Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	A	W	E	V	N	F	D	G	L	V	G	L	T	H	H	Y	A	G	L	S	F	G	N	E	A	S	T	R	H	R	F	Q	V	S	N	P	R	L	A	A	K	Q	G	L	L	K	M	K	A	L	A	D	A	G	F	P	Q	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	P	P	H	E	R	P	F	I	P	V	L	R	Q	L	G	F	S	G	S	D	E	Q	V	L	E	K	V	A	R	Q	A	P	H	W	L	S	S	V	S	S	A	S	P	M	W	V	A	N	A	A	T	I	A	P	S	A	D	T
Secondary structure
SS confidence
Disorder																						?																											?	?	?	?	?	?	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	G	K	V	H	L	T	V	A	N	L	N	N	K	F	H	R	S	L	E	A	P	V	T	E	S	L	L	K	A	I	F	N	D	E	E	K	F	S	V	H	S	A	L	P	Q	V	A	L	L	G	D	E	G	A	A	N	H	N
Secondary structure
SS confidence
Disorder																									?																										?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	L	G	G	H	Y	G	E	P	G	M	Q	L	F	V	Y	G	R	E	E	G	N	D	T	R	P	S	R	Y	P	A	R	Q	T	R	E	A	S	E	A	V	A	R	L	N	Q	V	N	P	Q	Q	V	I	F	A	Q	Q	N	P	D
Secondary structure
SS confidence
Disorder						?															?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	I	D	Q	G	V	F	H	N	D	V	I	A	V	S	N	R	Q	V	L	F	C	H	Q	Q	A	F	A	R	Q	S	Q	L	L	A	N	L	R	A	R	V	N	G	F	M	A	I	E	V	P	A	T	Q	V	S	V	S	D	T	V
Secondary structure
SS confidence
Disorder				?																																																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	T	Y	L	F	N	S	Q	L	L	S	R	D	D	G	S	M	M	L	V	L	P	Q	E	C	R	E	H	A	G	V	W	G	Y	L	N	E	L	L	A	A	D	N	P	I	S	E	L	K	V	F	D	L	R	E	S	M	A	N	G
Secondary structure
SS confidence
Disorder												?															?	?													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	G	P	A	C	L	R	L	R	V	V	L	T	E	E	E	R	R	A	V	N	P	A	V	M	M	N	D	T	L	F	N	A	L	N	D	W	V	D	R	Y	Y	R	D	R	L	T	A	A	D	L	A	D	P	Q	L	L	R	E	G
Secondary structure
SS confidence
Disorder													?						?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Sequence		R	E	A	L	D	V	L	S	Q	L	L	N	L	G	S	V	Y	P	F	Q	R	E	G	G	G	N	G
Secondary structure
SS confidence
Disorder																							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ynh chain A domain 1 Region: 3 - 441 Aligned: 439 Modelled: 439 Confidence: 100.0% Identity: 100% Fold: Pentein, beta/alpha-propeller Superfamily: Pentein Family: Succinylarginine dihydrolase-like Phyre2 PDB 1h70 chain A Region: 30 - 369 Aligned: 232 Modelled: 291 Confidence: 97.0% Identity: 19% Fold: Pentein, beta/alpha-propeller Superfamily: Pentein Family: Dimethylarginine dimethylaminohydrolase DDAH Phyre2 PDB 1bwd chain A Region: 134 - 370 Aligned: 214 Modelled: 237 Confidence: 90.3% Identity: 12% Fold: Pentein, beta/alpha-propeller Superfamily: Pentein Family: Amidinotransferase Phyre2 PDB 3dyd chain B Region: 310 - 402 Aligned: 74 Modelled: 93 Confidence: 81.8% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase Phyre2 PDB 1jdw chain A Region: 134 - 371 Aligned: 212 Modelled: 231 Confidence: 76.1% Identity: 15% Fold: Pentein, beta/alpha-propeller Superfamily: Pentein Family: Amidinotransferase Phyre2 PDB 1jdw chain A Region: 134 - 371 Aligned: 212 Modelled: 231 Confidence: 76.1% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase; PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis Phyre2 PDB 2ci6 chain A Region: 22 - 370 Aligned: 251 Modelled: 291 Confidence: 75.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:ng, ng-dimethylarginine dimethylaminohydrolase 1; PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase i bound with zinc low ph Phyre2 PDB 1wst chain A domain 1 Region: 296 - 403 Aligned: 91 Modelled: 108 Confidence: 66.4% Identity: 12% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: AAT-like Phyre2 PDB 8jdw chain A Region: 134 - 371 Aligned: 212 Modelled: 238 Confidence: 64.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase); PDBTitle: crystal structure of human l-arginine:glycine2 amidinotransferase in complex with l-alanine Phyre2 PDB 3i4a chain A Region: 22 - 370 Aligned: 254 Modelled: 279 Confidence: 61.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:n(g),n(g)-dimethylarginine dimethylaminohydrolase PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase-1 (ddah-1) in complex with n5-(1-3 iminopropyl)-l-ornithine Phyre2 PDB 1bl0 chain A domain 1 Region: 387 - 413 Aligned: 27 Modelled: 27 Confidence: 53.8% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 3pdx chain A Region: 361 - 402 Aligned: 32 Modelled: 42 Confidence: 53.4% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase Phyre2 PDB 1d5y chain A domain 1 Region: 388 - 413 Aligned: 26 Modelled: 26 Confidence: 43.5% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 3fkd chain C Region: 207 - 254 Aligned: 48 Modelled: 48 Confidence: 41.8% Identity: 15% PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis Phyre2 PDB 3p1t chain B Region: 204 - 256 Aligned: 53 Modelled: 53 Confidence: 37.3% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution Phyre2 PDB 3ctz chain A Region: 274 - 412 Aligned: 132 Modelled: 139 Confidence: 36.7% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro aminopeptidase 1; PDBTitle: structure of human cytosolic x-prolyl aminopeptidase Phyre2 PDB 2bo9 chain B domain 1 Region: 206 - 237 Aligned: 32 Modelled: 32 Confidence: 32.8% Identity: 25% Fold: Cystatin-like Superfamily: Cystatin/monellin Family: Latexin-like Phyre2 PDB 3eib chain B Region: 310 - 402 Aligned: 74 Modelled: 93 Confidence: 31.2% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Phyre2 PDB 3oou