Phyre 2 Results for P06989

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P06989
Date | Thu Jan 5 10:59:47 GMT 2012
Unique Job ID | 5e0299ff3582fa48

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1zpsa1
Top template information
Fold:HisI-like Superfamily:HisI-like Family:HisI-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 49%
99 residues ( 49% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
189 residues ( 93%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | T | E | Q | Q | R | R | E | L | D | W | E | K | T | D | G | L | M | P | V | I | V | Q | H | A | V | S | G | E | V | L | M | L | G | Y | M | N | P | E | A | L | D | K | T | L | E | S | G | K | V | T | F | F | S | R | T | K | Q | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | W | T | K | G | E | T | S | G | N | F | L | N | V | V | S | I | A | P | D | C | D | N | D | T | L | L | V | L | A | N | P | I | G | P | T | C | H | K | G | T | S | S | C | F | G | D | T | A | H | Q | W | L | F | L | Y | Q | L | E | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | L | A | E | R | K | S | A | D | P | E | T | S | Y | T | A | K | L | Y | A | S | G | T | K | R | I | A | Q | K | V | G | E | E | G | V | E | T | A | L | A | A | T | V | H | D | R | F | E | L | T | N | E | A | S | D | L | M | Y | H | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | .
Sequence |  | L | V | L | L | Q | D | Q | G | L | D | L | T | T | V | I | E | N | L | R | K | R | H | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1zpsa1 |

### PDB 1zps chain A domain 1

Region: 9 - 108
Aligned: 99
Modelled: 100
Confidence: 100.0%
Identity: 37%
Fold: HisI-like
Superfamily: HisI-like
Family: HisI-like

Phyre2
2 |
| d2a7wa1 |

### PDB 2a7w chain A domain 1

Region: 113 - 202
Aligned: 90
Modelled: 90
Confidence: 100.0%
Identity: 36%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: HisE-like (PRA-PH)

Phyre2
3 |
| c2a7wF_ |

### PDB 2a7w chain F

Region: 113 - 202
Aligned: 90
Modelled: 90
Confidence: 100.0%
Identity: 36%
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7

Phyre2
4 |
| d1yvwa1 |

### PDB 1yvw chain A domain 1

Region: 115 - 202
Aligned: 88
Modelled: 88
Confidence: 100.0%
Identity: 32%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: HisE-like (PRA-PH)

Phyre2
5 |
| c1yvwD_ |

### PDB 1yvw chain D

Region: 115 - 202
Aligned: 88
Modelled: 88
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.

Phyre2
6 |
| d1y6xa1 |

### PDB 1y6x chain A domain 1

Region: 113 - 198
Aligned: 86
Modelled: 86
Confidence: 100.0%
Identity: 30%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: HisE-like (PRA-PH)

Phyre2
7 |
| d1yxba1 |

### PDB 1yxb chain A domain 1

Region: 118 - 199
Aligned: 82
Modelled: 82
Confidence: 99.9%
Identity: 33%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: HisE-like (PRA-PH)

Phyre2
8 |
| c3crcB_ |

### PDB 3crc chain B

Region: 146 - 202
Aligned: 57
Modelled: 57
Confidence: 98.8%
Identity: 23%
PDB header:hydrolase
Chain: B: PDB Molecule:protein mazg;
PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response

Phyre2
9 |
| c2yxhB_ |

### PDB 2yxh chain B

Region: 140 - 201
Aligned: 62
Modelled: 62
Confidence: 98.8%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mazg-related protein;
PDBTitle: crystal structure of mazg-related protein from thermotoga maritima

Phyre2
10 |
| d1vmga_ |

### PDB 1vmg chain A

Region: 134 - 197
Aligned: 64
Modelled: 64
Confidence: 98.5%
Identity: 19%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: MazG-like

Phyre2
11 |
| d2a3qa1 |

### PDB 2a3q chain A domain 1

Region: 115 - 202
Aligned: 82
Modelled: 88
Confidence: 98.3%
Identity: 23%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: MazG-like

Phyre2
12 |
| c3obcB_ |

### PDB 3obc chain B

Region: 115 - 202
Aligned: 82
Modelled: 87
Confidence: 98.3%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:pyrophosphatase;
PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution

