Email l.a.kelley@imperial.ac.uk Description P75962 Date Thu Jan 5 12:16:31 GMT 2012 Unique Job ID 59e0f300f52ffc77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kluA_ 87.9 20 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 2 c3db3A_ 86.2 17 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide 3 d1bcoa1 79.3 19 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 4 c2jp3A_ 76.4 14 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 5 c2l2tA_ 50.6 28 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 6 c1bcoA_ 50.2 19 PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain 7 c2jqoA_ 32.2 19 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein yoba; PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547 8 c1afoB_ 31.9 18 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 9 c2jo1A_ 29.2 17 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 10 c1kqfB_ 25.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 11 c2k52A_ 22.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 12 d1v43a2 21.8 13 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 13 c3f1zF_ 20.6 31 PDB header:dna binding protein Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein; PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution 14 d1ugpb_ 19.5 18 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 15 c3dwqD_ 16.5 43 PDB header:toxin Chain: D: PDB Molecule:subtilase cytotoxin, subunit b; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli with neu5gc-2,3gal-1,3glcnac 16 c2l0cA_ 16.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative membrane protein; PDBTitle: solution nmr structure of protein sty4237 (residues 36-120) from2 salmonella enterica, northeast structural genomics consortium target3 slr115 17 d1y5ic1 15.7 18 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 18 c3qz9D_ 15.6 18 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 19 d2ahob2 14.8 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 c2dxcG_ 14.3 11 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 21 c3kdpH_ not modelled 14.1 26 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 22 c3kdpG_ not modelled 14.1 26 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 23 d1v29b_ not modelled 13.5 7 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 24 c2ky9A_ not modelled 13.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ydhk; PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518 25 d2qdyb1 not modelled 12.6 15 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 26 d1vqoq1 not modelled 12.2 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 27 d2e74f1 not modelled 11.9 20 Fold:Single transmembrane helix Superfamily:PetM subunit of the cytochrome b6f complex Family:PetM subunit of the cytochrome b6f complex 28 c2kpeB_ not modelled 11.0 17 PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 29 c2kpeA_ not modelled 11.0 17 PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 30 c1s1iQ_ not modelled 10.9 14 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 31 c3i4oA_ not modelled 10.3 32 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 32 d1wjsa_ not modelled 10.3 19 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 33 c2qtsA_ not modelled 10.3 12 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 34 d3d31a1 not modelled 10.3 9 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 35 c2zkrq_ not modelled 9.3 20 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 36 d1hr0w_ not modelled 9.2 37 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 37 c2kncA_ not modelled 9.0 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 c3cm1C_ not modelled 8.4 19 PDB header:cell cycle Chain: C: PDB Molecule:ssga-like sporulation-specific cell division protein; PDBTitle: crystal structure of ssga-like sporulation-specific cell division2 protein (yp_290167.1) from thermobifida fusca yx-er1 at 2.60 a3 resolution 39 d2k5qa1 not modelled 8.3 9 Fold:OB-fold Superfamily:BC4932-like Family:BC4932-like 40 d1fvia1 not modelled 8.0 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 41 d1fftb2 not modelled 7.6 11 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 42 c2ahoB_ not modelled 7.6 11 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: structure of the archaeal initiation factor eif2 alpha-2 gamma heterodimer from sulfolobus solfataricus complexed3 with gdpnp 43 c2k1aA_ not modelled 7.6 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 44 d1h9ra2 not modelled 7.5 15 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 45 c2jwaA_ not modelled 7.5 9 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 46 c3j0cH_ not modelled 7.5 11 PDB header:virus Chain: H: PDB Molecule:e2 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map 47 d1qcsa1 not modelled 7.3 32 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 48 d1f20a1 not modelled 7.1 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like 49 c2zxeG_ not modelled 6.7 17 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 50 c2e6zA_ not modelled 6.7 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 51 c2xzn2_ not modelled 6.5 27 PDB header:ribosome Chain: 2: PDB Molecule:40s ribosomal protein s8; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 52 d1y14b1 not modelled 6.3 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c2zklA_ not modelled 6.3 17 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 54 d1h9ma2 not modelled 6.3 6 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 55 c2ks1B_ not modelled 6.2 11 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 56 d1h6la_ not modelled 6.2 18 Fold:6-bladed beta-propeller Superfamily:Thermostable phytase (3-phytase) Family:Thermostable phytase (3-phytase) 57 c3u5cI_ not modelled 6.0 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s8-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 58 c4a1aP_ not modelled 6.0 14 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 59 c3iz5U_ not modelled 6.0 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 c1vf5G_ not modelled 5.8 21 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 61 d1vf5g_ not modelled 5.8 21 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 62 c1ddiA_ not modelled 5.7 8 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha- PDBTitle: crystal structure of sir-fp60 63 c2k21A_ not modelled 5.6 13 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 64 d3bn0a1 not modelled 5.5 15 Fold:Ribosomal protein S16 Superfamily:Ribosomal protein S16 Family:Ribosomal protein S16 65 c2kcyA_ not modelled 5.5 25 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d 66 c2kcoA_ not modelled 5.5 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s8e; PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4. 67 c1fftG_ not modelled 5.4 14 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 68 c3izcU_ not modelled 5.3 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 69 d1q46a2 not modelled 5.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 70 d1oi1a2 not modelled 5.3 12 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 71 d1g2914 not modelled 5.2 16 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 72 c2khjA_ not modelled 5.2 21 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 73 d2e74g1 not modelled 5.2 19 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 74 c2khiA_ not modelled 5.1 29 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1