chain A Region: 390 - 412 Aligned: 23 Modelled: 23 Confidence: 30.0% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua Phyre2 PDB 3mkl chain B Region: 386 - 413 Aligned: 28 Modelled: 28 Confidence: 28.6% Identity: 11% PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 Phyre2 1 d1ynha1 2 d1h70a_ 3 d1bwda_ 4 c3dydB_ 5 d1jdwa_ 6 c1jdwA_ 7 c2ci6A_ 8 d1wsta1 9 c8jdwA_ 10 c3i4aA_ 11 d1bl0a1 12 c3pdxA_ 13 d1d5ya1 14 c3fkdC_ 15 c3p1tB_ 16 c3ctzA_ 17 d2bo9b1 18 c3eibB_ 19 c3oouA_ 20 c3mklB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ynha1 100.0 100 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Succinylarginine dihydrolase-like 2 d1h70a_ 97.0 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Dimethylarginine dimethylaminohydrolase DDAH 3 d1bwda_ 90.3 12 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase 4 c3dydB_ 81.8 18 PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase 5 d1jdwa_ 76.1 15 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase 6 c1jdwA_ 76.1 15 PDB header:transferase Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase; PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis 7 c2ci6A_ 75.9 19 PDB header:hydrolase Chain: A: PDB Molecule:ng, ng-dimethylarginine dimethylaminohydrolase 1; PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase i bound with zinc low ph 8 d1wsta1 66.4 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 9 c8jdwA_ 64.6 15 PDB header:transferase Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase); PDBTitle: crystal structure of human l-arginine:glycine2 amidinotransferase in complex with l-alanine 10 c3i4aA_ 61.2 18 PDB header:hydrolase Chain: A: PDB Molecule:n(g),n(g)-dimethylarginine dimethylaminohydrolase PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase-1 (ddah-1) in complex with n5-(1-3 iminopropyl)-l-ornithine 11 d1bl0a1 53.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 12 c3pdxA_ 53.4 19 PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase 13 d1d5ya1 43.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 14 c3fkdC_ 41.8 15 PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis 15 c3p1tB_ 37.3 13 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 16 c3ctzA_ 36.7 19 PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro aminopeptidase 1; PDBTitle: structure of human cytosolic x-prolyl aminopeptidase 17 d2bo9b1 32.8 25 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 18 c3eibB_ 31.2 12 PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana 19 c3oouA_ 30.0 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua 20 c3mklB_ 28.6 11 PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 21 d1rxxa_ not modelled 28.3 24 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 22 d1fg7a_ not modelled 28.0 30 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 23 c1bl0A_ not modelled 27.8 12 PDB header:transcription/dna Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein); PDBTitle: multiple antibiotic resistance protein (mara)/dna complex 24 c3t18D_ not modelled 26.0 16 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 25 c3g7qA_ not modelled 24.7 12 PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution 26 c2k9sA_ not modelled 22.1 15 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 27 c2of5K_ not modelled 21.7 15 PDB header:apoptosis Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing PDBTitle: oligomeric death domain complex 28 c3hdoB_ not modelled 21.6 19 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 29 c3oioA_ not modelled 21.0 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum 30 d2v7fa1 not modelled 19.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 31 d2vnud3 not modelled 18.5 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 32 c2bo9B_ not modelled 18.4 25 PDB header:hydrolase Chain: B: PDB Molecule:human latexin; PDBTitle: human carboxypeptidase a4 in complex with human latexin. 33 d2foka1 not modelled 18.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Restriction endonuclease FokI, N-terminal (recognition) domain 34 c3e4wB_ not modelled 17.6 28 PDB header:oxidoreductase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a 33kda catalase-related protein from2 mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal3 form. 35 c3nzlA_ not modelled 17.4 35 PDB header:transcription Chain: A: PDB Molecule:dna-binding protein satb1; PDBTitle: crystal structure of the n-terminal domain of dna-binding protein2 satb1 from homo sapiens, northeast structural genomics consortium3 target hr4435b 36 c3gbgA_ not modelled 17.3 12 PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 37 c3iz6S_ not modelled 16.5 20 PDB header:ribosome Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 38 c2zc0C_ not modelled 15.8 17 PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase 39 d1s9ra_ not modelled 15.5 12 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 40 d1lc5a_ not modelled 15.5 24 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 41 d1x0ma1 not modelled 14.7 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 42 c3jyvT_ not modelled 14.6 20 PDB header:ribosome Chain: T: PDB Molecule:s19e protein; PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 43 d1vp4a_ not modelled 14.6 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 44 c3mn2B_ not