Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	L	A	T	L	L	L	S	L	A	V	L	I	T	A	G	C	G	W	H	L	R	D	T	T	Q	V	P	S	T	M	K	V	M	I	L	D	S	G	D	P	N	G	P	L	S	R	A	V	R	N	Q	L	R	L	N	G	V
Secondary structure
SS confidence
Disorder		?	?	?																										?	?											?	?	?	?	?													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	L	D	K	E	T	T	R	K	D	V	P	S	L	R	L	G	K	V	S	I	A	K	D	T	A	S	V	F	R	N	G	Q	T	A	E	Y	Q	M	I	M	T	V	N	A	T	V	L	I	P	G	R	D	I	Y	P	I	S	A
Secondary structure
SS confidence
Disorder				?	?	?					?										?	?	?																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	V	F	R	S	F	F	D	N	P	Q	M	A	L	A	K	D	N	E	Q	D	M	I	V	K	E	M	Y	D	R	A	A	E	Q	L	I	R	K	L	P	S	I	R	A	A	D	I	R	S	D	E	E	Q	T	S	T	T	T	D	T
Secondary structure
SS confidence
Disorder											?	?	?		?	?																											?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.
Sequence		P	A	T	P	A	R	V	S	T	T	L	G	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jxp chain A Region: 19 - 168 Aligned: 146 Modelled: 150 Confidence: 100.0% Identity: 16% PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein b; PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a Phyre2 PDB 2r76 chain A Region: 34 - 168 Aligned: 132 Modelled: 135 Confidence: 100.0% Identity: 34% PDB header:lipoprotein Chain: A: PDB Molecule:rare lipoprotein b; PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a Phyre2 PDB 3bf2 chain A Region: 31 - 165 Aligned: 124 Modelled: 135 Confidence: 100.0% Identity: 27% PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of the a1ksw9_neimf protein from2 neisseria meningitidis. northeast structural genomics3 consortium target mr36a Phyre2 PDB 3oqt chain P Region: 33 - 111 Aligned: 65 Modelled: 67 Confidence: 35.9% Identity: 17% PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis Phyre2 PDB 2x5e chain A Region: 18 - 22 Aligned: 5 Modelled: 5 Confidence: 35.3% Identity: 60% PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa Phyre2 PDB 1xw8 chain A Region: 18 - 22 Aligned: 5 Modelled: 5 Confidence: 34.6% Identity: 60% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 3onr chain I Region: 33 - 112 Aligned: 66 Modelled: 80 Confidence: 30.2% Identity: 14% PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site Phyre2 PDB 2vxa chain L Region: 33 - 108 Aligned: 62 Modelled: 76 Confidence: 30.0% Identity: 24% PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin Phyre2 PDB 2ux9 chain A domain 1 Region: 33 - 108 Aligned: 62 Modelled: 76 Confidence: 29.4% Identity: 19% Fold: Dodecin subunit-like Superfamily: Dodecin-like Family: Dodecin-like Phyre2 PDB 1zlq chain A domain 1 Region: 15 - 63 Aligned: 49 Modelled: 49 Confidence: 18.4% Identity: 12% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2dfa chain A domain 1 Region: 29 - 64 Aligned: 34 Modelled: 36 Confidence: 18.2% Identity: 29% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 2obk chain E Region: 17 - 24 Aligned: 8 Modelled: 8 Confidence: 17.7% Identity: 50% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain; PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6. Phyre2 PDB 1v6t chain A Region: 12 - 67 Aligned: 56 Modelled: 56 Confidence: 17.6% Identity: 13% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 3mgj chain A Region: 6 - 69 Aligned: 62 Modelled: 64 Confidence: 16.6% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. Phyre2 PDB 2ojl chain B Region: 17 - 24 Aligned: 8 Modelled: 8 Confidence: 16.5% Identity: 50% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. Phyre2 PDB 2grv chain C Region: 15 - 62 Aligned: 48 Modelled: 48 Confidence: 15.7% Identity: 17% PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Phyre2 PDB 1a6c chain A domain 3 Region: 12 - 22 Aligned: 11 Modelled: 11 Confidence: 15.7% Identity: 36% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Comoviridae-like VP Phyre2 PDB 3dex chain A Region: 17 - 24 Aligned: 8 Modelled: 8 Confidence: 15.5% Identity: 38% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. Phyre2 PDB 2knc chain A Region: 6 - 25 Aligned: 20 Modelled: 20 Confidence: 15.2% Identity: 35% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2vsv chain B Region: 17 - 50 Aligned: 27 Modelled: 34 Confidence: 14.6% Identity: 30% PDB header:protein-binding Chain: B: PDB