Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	K	R	L	M	M	V	A	L	L	V	I	A	P	L	S	A	A	T	A	A	D	Q	T	N	P	Y	K	L	M	D	E	A	A	Q	K	T	F	D	R	L	K	N	E	Q	P	Q	I	R	A	N	P	D	Y	L	R	T	I	V
Secondary structure
SS confidence
Disorder		?	?														?	?	?	?	?	?	?	?	?		?																		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Q	E	L	L	P	Y	V	Q	V	K	Y	A	G	A	L	V	L	G	Q	Y	Y	K	S	A	T	P	A	Q	R	E	A	Y	F	A	A	F	R	E	Y	L	K	Q	A	Y	G	Q	A	L	A	M	Y	H	G	Q	T	Y	Q	I	A
Secondary structure
SS confidence
Disorder																					?					?																												?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	E	Q	P	L	G	D	K	T	I	V	P	I	R	V	T	I	I	D	P	N	G	R	P	P	V	R	L	D	F	Q	W	R	K	N	S	Q	T	G	N	W	Q	A	Y	D	M	I	A	E	G	V	S	M	I	T	T	K	Q	N	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Sequence		W	G	T	L	L	R	T	K	G	I	D	G	L	T	A	Q	L	K	S	I	S	Q	Q	K	I	T	L	E	E	K	K
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qgu chain A Region: 25 - 205 Aligned: 177 Modelled: 181 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 Phyre2 PDB 2co9 chain A Region: 66 - 112 Aligned: 45 Modelled: 47 Confidence: 86.7% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse Phyre2 PDB 1k99 chain A Region: 66 - 115 Aligned: 48 Modelled: 50 Confidence: 86.5% Identity: 21% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 1j46 chain A Region: 66 - 113 Aligned: 46 Modelled: 48 Confidence: 84.2% Identity: 20% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 1v63 chain A Region: 56 - 112 Aligned: 55 Modelled: 57 Confidence: 84.2% Identity: 18% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 1v8g chain A domain 1 Region: 37 - 100 Aligned: 61 Modelled: 64 Confidence: 83.5% Identity: 13% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 3fgh chain A Region: 77 - 113 Aligned: 36 Modelled: 36 Confidence: 83.3% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b Phyre2 PDB 2yul chain A Region: 66 - 104 Aligned: 38 Modelled: 39 Confidence: 83.0% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 Phyre2 PDB 2crj chain A Region: 66 - 112 Aligned: 45 Modelled: 47 Confidence: 82.9% Identity: 22% PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 Phyre2 PDB 1hmf chain A Region: 66 - 115 Aligned: 48 Modelled: 50 Confidence: 82.8% Identity: 21% PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 Phyre2 PDB 1hmf chain A Region: 66 - 115 Aligned: 48 Modelled: 50 Confidence: 82.8% Identity: 21% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 1khd chain A domain 1 Region: 36 - 99 Aligned: 61 Modelled: 64 Confidence: 81.8% Identity: 10% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2lef chain A Region: 66 - 113 Aligned: 46 Modelled: 48 Confidence: 81.7% Identity: 13% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2tpt chain A domain 1 Region: 35 - 99 Aligned: 62 Modelled: 65 Confidence: 81.6% Identity: 15% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1uou chain A domain 1 Region: 35 - 100 Aligned: 63 Modelled: 66 Confidence: 81.0% Identity: 10% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2eqz chain A Region: 77 - 113 Aligned: 36 Modelled: 37 Confidence: 80.4% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 Phyre2 PDB 3u2b chain C Region: 66 - 113 Aligned: 46 Modelled: 48 Confidence: 80.3% Identity: 13% PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna Phyre2 PDB 1lwm chain A Region: 66 - 112 Aligned: 45 Modelled: 47 Confidence: 79.9% Identity: 27% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2e6o chain A Region: 66 - 104 Aligned: 38 Modelled: 39 Confidence: 79.4% Identity: 16% PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 Phyre2 PDB 1ckt chain A Region: 68 - 112 Aligned: 43 Modelled: 45 Confidence: 79.3% Identity: 12% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 1 c2qguA_ 2 c2co9A_ 3 d1k99a_ 4 d1j46a_ 5 d1v63a_ 6 d1v8ga1 7 c3fghA_ 8 c2yulA_ 9 c2crjA_ 10 c1hmfA_ 11 d1hmfa_ 12 d1khda1 13 d2lefa_ 14 d2tpta1 15 d1uoua1 16 c2eqzA_ 17 c3u2bC_ 18 d1lwma_ 19 c2e6oA_ 20 d1ckta_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qguA_ 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 2 c2co9A_ 86.7 18 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 3 d1k99a_ 86.5 21 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 4 d1j46a_ 84.2 20 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 5 d1v63a_ 84.2 18 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 6 d1v8ga1 83.5 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 7 c3fghA_ 83.3 11 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 8 c2yulA_ 83.