Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	T	E	Q	Q	R	R	E	L	D	W	E	K	T	D	G	L	M	P	V	I	V	Q	H	A	V	S	G	E	V	L	M	L	G	Y	M	N	P	E	A	L	D	K	T	L	E	S	G	K	V	T	F	F	S	R	T	K	Q	R
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	W	T	K	G	E	T	S	G	N	F	L	N	V	V	S	I	A	P	D	C	D	N	D	T	L	L	V	L	A	N	P	I	G	P	T	C	H	K	G	T	S	S	C	F	G	D	T	A	H	Q	W	L	F	L	Y	Q	L	E	Q
Secondary structure
SS confidence
Disorder		?	?	?																																									?		?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	A	E	R	K	S	A	D	P	E	T	S	Y	T	A	K	L	Y	A	S	G	T	K	R	I	A	Q	K	V	G	E	E	G	V	E	T	A	L	A	A	T	V	H	D	R	F	E	L	T	N	E	A	S	D	L	M	Y	H	L
Secondary structure
SS confidence
Disorder								?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence		L	V	L	L	Q	D	Q	G	L	D	L	T	T	V	I	E	N	L	R	K	R	H	Q
Secondary structure
SS confidence
Disorder																							?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zps chain A domain 1 Region: 9 - 108 Aligned: 99 Modelled: 100 Confidence: 100.0% Identity: 37% Fold: HisI-like Superfamily: HisI-like Family: HisI-like Phyre2 PDB 2a7w chain A domain 1 Region: 113 - 202 Aligned: 90 Modelled: 90 Confidence: 100.0% Identity: 36% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 2a7w chain F Region: 113 - 202 Aligned: 90 Modelled: 90 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 Phyre2 PDB 1yvw chain A domain 1 Region: 115 - 202 Aligned: 88 Modelled: 88 Confidence: 100.0% Identity: 32% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 1yvw chain D Region: 115 - 202 Aligned: 88 Modelled: 88 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13. Phyre2 PDB 1y6x chain A domain 1 Region: 113 - 198 Aligned: 86 Modelled: 86 Confidence: 100.0% Identity: 30% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 1yxb chain A domain 1 Region: 118 - 199 Aligned: 82 Modelled: 82 Confidence: 99.9% Identity: 33% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 3crc chain B Region: 146 - 202 Aligned: 57 Modelled: 57 Confidence: 98.8% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response Phyre2 PDB 2yxh chain B Region: 140 - 201 Aligned: 62 Modelled: 62 Confidence: 98.8% Identity: 24% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima Phyre2 PDB 1vmg chain A Region: 134 - 197 Aligned: 64 Modelled: 64 Confidence: 98.5% Identity: 19% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2a3q chain A domain 1 Region: 115 - 202 Aligned: 82 Modelled: 88 Confidence: 98.3% Identity: 23% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 3obc chain B Region: 115 - 202 Aligned: 82 Modelled: 87 Confidence: 98.3% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution Phyre2 PDB 2gta chain D domain 1 Region: 143 - 203 Aligned: 61 Modelled: 61 Confidence: 98.3% Identity: 15% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2q4p chain A Region: 115 - 202 Aligned: 82 Modelled: 88 Confidence: 98.3% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 Phyre2 PDB 2gta chain A domain 1 Region: 143 - 203 Aligned: 61 Modelled: 61 Confidence: 98.2% Identity: 16% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2q9l chain A Region: 115 - 197 Aligned: 72 Modelled: 83 Confidence: 98.1% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) Phyre2 PDB 2oie chain A domain 1 Region: 115 - 196 Aligned: 76 Modelled: 82 Confidence: 98.0% Identity: 22% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2yf3 chain F Region: 150 - 200 Aligned: 51 Modelled: 51 Confidence: 96.3% Identity: 25% PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese Phyre2 PDB 2rfp chain A Region: 126 - 200 Aligned: 75 Modelled: 75 Confidence: 84.3% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution Phyre2 PDB 2p06 chain A Region: 114 - 184 Aligned: 69 Modelled: 71 Confidence: 71.2% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304 Phyre2 1 d1zpsa1 2 d2a7wa1 3 c2a7wF_ 4 d1yvwa1 5 c1yvwD_ 6 d1y6xa1 7 d1yxba1 8 c3crcB_ 9 c2yxhB_ 10 d1vmga_ 11 d2a3qa1 12 c3obcB_ 13 d2gtad1 14 c2q4pA_ 15 d2gtaa1 16 c2q9lA_ 17 d2oiea1 18 c2yf3F_ 19 c2rfpA_ 20 c2p06A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1zpsa1 100.0 37 Fold:HisI-like Superfamily:HisI-like Family:HisI-like 2 d2a7wa1 100.0 36 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 3 c2a7wF_ 100.0 36 PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 4 d1yvwa1 100.0 32 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 5 c1yvwD_ 100.0 32 PDB header:hydrolase Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13. 