PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3jrtA_

Fold library id	PDB Header	Molecule	Title
c3jrtA_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: integron cassette protein vpc_cass2;	PDBTitle: structure from the mobile metagenome of v. paracholerae:2 integron cassette protein vpc_cass2

Links to external resources
Added to library: Sat Aug 28 22:24:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G V K X S D K W I E I E E I L S G L I G D L T I A V T V L K D Y E G K A F L R E P Q H Q T K R Q C I W R L C V Y S I V I N C R K Y V E L N Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
G G G G S G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K Y G K E I P G H N H I R G V Y N N E I N K N T A I K K L R N H C V A H V S D K S K Y L K P A E V Q E E I I K X F D G N F A D E F L D W I C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
T T
T T S
T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . .

Sequence P D N I S T T D K S E S L V G V I E L L R D A V S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S
G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	V	K	X	S	D	K	W	I	E	I	E	E	I	L	S	G	L	I	G	D	L	T	I	A	V	T	V	L	K	D	Y	E	G	K	A	F	L	R	E	P	Q	H	Q	T	K	R	Q	C	I	W	R	L	C	V	Y	S	I	V	I	N	C	R	K	Y	V	E	L	N	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T		G	G	G	G	S	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	Y	G	K	E	I	P	G	H	N	H	I	R	G	V	Y	N	N	E	I	N	K	N	T	A	I	K	K	L	R	N	H	C	V	A	H	V	S	D	K	S	K	Y	L	K	P	A	E	V	Q	E	E	I	I	K	X	F	D	G	N	F	A	D	E	F	L	D	W	I	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G																										S		T	T		T	T	S																T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Sequence	P	D	N	I	S	T	T	D	K	S	E	S	L	V	G	V	I	E	L	L	R	D	A	V	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T	S	S		G	G	G	S