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 9 c2crjA_ 82.9 22 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 10 c1hmfA_ 82.8 21 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 11 d1hmfa_ 82.8 21 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 12 d1khda1 81.8 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 13 d2lefa_ 81.7 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 14 d2tpta1 81.6 15 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 15 d1uoua1 81.0 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 16 c2eqzA_ 80.4 11 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 17 c3u2bC_ 80.3 13 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 18 d1lwma_ 79.9 27 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 19 c2e6oA_ 79.4 16 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 20 d1ckta_ 79.3 12 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 21 c2cs1A_ not modelled 78.7 13 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 22 d1vqqa1 not modelled 77.7 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Penicillin binding protein 2a (PBP2A), N-terminal domain 23 d1brwa1 not modelled 77.6 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 24 d2gzka2 not modelled 77.4 19 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 25 d3cnxa1 not modelled 77.3 11 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 26 c2d7lA_ not modelled 76.4 5 PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 27 d1gt0d_ not modelled 76.3 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 28 d1o17a1 not modelled 74.6 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 29 c1hrzA_ not modelled 74.6 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr 30 c1hryA_ not modelled 74.4 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr 31 d1j3xa_ not modelled 74.0 4 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 32 c1j3xA_ not modelled 74.0 4 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 33 c3tq6B_ not modelled 73.7 11 PDB header:transcription/dna Chain: B: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription factor a, tfam2 or mttfa, bound to the light strand promoter lsp 34 c3k7cC_ not modelled 73.3 12 PDB header:protein binding Chain: C: PDB Molecule:putative ntf2-like transpeptidase; PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution 35 c3epvB_ not modelled 72.9 11 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 36 d1aaba_ not modelled 70.0 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 37 c1aabA_ not modelled 70.0 11 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein; PDBTitle: nmr structure of rat hmg1 hmga fragment 38 c1khdD_ not modelled 69.5 10 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 39 d1i11a_ not modelled 68.5 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 40 d1j3da_ not modelled 67.5 23 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 41 d1hsma_ not modelled 66.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 42 c1wz6A_ not modelled 65.3 18 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 43 d1v64a_ not modelled 64.8 20 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 44 c1brwB_ not modelled 64.0 13 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 45 c3qzcA_ not modelled 63.5 15 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 46 c1wx2A_ not modelled 62.7 12 PDB header:oxidoreductase/metal transport Chain: A: PDB Molecule:tyrosinase; PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of hydrogenperoxide 47 c1v8gB_ not modelled 61.9 13 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 48 d1lnla1 not modelled 61.8 24 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 49 c1wxlA_ not modelled 61.1 17 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand recognition protein; PDBTitle: solution structure of the hmg-box domain in the ssrp12 subunit of fact 50 d1wgfa_ not modelled 60.5 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 51 c3h5qA_ not modelled 59.6 11 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 52 c3l6wB_ not modelled 59.6 14 PDB header:oxygen binding Chain: B: PDB Molecule:hemocyanin 1; PDBTitle: structure of the collar functional unit (klh1-h) of keyhole2 limpet hemocyanin 53 c3oeoD_ not modelled 59.3 15 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 54 c1otpA_ not modelled 59.3 14 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 55 c1vquB_ not modelled 59.2 10 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 56 c2j0fC_ not modelled 58.8 10 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 57 d1js8a1 not modelled 57.5 19 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 58 c1lnlB_ not modelled 56.7 24 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemocyanin; PDBTitle: structure of deoxygenated hemocyanin from rapana thomasiana 59 