Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	P	C	V	M	M	R	G	G	T	S	R	G	A	F	L	L	A	E	H	L	P	E	D	Q	T	Q	R	D	K	I	L	M	A	I	M	G	S	G	N	D	L	E	I	D	G	I	G	G	G	N	P	L	T	S	K	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?																				?	?	?																								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	I	I	S	R	S	S	D	P	R	A	D	V	D	Y	L	F	A	Q	V	I	V	H	E	Q	R	V	D	T	T	P	N	C	G	N	M	L	S	G	V	G	A	F	A	I	E	N	G	L	I	A	A	T	S	P	V	T	R	V	R
Secondary structure
SS confidence
Disorder																									?		?																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	R	N	V	N	T	G	T	F	I	E	A	D	V	Q	T	P	N	G	V	V	E	Y	E	G	S	A	R	I	D	G	V	P	G	T	A	A	P	V	A	L	T	F	L	N	A	A	G	T	K	T	G	K	V	F	P	T	D	N	Q
Secondary structure
SS confidence
Disorder																																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	D	Y	F	D	D	V	P	V	T	C	I	D	M	A	M	P	V	V	I	I	P	A	E	Y	L	G	K	T	G	Y	E	L	P	A	E	L	D	A	D	K	A	L	L	A	R	I	E	S	I	R	L	Q	A	G	K	A	M	G	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	D	V	S	N	M	V	I	P	K	P	V	L	I	S	P	A	Q	K	G	G	A	I	N	V	R	Y	F	M	P	H	S	C	H	R	A	L	A	I	T	G	A	I	A	I	S	S	S	C	A	L	E	G	T	V	T	R	Q	I	V
Secondary structure
SS confidence
Disorder				?	?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence		P	S	V	G	Y	G	N	I	N	I	E	H	P	S	G	A	L	D	V	H	L	S	N	E	G	Q	D	A	T	T	L	R	A	S	V	I	R	T	T	R	K	I	F	S	G	E	V	Y	L	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																		?																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3g7k chain D Region: 3 - 350 Aligned: 346 Modelled: 348 Confidence: 100.0% Identity: 38% PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase Phyre2 PDB 2pw0 chain A Region: 2 - 350 Aligned: 345 Modelled: 345 Confidence: 100.0% Identity: 39% PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis Phyre2 PDB 2h9f chain A domain 1 Region: 2 - 167 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 42% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PA0793-like Phyre2 PDB 2h9f chain A domain 2 Region: 170 - 350 Aligned: 181 Modelled: 181 Confidence: 100.0% Identity: 30% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PA0793-like Phyre2 PDB 1w62 chain B Region: 60 - 293 Aligned: 208 Modelled: 213 Confidence: 99.4% Identity: 18% PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) Phyre2 PDB 1tm0 chain A Region: 60 - 228 Aligned: 137 Modelled: 151 Confidence: 98.5% Identity: 26% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Proline racemase Phyre2 PDB 2gkj chain A Region: 60 - 349 Aligned: 224 Modelled: 257 Confidence: 98.4% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap Phyre2 PDB 3edn chain B Region: 1 - 349 Aligned: 278 Modelled: 291 Confidence: 98.1% Identity: 18% PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family Phyre2 PDB 3ekm chain E Region: 60 - 349 Aligned: 234 Modelled: 268 Confidence: 98.0% Identity: 16% PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap Phyre2 PDB 1ym5 chain A Region: 3 - 349 Aligned: 275 Modelled: 307 Confidence: 97.4% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. Phyre2 PDB 1xub chain A domain 1 Region: 194 - 333 Aligned: 101 Modelled: 120 Confidence: 97.3% Identity: 18% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1u1w chain A Region: 11 - 349 Aligned: 257 Modelled: 279 Confidence: 97.2% Identity: 18% PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 Phyre2 PDB 1qy9 chain A domain 1 Region: 188 - 331 Aligned: 106 Modelled: 124 Confidence: 96.4% Identity: 18% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1s7j chain A Region: 93 - 349 Aligned: 190 Modelled: 217 Confidence: 95.9% Identity: 13% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1qy9 chain B Region: 11 - 349 Aligned: 266 Modelled: 283 Confidence: 95.6% Identity: 16% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde Phyre2 PDB 1xub chain A domain 2 Region: 185 - 349 Aligned: 136 Modelled: 147 Confidence: 95.2% Identity: 18% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1qy9 chain A domain 2 Region: 179 - 349 Aligned: 151 Modelled: 171 Confidence: 95.2% Identity: 16% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 3fve chain A Region: 92 - 347 Aligned: 179 Modelled: 196 Confidence: 95.1% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf Phyre2 PDB 2otn chain B Region: 1 - 347 Aligned: 259 Modelled: 312 Confidence: 94.8% Identity: 21% PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis Phyre2 PDB 1u0k chain A domain 1 Region: 228 - 331 Aligned: 88 Modelled: 104 Confidence: 93.4% Identity: 10% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 1 c3g7kD_ 2 c2pw0A_ 3 d2h9fa1 4 d2h9fa2 5 c1w62B_ 6 d1tm0a_ 7 c2gkjA_ 8 c3ednB_ 9 c3ekmE_ 10 c1ym5A_ 11 d1xuba1 12 c1u1wA_ 13 d1qy9a1 14 d1s7ja_ 15 c1qy9B_ 16 d1xuba2 17 d1qy9a2 18 c3fveA_ 19 c2otnB_ 20 d1u0ka1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3g7kD_ 100.0 38 PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase 2 c2pw0A_ 100.0 39 PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis 3 d2h9fa1 100.0 42 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 4 d2h9fa2 100.0 30 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 5 c1w62B_ 99.4 18 PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) 6 d1tm0a_ 98.5 26 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Proline racemase 7 c2gkjA_ 98.4 16 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap 8 c3ednB_ 98.1 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family 9 c3ekmE_ 98.0 16 PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap 10 c1ym5A_ 97.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. 11 d1xuba1 97.3 18 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 12 c1u1wA_ 97.2 18 PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 13 d1qy9a1 96.4 18 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 14 d1s7ja_ 95.9 13 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 15 c1qy9B_ 95.6 16 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde 16 d1xuba2 95.2 18 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 17 d1qy9a2 95.2 16 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 18 c3fveA_ 95.1 18 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf 19 c2otnB_ 94.8 21 PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis 20 d1u0ka1 93.4 10 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 21 d2gkea1 not modelled 93.3 17 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 22 d2gkea2 not modelled 90.2 16 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 23 c2azpA_ not modelled 87.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa1268; PDBTitle: crystal structure of pa1268 solved by sulfur sad 24 c1u0kA_ not modelled 83.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gene product pa4716; PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa 25 c1pyuD_ not modelled 61.1 21 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 26 c3ougA_ not modelled 58.5 36 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 27 c1vc3B_ not modelled 57.5 25 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 28 c1pt1B_ not modelled 56.1 21 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 29 d1ppya_ not modelled 55.7 21 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 30 c2c45F_ not modelled 51.5 32 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 31 d1bk8a_ not modelled 39.2 31 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 32 d1yq2a1 not modelled 36.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 33 d1kl7a_ not modelled 25.5 44 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 34 d1jz8a2 not modelled 25.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 35 d1h6ua1 not modelled 24.7 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 36 d2omza1 not modelled 23.6 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 37 c3opwA_ not modelled 21.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:dna damage-responsive transcriptional repressor rph1; PDBTitle: crystal structure of the rph1 catalytic core 38 d1h6ta1 not modelled 21.2 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Internalin Ig-like domain 39 c2wh7A_ not modelled 17.5 36 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 40 d1w5sa1 not modelled 16.7 46 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 41 d1xhja_ not modelled 14.3 18 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 42 d1ayja_ not modelled 13.8 23 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 43 c4proD_ not modelled 12.8 22 PDB header:serine protease Chain: D: PDB Molecule:alpha-lytic protease; PDBTitle: alpha-lytic protease complexed with pro region 44 d1yuaa1 not modelled 12.7 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 45 d1xpma2 not modelled 12.4 27 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 46 c2qj8B_ not modelled 12.4 18 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 47 d1ee0a2 not modelled 12.2 36 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 48 d1u0ka2 not modelled 12.0 23 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 