Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	S	N	D	I	L	R	S	V	R	Y	I	L	K	A	N	N	N	D	L	V	R	I	L	A	L	G	N	V	E	A	T	A	E	Q	I	A	V	W	L	R	K	E	D	E	E	G	F	Q	R	C	P	D	I	V	L	S	S	F
Secondary structure
SS confidence
Disorder		?	?																																												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	N	G	L	I	Y	E	K	R	G	K	D	E	S	A	P	A	L	E	P	E	R	R	I	N	N	N	I	V	L	K	K	L	R	I	A	F	S	L	K	T	D	D	I	L	A	I	L	T	E	Q	Q	F	R	V	S	M	P	E	I
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																										?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Sequence		T	A	M	M	R	A	P	D	H	K	N	F	R	E	C	G	D	Q	F	L	R	Y	F	L	R	G	L	A	A	R	Q	H	V	K	K	G
Secondary structure
SS confidence
Disorder								?	?	?	?	?																				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3sib chain A Region: 7 - 141 Aligned: 109 Modelled: 109 Confidence: 86.6% Identity: 13% PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type Phyre2 PDB 1brw chain A domain 1 Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 56.9% Identity: 12% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2tpt chain A domain 1 Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 48.9% Identity: 17% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 3gh1 chain A Region: 95 - 145 Aligned: 40 Modelled: 51 Confidence: 48.4% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae Phyre2 PDB 3bq9 chain A Region: 95 - 145 Aligned: 40 Modelled: 51 Confidence: 48.4% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 Phyre2 PDB 1ldd chain A Region: 35 - 65 Aligned: 31 Modelled: 31 Confidence: 44.4% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: SCF ubiquitin ligase complex WHB domain Phyre2 PDB 2dsj chain A Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 40.1% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 Phyre2 PDB 1uou chain A domain 1 Region: 4 - 41 Aligned: 38 Modelled: 38 Confidence: 38.9% Identity: 21% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 3iz5 chain W Region: 100 - 134 Aligned: 35 Modelled: 35 Confidence: 37.3% Identity: 17% PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1o17 chain A domain 1 Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 37.2% Identity: 20% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 3izc chain W Region: 100 - 134 Aligned: 35 Modelled: 35 Confidence: 35.7% Identity: 20% PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 2fjr chain B Region: 2 - 47 Aligned: 41 Modelled: 46 Confidence: 28.6% Identity: 7% PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 Phyre2 PDB 2w1o chain A Region: 100 - 134 Aligned: 35 Modelled: 35 Confidence: 27.8% Identity: 17% PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 Phyre2 PDB 3h5q chain A Region: 5 - 41 Aligned: 37 Modelled: 37 Confidence: 26.6% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus Phyre2 PDB 2f76 chain X domain 1 Region: 103 - 125 Aligned: 23 Modelled: 23 Confidence: 24.1% Identity: 9% Fold: Retroviral matrix proteins Superfamily: Retroviral matrix proteins Family: Mason-Pfizer monkey virus matrix protein Phyre2 PDB 1n0y chain A Region: 16 - 68 Aligned: 53 Modelled: 53 Confidence: 23.8% Identity: 11% Fold: EF Hand-like Superfamily: EF-hand Family: Calmodulin-like Phyre2 PDB 2k7b chain A Region: 16 - 63 Aligned: 48 Modelled: 48 Confidence: 23.6% Identity: 8% PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain Phyre2 PDB 1sw8 chain A Region: 16 - 61 Aligned: 46 Modelled: 46 Confidence: 23.0% Identity: 9% Fold: EF Hand-like Superfamily: EF-hand Family: Calmodulin-like Phyre2 PDB 1khd chain A domain 1 Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 21.2% Identity: 18% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2elc chain A domain 1 Region: 5 - 41 Aligned: 37 Modelled: 37 Confidence: 19.4% Identity: 11% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 1 c3sibA_ 2 d1brwa1 3 d2tpta1 4 c3gh1A_ 5 c3bq9A_ 6 d1ldda_ 7 c2dsjA_ 8 d1uoua1 9 c3iz5w_ 10 d1o17a1 11 c3izcw_ 12 c2fjrB_ 13 c2w1oA_ 14 c3h5qA_ 15 d2f76x1 16 d1n0ya_ 17 c2k7bA_ 18 d1sw8a_ 19 d1khda1 20 d2elca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sibA_ 86.6 13 PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type 2 d1brwa1 56.9 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 3 d2tpta1 48.9 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 4 c3gh1A_ 48.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 5 c3bq9A_ 48.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 6 d1ldda_ 44.