c2bpqB_ not modelled 56.6 11 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 60 c3gwrA_ not modelled 55.4 11 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution 61 c1js8A_ not modelled 54.2 17 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemocyanin; PDBTitle: structure of a functional unit from octopus hemocyanin 62 c3o39A_ not modelled 54.1 15 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 63 d3bb9a1 not modelled 53.8 15 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 64 c3npyB_ not modelled 53.4 4 PDB header:oxidoreductase Chain: B: PDB Molecule:tyrosinase; PDBTitle: crystal structure of tyrosinase from bacillus megaterium soaked in2 cuso4 65 c2yrqA_ not modelled 50.4 22 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein b1; PDBTitle: solution structure of the tandem hmg box domain from human2 high mobility group protein b1 66 c1o17A_ not modelled 49.8 13 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 67 c3ke7A_ not modelled 48.5 5 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution 68 c3evyB_ not modelled 48.4 18 PDB header:hydrolase Chain: B: PDB Molecule:putative type i restriction enzyme r protein; PDBTitle: crystal structure of a fragment of a putative type i2 restriction enzyme r protein from bacteroides fragilis 69 c2gzkA_ not modelled 47.5 20 PDB header:dna/structural protein Chain: A: PDB Molecule:sex-determining region on y / hmgb1; PDBTitle: structure of a complex of tandem hmg boxes and dna 70 c1ye9E_ not modelled 44.5 20 PDB header:oxidoreductase Chain: E: PDB Molecule:catalase hpii; PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli 71 c3itfA_ not modelled 44.4 15 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 72 c3qk9B_ not modelled 43.0 9 PDB header:protein transport Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3 73 c3bqsB_ not modelled 42.7 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 74 d2r4ia1 not modelled 41.3 15 Fold:Cystatin-like Superfamily:NTF2-like Family:CHU142-like 75 d3cu3a1 not modelled 37.9 9 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 76 c3dukD_ not modelled 35.6 16 PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution 77 c2dsjA_ not modelled 35.1 8 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 78 c2lhjA_ not modelled 34.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:high mobility group protein homolog nhp1; PDBTitle: nmr structure of the high mobility group protein-like protein nhp12 from babesia bovis t2bo (baboa.00841.a) 79 c3fkaD_ not modelled 30.4 16 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution 80 d2cw9a1 not modelled 30.0 10 Fold:Cystatin-like Superfamily:NTF2-like Family:TIM44-like 81 c3m20A_ not modelled 26.4 8 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 82 d2owpa1 not modelled 26.1 9 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 83 c3kspA_ not modelled 24.6 13 PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution 84 c2ia5C_ not modelled 24.5 11 PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. 85 d1c07a_ not modelled 23.4 22 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 86 c3robC_ not modelled 23.0 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 87 d1ueab_ not modelled 21.5 20 Fold:OB-fold Superfamily:TIMP-like Family:Tissue inhibitor of metalloproteinases, TIMP 88 c3a16C_ not modelled 21.4 24 PDB header:lyase Chain: C: PDB Molecule:aldoxime dehydratase; PDBTitle: crystal structure of aldoxime dehydratase (oxdre) in complex2 with propionaldoxime 89 d1w8ia_ not modelled 21.4 38 Fold:PIN domain-like Superfamily:PIN domain-like Family:PIN domain 90 c2kgrA_ not modelled 21.0 17 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a 91 d2juza1 not modelled 20.0 21 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 92 d1otfa_ not modelled 19.0 16 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 93 c3ry0A_ not modelled 18.9 13 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 94 d2gxfa1 not modelled 18.8 17 Fold:Cystatin-like Superfamily:NTF2-like Family:YybH-like 95 d1gyxa_ not modelled 18.6 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 96 d1bjpa_ not modelled 18.3 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 97 d1qrva_ not modelled 18.1 20 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 98 c3chtA_ not modelled 17.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase; PDBTitle: crystal structure of di-iron aurf with partially bound ligand 99 c3ej6D_ not modelled 17.7 20 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure

Binding site prediction

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Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0