Molecule:rhophilin-2; PDBTitle: crystal structure of the pdz domain of human rhophilin-2 Phyre2 1 c2jxpA_ 2 c2r76A_ 3 c3bf2A_ 4 c3oqtP_ 5 c2x5eA_ 6 d1xw8a_ 7 c3onrI_ 8 c2vxaL_ 9 d2ux9a1 10 d1zlqa1 11 d2dfaa1 12 c2obkE_ 13 d1v6ta_ 14 c3mgjA_ 15 c2ojlB_ 16 c2grvC_ 17 d1a6ca3 18 c3dexA_ 19 c2kncA_ 20 c2vsvB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jxpA_ 100.0 16 PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein b; PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a 2 c2r76A_ 100.0 34 PDB header:lipoprotein Chain: A: PDB Molecule:rare lipoprotein b; PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a 3 c3bf2A_ 100.0 27 PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of the a1ksw9_neimf protein from2 neisseria meningitidis. northeast structural genomics3 consortium target mr36a 4 c3oqtP_ 35.9 17 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 5 c2x5eA_ 35.3 60 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 6 d1xw8a_ 34.6 60 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 7 c3onrI_ 30.2 14 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 8 c2vxaL_ 30.0 24 PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin 9 d2ux9a1 29.4 19 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 10 d1zlqa1 18.4 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 11 d2dfaa1 18.2 29 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 12 c2obkE_ 17.7 50 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain; PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6. 13 d1v6ta_ 17.6 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 14 c3mgjA_ 16.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. 15 c2ojlB_ 16.5 50 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 16 c2grvC_ 15.7 17 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 17 d1a6ca3 15.7 36 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 18 c3dexA_ 15.5 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 19 c2kncA_ 15.2 35 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 20 c2vsvB_ 14.6 30 PDB header:protein-binding Chain: B: PDB Molecule:rhophilin-2; PDBTitle: crystal structure of the pdz domain of human rhophilin-2 21 d2fa8a1 not modelled 14.1 50 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 22 d1b8qa_ not modelled 14.0 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 23 c2p0gB_ not modelled 13.9 50 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 24 c3od1A_ not modelled 13.8 9 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase regulatory subunit; PDBTitle: the crystal structure of an atp phosphoribosyltransferase regulatory2 subunit/histidyl-trna synthetase from bacillus halodurans c 25 c2pxgA_ not modelled 13.3 50 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein; PDBTitle: nmr solution structure of omla 26 d1x61a2 not modelled 13.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 27 d2fnea1 not modelled 13.1 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 28 d1nn4a_ not modelled 12.7 26 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 29 c3s5pA_ not modelled 12.1 24 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 30 c2a40F_ not modelled 11.8 60 PDB header:structural protein Chain: F: PDB Molecule:wiskott-aldrich syndrome protein family member 2; PDBTitle: ternary complex of the wh2 domain of wave with actin-dnase i 31 c2a40C_ not modelled 11.8 60 PDB header:structural protein Chain: C: PDB Molecule:wiskott-aldrich syndrome protein family member 2; PDBTitle: ternary complex of the wh2 domain of wave with actin-dnase i 32 c2v90E_ not modelled 10.4 26 PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3) 33 d2ex2a1 not modelled 9.8 11 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 34 c1iclA_ not modelled 9.6 42 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 35 c3ol0C_ not modelled 9.0 50 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 36 d1qbea_ not modelled 8.9 21 Fold:RNA bacteriophage capsid protein Superfamily:RNA bacteriophage capsid protein Family:RNA bacteriophage capsid protein 37 c3lvuB_ not modelled 8.5 8 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi 38 d2c7na1 not modelled 8.3 75 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:A20-like zinc finger 39 c2db5A_ not modelled 8.3 13 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein 40 c2c7mA_ not modelled 7.9 75 PDB header:protein-binding Chain: A: PDB Molecule:rab guanine nucleotide exchange factor 1; PDBTitle: human rabex-5 residues 1-74 in complex with ubiquitin 41 c3v2gA_ not modelled 7.