6 d1y6xa1 100.0 30 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 7 d1yxba1 99.9 33 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 8 c3crcB_ 98.8 23 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 9 c2yxhB_ 98.8 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 10 d1vmga_ 98.5 19 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 11 d2a3qa1 98.3 23 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 12 c3obcB_ 98.3 20 PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution 13 d2gtad1 98.3 15 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 14 c2q4pA_ 98.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 15 d2gtaa1 98.2 16 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 16 c2q9lA_ 98.1 24 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 17 d2oiea1 98.0 22 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 18 c2yf3F_ 96.3 25 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 19 c2rfpA_ 84.3 13 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 20 c2p06A_ 71.2 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304 21 d2p06a1 not modelled 71.2 23 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:AF0060-like 22 d1ulva4 not modelled 41.9 11 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 23 d1lf6a2 not modelled 38.2 21 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like 24 d1m4ka2 not modelled 33.8 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 25 d1nkra2 not modelled 32.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 26 d1nvma1 not modelled 31.1 15 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 27 d1qcqa_ not modelled 25.1 17 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 28 d1j3ea_ not modelled 23.0 21 Fold:Replication modulator SeqA, C-terminal DNA-binding domain Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain Family:Replication modulator SeqA, C-terminal DNA-binding domain 29 c2a2oG_ not modelled 21.7 11 PDB header:transcription Chain: G: PDB Molecule:hypothetical protein bt3146; PDBTitle: crystal structure of a putativetena family transcriptional regulator2 (bt_3146) from bacteroides thetaiotaomicron vpi-5482 at 2.16 a3 resolution 30 c2z1dA_ not modelled 19.6 20 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 31 d1axib1 not modelled 18.1 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 32 c2i7uA_ not modelled 17.1 28 PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets 33 d2od6a1 not modelled 16.1 50 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Marine metagenome family DABB1 34 c1z6rC_ not modelled 15.6 14 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 35 c3loeA_ not modelled 13.8 31 PDB header:antimicrobial protein Chain: A: PDB Molecule:neutrophil defensin 1; PDBTitle: crystal structure of human alpha-defensin 1 (f28a mutant) 36 d1z05a2 not modelled 13.7 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 37 d1z2ua1 not modelled 13.5 21 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 38 d2a2ma1 not modelled 13.5 11 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 39 c3gnyA_ not modelled 13.3 31 PDB header:antimicrobial protein Chain: A: PDB Molecule:neutrophil defensin 1; PDBTitle: crystal structure of human alpha-defensin 1 (hnp1) 40 c3lo7A_ not modelled 13.2 25 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis 41 d1id3b_ not modelled 13.1 10 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 42 d1pjua2 not modelled 12.8 39 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 43 c3hj2B_ not modelled 12.0 31 PDB header:antimicrobial protein Chain: B: PDB Molecule:human neutrophil peptide 1; PDBTitle: crystal structure of covalent dimer of hnp1 44 c3ue3A_ not modelled 11.9 25 PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3 45 c3equB_ not modelled 11.6 44 PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae 46 d1nkra1 not modelled 11.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 47 d1jeya1 not modelled 11.2 13 Fold:SPOC domain-like Superfamily:SPOC domain-like Family:Ku70 subunit middle domain 48 c2ap1A_ not modelled 11.1 12 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 49 d2zjrs1 not modelled 11.0 6 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 50 c2kloA_ not modelled 10.9 15 PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain 51 d2afja1 not modelled 10.9 9 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain 52 d1iqpa1 not modelled 10.6 21 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 53 c1z05A_ not modelled 10.5 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 54 d1m4ka1 not modelled 10.1 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 55 c3r4rB_ not modelled 9.9 25 PDB header:cell adhesion Chain: B: PDB Molecule:hypothetical fimbrial assembly protein; PDBTitle: crystal structure of a hypothetical fimbrial assembly protein2 (bdi_3522) from parabacteroides distasonis atcc 8503 at 2.38 a3 resolution 56 d1z6ra3 not modelled 9.