Phyre2
13 |
| d2gtad1 |

### PDB 2gta chain D domain 1

Region: 143 - 203
Aligned: 61
Modelled: 61
Confidence: 98.3%
Identity: 15%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: MazG-like

Phyre2
14 |
| c2q4pA_ |

### PDB 2q4p chain A

Region: 115 - 202
Aligned: 82
Modelled: 88
Confidence: 98.3%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898

Phyre2
15 |
| d2gtaa1 |

### PDB 2gta chain A domain 1

Region: 143 - 203
Aligned: 61
Modelled: 61
Confidence: 98.2%
Identity: 16%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: MazG-like

Phyre2
16 |
| c2q9lA_ |

### PDB 2q9l chain A

Region: 115 - 197
Aligned: 72
Modelled: 83
Confidence: 98.1%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)

Phyre2
17 |
| d2oiea1 |

### PDB 2oie chain A domain 1

Region: 115 - 196
Aligned: 76
Modelled: 82
Confidence: 98.0%
Identity: 22%
Fold: all-alpha NTP pyrophosphatases
Superfamily: all-alpha NTP pyrophosphatases
Family: MazG-like

Phyre2
18 |
| c2yf3F_ |

### PDB 2yf3 chain F

Region: 150 - 200
Aligned: 51
Modelled: 51
Confidence: 96.3%
Identity: 25%
PDB header:hydrolase
Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase;
PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese

Phyre2
19 |
| c2rfpA_ |

### PDB 2rfp chain A

Region: 126 - 200
Aligned: 75
Modelled: 75
Confidence: 84.3%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution

Phyre2
20 |
| c2p06A_ |

### PDB 2p06 chain A

Region: 114 - 184
Aligned: 69
Modelled: 71
Confidence: 71.2%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1zpsa1 |
|  | 100.0 | 37 | Fold:HisI-like Superfamily:HisI-like Family:HisI-like
2 | d2a7wa1 |
|  | 100.0 | 36 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH)
3 | c2a7wF_ |
|  | 100.0 | 36 | PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7
4 | d1yvwa1 |
|  | 100.0 | 32 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH)
5 | c1yvwD_ |
|  | 100.0 | 32 | PDB header:hydrolase Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
6 | d1y6xa1 |
|  | 100.0 | 30 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH)
7 | d1yxba1 |
|  | 99.9 | 33 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH)
8 | c3crcB_ |
|  | 98.8 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response
9 | c2yxhB_ |
|  | 98.8 | 24 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima
10 | d1vmga_ |
|  | 98.5 | 19 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like
11 | d2a3qa1 |
|  | 98.3 | 23 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like
12 | c3obcB_ |
|  | 98.3 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution
13 | d2gtad1 |
|  | 98.3 | 15 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like
14 | c2q4pA_ |
|  | 98.3 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
15 | d2gtaa1 |
|  | 98.2 | 16 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like
16 | c2q9lA_ |
|  | 98.1 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212)
17 | d2oiea1 |
|  | 98.0 | 22 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like
18 | c2yf3F_ |
|  | 96.3 | 25 | PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese
19 | c2rfpA_ |
|  | 84.3 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
20 | c2p06A_ |
|  | 71.2 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
21 | d2p06a1 |
| not modelled | 71.2 | 23 | Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:AF0060-like
22 | d1ulva4 |
| not modelled | 41.9 | 11 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like
23 | d1lf6a2 |
| not modelled | 38.2 | 21 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Bacterial glucoamylase N-terminal domain-like
24 | d1m4ka2 |
| not modelled | 33.8 | 17 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
25 | d1nkra2 |
| not modelled | 32.0 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
26 | d1nvma1 |
| not modelled | 31.1 | 15 | Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like
27 | d1qcqa_ |
| not modelled | 25.1 | 17 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
28 | d1j3ea_ |
| not modelled | 23.0 | 21 | Fold:Replication modulator SeqA, C-terminal DNA-binding domain Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain Family:Replication modulator SeqA, C-terminal DNA-binding domain
29 | c2a2oG_ |
| not modelled | 21.7 | 11 | PDB header:transcription Chain: G: PDB Molecule:hypothetical protein bt3146; PDBTitle: crystal structure of a putativetena family transcriptional regulator2 (bt_3146) from bacteroides thetaiotaomicron vpi-5482 at 2.16 a3 resolution
30 | c2z1dA_ |
| not modelled | 19.6 | 20 | PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
31 | d1axib1 |
| not modelled | 18.1 | 23 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III
32 | c2i7uA_ |
| not modelled | 17.1 | 28 | PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets
33 | d2od6a1 |
| not modelled | 16.1 | 50 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Marine metagenome family DABB1
34 | c1z6rC_ |
| not modelled | 15.6 | 14 | PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli
35 | c3loeA_ |
| not modelled | 13.8 | 31 | PDB header:antimicrobial protein Chain: A: PDB Molecule:neutrophil defensin 1; PDBTitle: crystal structure of human alpha-defensin 1 (f28a mutant)
36 | d1z05a2 |
| not modelled | 13.7 | 20 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK
37 | d1z2ua1 |
| not modelled | 13.5 | 21 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
38 | d2a2ma1 |
| not modelled | 13.5 | 11 | Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4
39 | c3gnyA_ |
| not modelled | 13.3 | 31 | PDB header:antimicrobial protein Chain: A: PDB Molecule:neutrophil defensin 1; PDBTitle: crystal structure of human alpha-defensin 1 (hnp1)
40 | c3lo7A_ |
| not modelled | 13.2 | 25 | PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis
41 | d1id3b_ |
| not modelled | 13.1 | 10 | Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones
42 | d1pjua2 |
| not modelled | 12.8 | 39 | Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors
43 | c3hj2B_ |
| not modelled | 12.0 | 31 | PDB header:antimicrobial protein Chain: B: PDB Molecule:human neutrophil peptide 1; PDBTitle: crystal structure of covalent dimer of hnp1
44 | c3ue3A_ |
| not modelled | 11.9 | 25 | PDB header:transferase Chain: A: PDB Molecule:septum formation, penicillin binding protein 3, PDBTitle: crystal structure of acinetobacter baumanni pbp3
45 | c3equB_ |
| not modelled | 11.6 | 44 | PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae
46 | d1nkra1 |
| not modelled | 11.4 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
47 | d1jeya1 |
| not modelled | 11.2 | 13 | Fold:SPOC domain-like Superfamily:SPOC domain-like Family:Ku70 subunit middle domain
48 | c2ap1A_ |
| not modelled | 11.1 | 12 | PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein
49 | d2zjrs1 |
| not modelled | 11.0 | 6 | Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like
50 | c2kloA_ |
| not modelled | 10.9 | 15 | PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain
51 | d2afja1 |
| not modelled | 10.9 | 9 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain
52 | d1iqpa1 |
| not modelled | 10.6 | 21 | Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain
53 | c1z05A_ |
| not modelled | 10.5 | 18 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
54 | d1m4ka1 |
| not modelled | 10.1 | 36 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
55 | c3r4rB_ |
| not modelled | 9.9 | 25 | PDB header:cell adhesion Chain: B: PDB Molecule:hypothetical fimbrial assembly protein; PDBTitle: crystal structure of a hypothetical fimbrial assembly protein2 (bdi_3522) from parabacteroides distasonis atcc 8503 at 2.38 a3 resolution
56 | d1z6ra3 |
| not modelled | 9.9 | 14 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK
57 | c3a4cA_ |
| not modelled | 9.7 | 16 | PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain
58 | d1ex4a1 |
| not modelled | 9.6 | 17 | Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase
59 | d1rp5a4 |
| not modelled | 9.2 | 29 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
60 | d1vqqa3 |
| not modelled | 9.2 | 31 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
61 | d2ayva1 |
| not modelled | 8.8 | 23 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
62 | d3b5ha2 |
| not modelled | 8.8 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
63 | d1z3da1 |
| not modelled | 8.8 | 19 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
64 | c2rkkA_ |
| not modelled | 8.7 | 19 | PDB header:lipid transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1; PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain
65 | d2zjrk1 |
| not modelled | 8.5 | 18 | Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17
66 | d2ahme1 |
| not modelled | 8.4 | 18 | Fold:Coronavirus NSP8-like Superfamily:Coronavirus NSP8-like Family:Coronavirus NSP8-like
67 | d1feua_ |
| not modelled | 8.4 | 20 | Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like
68 | c2pmzQ_ |
| not modelled | 8.4 | 27 | PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
69 | d2dl2a1 |
| not modelled | 8.1 | 36 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains
70 | d1kx5b_ |
| not modelled | 8.1 | 10 | Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones
71 | d1y6la_ |
| not modelled | 8.0 | 17 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
72 | d1k38a_ |
| not modelled | 8.0 | 15 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
73 | c3eo3B_ |
| not modelled | 7.9 | 16 | PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
74 | c3ugfB_ |
| not modelled | 7.7 | 0 | PDB header:transferase Chain: B: PDB Molecule:sucrose:(sucrose/fructan) 6-fructosyltransferase; PDBTitle: crystal structure of a 6-sst/6-sft from pachysandra terminalis
75 | c3hjlA_ |
| not modelled | 7.6 | 15 | PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus
76 | c2ahmG_ |
| not modelled | 7.5 | 18 | PDB header:viral protein, replication Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain; PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
77 | d2huec1 |
| not modelled | 7.4 | 10 | Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones
78 | c2x48B_ |
| not modelled | 7.2 | 16 | PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
79 | d1k47a2 |
| not modelled | 7.2 | 10 | Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK)
80 | c3tixA_ |
| not modelled | 7.1 | 19 | PDB header:gene regulation/protein binding Chain: A: PDB Molecule:ubiquitin-like protein smt3, rna-induced transcriptional PDBTitle: crystal structure of the chp1-tas3 complex core
81 | c1mwuA_ |
| not modelled | 7.1 | 31 | PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution.
82 | d1w1we_ |
| not modelled | 7.1 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rad21/Rec8-like
83 | c1w1wF_ |
| not modelled | 7.1 | 29 | PDB header:cell adhesion Chain: F: PDB Molecule:sister chromatid cohesion protein 1; PDBTitle: sc smc1hd:scc1-c complex, atpgs
84 | d2aaka_ |
| not modelled | 7.0 | 15 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
85 | d1cg2a2 |
| not modelled | 7.0 | 13 | Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain
86 | c2jtdA_ |
| not modelled | 7.0 | 10 | PDB header:cell adhesion Chain: A: PDB Molecule:myomesin-1; PDBTitle: skelemin immunoglobulin c2 like domain 4
87 | d1ov9a_ |
| not modelled | 7.0 | 35 | Fold:H-NS histone-like proteins Superfamily:H-NS histone-like proteins Family:H-NS histone-like proteins
88 | d1ryqa_ |
| not modelled | 6.9 | 42 | Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like
89 | d2ok3a1 |
| not modelled | 6.9 | 24 | Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:Cyclophilin (peptidylprolyl isomerase)
90 | d1kg1a_ |
| not modelled | 6.9 | 33 | Fold:Necrosis inducing protein 1, NIP1 Superfamily:Necrosis inducing protein 1, NIP1 Family:Necrosis inducing protein 1, NIP1
91 | c2z56B_ |
| not modelled | 6.9 | 29 | PDB header:hydrolase Chain: B: PDB Molecule:tk-subtilisin; PDBTitle: crystal structure of g56s-propeptide:s324a-subtilisin complex
92 | c3oc2A_ |
| not modelled | 6.8 | 19 | PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa
93 | d2fnja1 |
| not modelled | 6.8 | 18 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain
94 | c2wadB_ |
| not modelled | 6.7 | 18 | PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204)
95 | d2f09a1 |
| not modelled | 6.6 | 19 | Fold:Streptavidin-like Superfamily:YdhA-like Family:YdhA-like
96 | d1k25a4 |
| not modelled | 6.5 | 29 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
97 | d1dfup_ |
| not modelled | 6.5 | 9 | Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like
98 | d2z3qa1 |
| not modelled | 6.4 | 28 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines
99 | d1pyya4 |
| not modelled | 6.4 | 29 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0