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 7 c2dsjA_ 40.1 27 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 8 d1uoua1 38.9 21 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 9 c3iz5w_ 37.3 17 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 d1o17a1 37.2 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11 c3izcw_ 35.7 20 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 12 c2fjrB_ 28.6 7 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 13 c2w1oA_ 27.8 17 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 14 c3h5qA_ 26.6 11 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 15 d2f76x1 24.1 9 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Mason-Pfizer monkey virus matrix protein 16 d1n0ya_ 23.8 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 17 c2k7bA_ 23.6 8 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 18 d1sw8a_ 23.0 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 19 d1khda1 21.2 18 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d2elca1 19.4 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 c3ctnA_ not modelled 19.2 16 PDB header:calcium-binding protein Chain: A: PDB Molecule:troponin c; PDBTitle: structure of calcium-saturated cardiac troponin c, nmr, 302 structures 22 c1wlzD_ not modelled 18.5 13 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 23 d1wlza1 not modelled 18.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 24 c1o17A_ not modelled 18.3 20 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 25 c2amiA_ not modelled 17.5 13 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 26 c3evrA_ not modelled 17.0 14 PDB header:signaling protein Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent PDBTitle: crystal structure of calcium bound monomeric gcamp2 27 d1sl7a_ not modelled 16.2 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 28 c2kdhA_ not modelled 15.5 16 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate 29 c2l98A_ not modelled 15.5 16 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of trans-resveratrol in complex with the cardiac regulatory2 protein troponin c 30 c3bjaA_ not modelled 15.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 31 c2igpA_ not modelled 14.9 14 PDB header:cell cycle Chain: A: PDB Molecule:retinoblastoma-associated protein hec; PDBTitle: crystal structure of hec1 ch domain 32 d2pq3a1 not modelled 14.7 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 33 d1j55a_ not modelled 14.2 12 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 34 c2vqcA_ not modelled 13.9 42 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 35 d2vqca1 not modelled 13.9 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 36 d1dtla_ not modelled 13.5 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 37 d1xk4c1 not modelled 13.1 15 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 38 d1djxb1 not modelled 12.5 18 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 39 d2fcea1 not modelled 12.4 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 40 c2j0fC_ not modelled 11.9 24 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 41 c2g2bA_ not modelled 11.6 15 PDB header:immune system Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: nmr structure of the human allograft inflammatory factor 1 42 d1wrka1 not modelled 11.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 43 d1fw4a_ not modelled 11.2 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 44 d1m39a_ not modelled 11.1 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 45 d1jc2a_ not modelled 11.1 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 46 c1jc2A_ not modelled 11.1 16 PDB header:structural protein Chain: A: PDB Molecule:troponin c, skeletal muscle; PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i 47 d1v8ga1 not modelled 10.7 16 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 48 c3cecA_ not modelled 10.6 18 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 49 c3oiqB_ not modelled 10.3 27 PDB header:protein binding Chain: B: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of yeast telomere protein cdc13 ob1 and the2 catalytic subunit of dna polymerase alpha pol1 50 d1r2ua_ not modelled 10.1 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 51 d1vi0a2 not modelled 9.6 14 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 52 d1n0yb_ not modelled 9.3 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 53 c3pivA_ not modelled 9.2 17 PDB header:cytokine Chain: A: PDB Molecule:interferon; PDBTitle: zebrafish interferon 1 54 d1eysh2 not modelled 9.2 47 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 55 c2fcdA_ not modelled 9.0 7 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 56 d1mzba_ not modelled 8.