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] reductase; PDBTitle: crystal structure of a dehydrogenase/reductase from sinorhizobium2 meliloti 1021 42 d1hu3a_ not modelled 7.7 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:MIF4G domain-like 43 c3ghfA_ not modelled 7.7 18 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 44 c2kzyA_ not modelled 7.2 75 PDB header:metal binding protein Chain: A: PDB Molecule:zfand5 protein (zinc finger protein 216 (predicted), PDBTitle: solution nmr structure of the znf216 a20 zinc finger 45 d1vpta_ not modelled 7.1 38 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:mRNA cap methylase 46 d2ccqa1 not modelled 7.1 13 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 47 d1g9oa_ not modelled 7.1 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 48 c2fgyA_ not modelled 6.9 38 PDB header:lyase Chain: A: PDB Molecule:carboxysome shell polypeptide; PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca) 49 d1uf2c1 not modelled 6.8 67 Fold:A virus capsid protein alpha-helical domain Superfamily:A virus capsid protein alpha-helical domain Family:Phytoreovirus capsid 50 c1vp3A_ not modelled 6.6 38 PDB header:methyltransferase Chain: A: PDB Molecule:vp39; PDBTitle: vaccinia virus protein vp39 in complex with s-adenosylhomocysteine 51 c1v39A_ not modelled 6.6 38 PDB header:methyltransferase Chain: A: PDB Molecule:vp39; PDBTitle: dc26 mutant of vaccinia virus protein vp39 in complex with s-2 adenosylhomocysteine and m7g(5')pppg 52 c2k1aA_ not modelled 6.6 32 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 53 c3k7pA_ not modelled 6.6 10 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 54 c3m1pA_ not modelled 6.6 10 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 55 c3l3bA_ not modelled 6.6 67 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 56 c2iwnA_ not modelled 6.3 17 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target) 57 c3ftoA_ not modelled 6.3 15 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 58 c3ry3B_ not modelled 6.3 21 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 59 d1w5da1 not modelled 6.3 12 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 60 d1ncfa3 not modelled 6.1 43 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 61 c1ztyA_ not modelled 6.1 12 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 62 c2ogpA_ not modelled 5.8 10 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of the second pdz domain of par-3 63 c3j00Z_ not modelled 5.8 18 PDB header:ribosome/ribosomal protein Chain: Z: PDB Molecule:cell division protein ftsq; PDBTitle: structure of the ribosome-secye complex in the membrane environment 64 d1um1a_ not modelled 5.7 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 65 d1vp8a_ not modelled 5.7 30 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 66 d1jjcb5 not modelled 5.6 25 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 67 c1vdfB_ not modelled 5.6 13 PDB header:extracellular matrix protein Chain: B: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: assembly domain of cartilage oligomeric matrix protein 68 d2d5ua1 not modelled 5.6 13 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 69 c2npbA_ not modelled 5.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 70 c2iwoA_ not modelled 5.5 13 PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 12th pdz domain of multiple pdz domain protein mpdz (casp2 target) 71 d1k32a1 not modelled 5.5 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Tail specific protease PDZ domain 72 d2vvpa1 not modelled 5.4 20 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 73 c3he8A_ not modelled 5.1 23 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 74 c2kr1A_ not modelled 5.1 38 PDB header:ligase Chain: A: PDB Molecule:ubiquitin protein ligase e3a; PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662 75 d2d9ia1 not modelled 5.1 21 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0