49 c1yuaA_ not modelled 11.1 29 PDB header:dna binding protein Chain: A: PDB Molecule:topoisomerase i; PDBTitle: c-terminal domain of escherichia coli topoisomerase i 50 c3tsyA_ not modelled 11.0 31 PDB header:ligase, transferase Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein 51 c3muwU_ not modelled 10.9 15 PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus 52 d1bi5a2 not modelled 10.3 36 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 53 d1u0ua2 not modelled 10.3 36 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 54 d1xafa_ not modelled 9.7 20 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 55 d1gpqa_ not modelled 9.1 36 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 56 d1tbxa_ not modelled 8.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F93-like 57 d2b59b2 not modelled 8.5 33 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Pre-dockerin domain 58 c2klxA_ not modelled 8.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 59 c2bs5A_ not modelled 8.2 29 PDB header:sugar binding protein Chain: A: PDB Molecule:fucose-binding lectin protein; PDBTitle: lectin from ralstonia solanacearum complexed with 2-2 fucosyllactose 60 c1uheA_ not modelled 8.0 25 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 61 c3a5iB_ not modelled 7.6 37 PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha 62 d1rv9a_ not modelled 7.5 20 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 63 c3mixA_ not modelled 7.5 45 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha 64 c2d3mA_ not modelled 7.1 25 PDB header:transferase Chain: A: PDB Molecule:pentaketide chromone synthase; PDBTitle: pentaketide chromone synthase complexed with coenzyme a 65 c1txtB_ not modelled 7.0 27 PDB header:lyase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coa synthase; PDBTitle: staphylococcus aureus 3-hydroxy-3-methylglutaryl-coa2 synthase 66 d1gmia_ not modelled 6.8 11 Fold:C2 domain-like Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB) Family:PLC-like (P variant) 67 d2ckca1 not modelled 6.6 35 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 68 c2ckcA_ not modelled 6.6 35 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 69 c3o6xC_ not modelled 6.6 20 PDB header:ligase Chain: C: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis 70 d1ueba1 not modelled 6.3 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 71 d1t8ha_ not modelled 6.2 25 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 72 d1u0ma2 not modelled 6.2 31 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 73 c2ht9A_ not modelled 6.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-2; PDBTitle: the structure of dimeric human glutaredoxin 2 74 d2yvxa3 not modelled 5.9 19 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 75 c3brcA_ not modelled 5.9 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 76 c2xfbI_ not modelled 5.9 20 PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 77 c2zunB_ not modelled 5.9 28 PDB header:hydrolase Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase; PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii 78 d2v0ea1 not modelled 5.8 35 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 79 c3izcG_ not modelled 5.8 17 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 80 c3n43B_ not modelled 5.8 20 PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus. 81 c3n40P_ not modelled 5.7 18 PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus. 82 d1rw0a_ not modelled 5.5 23 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 83 d1b24a2 not modelled 5.3 43 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease 84 d1a77a1 not modelled 5.2 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 85 c3mydA_ not modelled 5.1 32 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori 86 c2xm5A_ not modelled 5.1 29 PDB header:transferase Chain: A: PDB Molecule:cloq; PDBTitle: structural and mechanistic analysis of the magnesium-2 independent aromatic prenyltransferase cloq from the3 clorobiocin biosynthetic pathway 87 c2p8uB_ not modelled 5.1 15 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, cytoplasmic; PDBTitle: crystal structure of human 3-hydroxy-3-methylglutaryl coa synthase i 88 c3lehA_ not modelled 5.1 19 PDB header:transferase Chain: A: PDB Molecule:putative hydroxymethylglutaryl-coa synthase; PDBTitle: the crystal structure of smu.943c from streptococcus mutans ua159

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0