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 57 c2o8kA_ not modelled 8.8 12 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 58 c1otpA_ not modelled 8.8 17 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 59 c1irjG_ not modelled 8.5 12 PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps 60 c2b1uA_ not modelled 8.5 18 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 61 c2k6oA_ not modelled 7.9 29 PDB header:antimicrobial protein Chain: A: PDB Molecule:cathelicidin antimicrobial peptide; PDBTitle: human ll-37 structure 62 c1brwB_ not modelled 7.9 15 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 63 d1f54a_ not modelled 7.9 7 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 64 d1avsa_ not modelled 7.8 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 65 c2d58A_ not modelled 7.8 13 PDB header:metal binding protein Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: human microglia-specific protein iba1 66 c2jojA_ not modelled 7.8 11 PDB header:cell cycle Chain: A: PDB Molecule:centrin protein; PDBTitle: nmr solution structure of n-terminal domain of euplotes2 octocarinatus centrin 67 c3jrtA_ not modelled 7.5 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron cassette protein vpc_cass2; PDBTitle: structure from the mobile metagenome of v. paracholerae:2 integron cassette protein vpc_cass2 68 c1ih0A_ not modelled 7.4 16 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of the c-domain of human cardiac troponin c in2 complex with ca2+ sensitizer emd 57033 69 d1ih0a_ not modelled 7.4 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 70 d2csfa1 not modelled 7.1 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 71 d1q5za_ not modelled 6.7 62 Fold:Invasion protein A (SipA) , C-terminal actin binding domain Superfamily:Invasion protein A (SipA) , C-terminal actin binding domain Family:Invasion protein A (SipA) , C-terminal actin binding domain 72 c1q5zA_ not modelled 6.7 62 PDB header:cell invasion Chain: A: PDB Molecule:sipa; PDBTitle: crystal structure of the c-terminal actin binding domain of2 salmonella invasion protein a (sipa) 73 d1cmga_ not modelled 6.7 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 74 c2aaoA_ not modelled 6.7 14 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 75 c1sbjA_ not modelled 6.7 16 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the mg2+-loaded c terminal domain of2 cardiac troponin c bound to the n terminal domain of3 cardiac troponin i 76 c1scvA_ not modelled 6.7 16 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i 77 c1fi5A_ not modelled 6.7 16 PDB header:contractile protein Chain: A: PDB Molecule:protein (troponin c); PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i. 78 d1fi5a_ not modelled 6.7 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 79 d1tn4a_ not modelled 6.6 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 80 c2k2aA_ not modelled 6.6 15 PDB header:contractile protein Chain: A: PDB Molecule:troponin c; PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1 81 d1oqpa_ not modelled 6.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 82 c1ozsA_ not modelled 6.4 11 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i 83 d1xrxa1 not modelled 6.4 67 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 84 c1xrxD_ not modelled 6.4 67 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 85 d1jw2a_ not modelled 6.3 19 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 86 d2p5ka1 not modelled 6.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 87 d1tiza_ not modelled 6.1 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 88 c2e8mA_ not modelled 6.0 27 PDB header:signaling protein Chain: A: PDB Molecule:epidermal growth factor receptor kinase PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8 89 d1lj9a_ not modelled 5.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 90 d1a03a_ not modelled 5.8 10 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 91 c2a4jA_ not modelled 5.7 13 PDB header:structural protein Chain: A: PDB Molecule:centrin 2; PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein 92 d1jjcb2 not modelled 5.7 19 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 93 c2ktgA_ not modelled 5.5 9 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 94 d1b4aa1 not modelled 5.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 95 c2bcwC_ not modelled 5.4 20 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: coordinates of the n-terminal domain of ribosomal protein2 l11,c-terminal domain of ribosomal protein l7/l12 and a3 portion of the g' domain of elongation factor g, as fitted4 into cryo-em map of an escherichia coli 70s*ef-5 g*gdp*fusidic acid complex 96 d1fi4a1 not modelled 5.4 22 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 97 d1f9na1 not modelled 5.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 98 d1np8a_ not modelled 5.3 12 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 99 d1ap4a_ not modelled 5.2 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0