modelled 14.5 8 PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 45 c3cq6E_ not modelled 13.9 17 PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound ) 46 c3ismA_ not modelled 13.6 19 PDB header:hydrolase inhibitor/hydrolase Chain: A: PDB Molecule:cg8862; PDBTitle: crystal structure of the endog/endogi complex: mechanism of endog2 inhibition 47 c3getA_ not modelled 13.4 22 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution 48 c3ftbA_ not modelled 13.2 10 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 49 c3aiiA_ not modelled 12.7 26 PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus 50 c3by0B_ not modelled 12.5 18 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 51 c3lsgD_ not modelled 12.4 18 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 52 c3ly1C_ not modelled 12.0 16 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 53 c3ezsB_ not modelled 11.8 13 PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution 54 d1bw0a_ not modelled 11.7 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 55 c3s1sA_ not modelled 11.4 10 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 56 c2douA_ not modelled 10.9 18 PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 57 c2re3A_ not modelled 10.6 45 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 58 c2xznT_ not modelled 10.5 17 PDB header:ribosome Chain: T: PDB Molecule:rps19e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 59 c2yx5A_ not modelled 10.1 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 60 d1n26a1 not modelled 10.0 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 61 d2nwva1 not modelled 9.9 39 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 62 d1v30a_ not modelled 9.8 43 Fold:Gamma-glutamyl cyclotransferase-like Superfamily:Gamma-glutamyl cyclotransferase-like Family:Gamma-glutamyl cyclotransferase-like 63 c2e12B_ not modelled 9.7 50 PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif 64 d1xhsa_ not modelled 9.6 71 Fold:Gamma-glutamyl cyclotransferase-like Superfamily:Gamma-glutamyl cyclotransferase-like Family:Gamma-glutamyl cyclotransferase-like 65 c1d5yD_ not modelled 9.5 15 PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna 66 c2wo3B_ not modelled 9.4 40 PDB header:transferase/signaling protein Chain: B: PDB Molecule:ephrin-a2; PDBTitle: crystal structure of the epha4-ephrina2 complex 67 c3ke2A_ not modelled 9.4 19 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 68 c2k6lA_ not modelled 9.0 50 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 69 c3a0hL_ not modelled 8.8 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 70 c3a0hl_ not modelled 8.8 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 71 d2nlva1 not modelled 8.8 28 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 72 c3if2B_ not modelled 8.7 14 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution 73 c3arcL_ not modelled 8.6 67 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 74 c1s5lL_ not modelled 8.6 67 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 75 c3prrL_ not modelled 8.6 67 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 76 c2axtl_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 77 c3a0bL_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 78 c3a0bl_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 79 c3bz1L_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 80 d2axtl1 not modelled 8.6 67 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 81 c3bz2L_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 82 c3prqL_ not modelled 8.6 67 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 83 c2axtL_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 84 c3kziL_ not modelled 8.6 67 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 85 c1s5ll_ not modelled 8.6 67 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 86 c2e58D_ not modelled 8.5 22 PDB header:transferase Chain: D: PDB Molecule:mnmc2; PDBTitle: crystal structure of mnmc2 from aquifex aeolicus 87 d1j32a_ not modelled 8.2 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 88 c2euzA_ not modelled 7.9 29 PDB header:cell cycle/dna Chain: A: PDB Molecule:ndt80 protein; PDBTitle: structure of a ndt80-dna complex (mse mutant mc5t) 89 d1mnna_ not modelled 7.6 29 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:DNA-binding domain from NDT80 90 d1dqna_ not modelled 7.5 32 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 91 c1wr1B_ not modelled 7.5 29 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 92 d1xi9a_ not modelled 7.2 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 93 d2p97a1 not modelled 7.0 15 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 94 d1smye_ not modelled 6.9 41 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RNA polymerase omega subunit 95 c3ol4B_ not modelled 6.7 15 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 96 c2xstA_ not modelled 6.6 13 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 97 d1dxha2 not modelled 6.6 8 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 98 d1lfpa_ not modelled 6.5 16 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 99 d1gg4a3 not modelled 6.4 9 Fold:MurF and HprK N-domain-like Superfamily:MurE/MurF N-terminal domain Family:MurE/MurF N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0