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 57 c3a4cA_ not modelled 9.7 16 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 58 d1ex4a1 not modelled 9.6 17 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 59 d1rp5a4 not modelled 9.2 29 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 60 d1vqqa3 not modelled 9.2 31 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 61 d2ayva1 not modelled 8.8 23 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 62 d3b5ha2 not modelled 8.8 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 63 d1z3da1 not modelled 8.8 19 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 64 c2rkkA_ not modelled 8.7 19 PDB header:lipid transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1; PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain 65 d2zjrk1 not modelled 8.5 18 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 66 d2ahme1 not modelled 8.4 18 Fold:Coronavirus NSP8-like Superfamily:Coronavirus NSP8-like Family:Coronavirus NSP8-like 67 d1feua_ not modelled 8.4 20 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 68 c2pmzQ_ not modelled 8.4 27 PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 69 d2dl2a1 not modelled 8.1 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 70 d1kx5b_ not modelled 8.1 10 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 71 d1y6la_ not modelled 8.0 17 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 72 d1k38a_ not modelled 8.0 15 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 73 c3eo3B_ not modelled 7.9 16 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 74 c3ugfB_ not modelled 7.7 0 PDB header:transferase Chain: B: PDB Molecule:sucrose:(sucrose/fructan) 6-fructosyltransferase; PDBTitle: crystal structure of a 6-sst/6-sft from pachysandra terminalis 75 c3hjlA_ not modelled 7.6 15 PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus 76 c2ahmG_ not modelled 7.5 18 PDB header:viral protein, replication Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain; PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer 77 d2huec1 not modelled 7.4 10 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 78 c2x48B_ not modelled 7.2 16 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 79 d1k47a2 not modelled 7.2 10 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 80 c3tixA_ not modelled 7.1 19 PDB header:gene regulation/protein binding Chain: A: PDB Molecule:ubiquitin-like protein smt3, rna-induced transcriptional PDBTitle: crystal structure of the chp1-tas3 complex core 81 c1mwuA_ not modelled 7.1 31 PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. 82 d1w1we_ not modelled 7.1 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rad21/Rec8-like 83 c1w1wF_ not modelled 7.1 29 PDB header:cell adhesion Chain: F: PDB Molecule:sister chromatid cohesion protein 1; PDBTitle: sc smc1hd:scc1-c complex, atpgs 84 d2aaka_ not modelled 7.0 15 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 85 d1cg2a2 not modelled 7.0 13 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 86 c2jtdA_ not modelled 7.0 10 PDB header:cell adhesion Chain: A: PDB Molecule:myomesin-1; PDBTitle: skelemin immunoglobulin c2 like domain 4 87 d1ov9a_ not modelled 7.0 35 Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins 88 d1ryqa_ not modelled 6.9 42 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 89 d2ok3a1 not modelled 6.9 24 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:Cyclophilin (peptidylprolyl isomerase) 90 d1kg1a_ not modelled 6.9 33 Fold:Necrosis inducing protein 1, NIP1 Superfamily:Necrosis inducing protein 1, NIP1 Family:Necrosis inducing protein 1, NIP1 91 c2z56B_ not modelled 6.9 29 PDB header:hydrolase Chain: B: PDB Molecule:tk-subtilisin; PDBTitle: crystal structure of g56s-propeptide:s324a-subtilisin complex 92 c3oc2A_ not modelled 6.8 19 PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa 93 d2fnja1 not modelled 6.8 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain 94 c2wadB_ not modelled 6.7 18 PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) 95 d2f09a1 not modelled 6.6 19 Fold:Streptavidin-like Superfamily:YdhA-like Family:YdhA-like 96 d1k25a4 not modelled 6.5 29 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 97 d1dfup_ not modelled 6.5 9 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 98 d2z3qa1 not modelled 6.4 28 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 99 d1pyya4 not modelled 6.4 29 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0