subunit; PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271) 53 c3e2tA_ not modelled 8.7 35 PDB header:oxidoreductase Chain: A: PDB Molecule:tryptophan 5-hydroxylase 1; PDBTitle: the catalytic domain of chicken tryptophan hydroxylase 12 with bound tryptophan 54 d1mlwa_ not modelled 8.6 35 Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 55 c2eddA_ not modelled 8.5 14 PDB header:apoptosis Chain: A: PDB Molecule:netrin receptor dcc; PDBTitle: solution structure of the fifth fibronectin type iii domain2 of human netrin receptor dcc 56 d1j8ua_ not modelled 8.4 35 Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 57 c3ujiP_ not modelled 8.4 43 PDB header:immune system Chain: P: PDB Molecule:envelope glycoprotein gp160; PDBTitle: crystal structure of anti-hiv-1 v3 fab 2558 in complex with mn peptide 58 c3mlwQ_ not modelled 8.4 43 PDB header:immune system Chain: Q: PDB Molecule:hiv-1 gp120 third variable region (v3) crown; PDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide 59 c3mlwP_ not modelled 8.4 43 PDB header:immune system Chain: P: PDB Molecule:hiv-1 gp120 third variable region (v3) crown; PDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide 60 c2yuxA_ not modelled 8.4 38 PDB header:cell adhesion Chain: A: PDB Molecule:myosin-binding protein c, slow-type; PDBTitle: solution structure of 3rd fibronectin type three domain of2 slow type myosin-binding protein c 61 d1n7va_ not modelled 8.1 55 Fold:Adsorption protein p2 Superfamily:Adsorption protein p2 Family:Adsorption protein p2 62 d1ryqa_ not modelled 8.0 10 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 63 d1toha_ not modelled 7.9 41 Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 64 d1ixra1 not modelled 7.8 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 65 d1wfta_ not modelled 7.8 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 66 c3lpeF_ not modelled 7.7 13 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 67 c2v27A_ not modelled 7.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:phenylalanine hydroxylase; PDBTitle: structure of the cold active phenylalanine hydroxylase from2 colwellia psychrerythraea 34h 68 d1sisa_ not modelled 7.5 19 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 69 c1ixrA_ not modelled 7.5 20 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 70 c2phmA_ not modelled 7.4 35 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 71 c1kf9C_ not modelled 7.2 12 PDB header:hormone/growth factor Chain: C: PDB Molecule:extracellular domain human growth hormone PDBTitle: phage display derived variant of human growth hormone2 complexed with two copies of the extracellular domain of3 its receptor 72 c3hhrC_ not modelled 7.0 12 PDB header:hormone/receptor Chain: C: PDB Molecule:human growth hormone receptor (hghbp); PDBTitle: human growth hormone and extracellular domain of its2 receptor: crystal structure of the complex 73 d1chla_ not modelled 7.0 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 74 d1p9ma3 not modelled 6.9 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 75 d1wisa1 not modelled 6.8 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 76 c3h7hA_ not modelled 6.6 12 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 77 d1vlpa1 not modelled 6.6 19 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 78 d1x5xa1 not modelled 6.6 6 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 79 c3dclC_ not modelled 6.6 50 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 80 c2erjF_ not modelled 6.4 27 PDB header:immune system/cytokine Chain: F: PDB Molecule:interleukin-2 receptor beta chain; PDBTitle: crystal structure of the heterotrimeric interleukin-2 receptor in2 complex with interleukin-2 81 d2b5ib2 not modelled 6.4 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 82 c2wgnB_ not modelled 6.4 38 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp 83 c2yuwA_ not modelled 6.4 21 PDB header:cell adhesion Chain: A: PDB Molecule:myosin binding protein c, slow type; PDBTitle: solution structure of 2nd fibronectin domain of slow type2 myosin-binding protein c 84 d1j9ia_ not modelled 6.4 10 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 85 d1ybea2 not modelled 6.3 31 Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like 86 d1x5aa1 not modelled 6.3 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 87 c2g8yB_ not modelled 6.3 25 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 88 d1cfba1 not modelled 6.2 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 89 d1qg3a2 not modelled 6.1 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 90 d2gysa2 not modelled 6.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 91 d3d4ub1 not modelled 5.9 50 Fold:Defensin-like Superfamily:Defensin-like Family:Tick carboxypeptidase inhibitor-like 92 c2yrzA_ not modelled 5.9 38 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-4; PDBTitle: solution structure of the fibronectin type iii domain of2 human integrin beta-4 93 d2b3ya1 not modelled 5.9 43 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:LeuD-like 94 d2ixta1 not modelled 5.8 27 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 95 d1u5tb1 not modelled 5.8 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 96 c2e7hA_ not modelled 5.7 31 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-b receptor 4; PDBTitle: solution structure of the second fn3 domain from human2 ephrin type-b receptor 4 97 d1uema_ not modelled 5.5 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 98 d2k49a1 not modelled 5.5 29 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 99 d2crma1 not modelled 5.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0