Email l.a.kelley@imperial.ac.uk Description P60872 Date Thu Jan 5 12:07:13 GMT 2012 Unique Job ID 5843cebe03b081a4

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vcta2 99.5 19 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 2 d2fy8a2 99.5 22 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 3 c2bknA_ 99.4 19 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein 4 c3jxoB_ 99.1 26 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 5 c2fy8A_ 99.0 22 PDB header:transport protein Chain: A: PDB Molecule:calcium-gated potassium channel mthk; PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form 6 c1lnqC_ 99.0 23 PDB header:metal transport Chain: C: PDB Molecule:potassium channel related protein; PDBTitle: crystal structure of mthk at 3.3 a 7 c3l4bG_ 98.3 28 PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 8 c3mt5A_ 97.5 11 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:potassium large conductance calcium-activated channel, PDBTitle: crystal structure of the human bk gating apparatus 9 c3u6nC_ 97.3 11 PDB header:transport protein Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein; PDBTitle: open structure of the bk channel gating ring 10 c3nafA_ 86.1 17 PDB header:ion transport Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1; PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel) 11 c2ka9A_ 75.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide 12 d1zud21 72.1 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 13 c2w8iG_ 67.3 20 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 14 c2j58G_ 64.7 20 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 15 d2cu3a1 64.2 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 16 c2kl0A_ 63.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 17 c2zc3F_ 58.5 9 PDB header:biosynthetic protein Chain: F: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae 18 c3cwiA_ 58.3 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 19 d1rp5a2 57.5 15 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 20 c3r0hA_ 53.9 17 PDB header:peptide binding protein Chain: A: PDB Molecule:inactivation-no-after-potential d protein; PDBTitle: structure of inad pdz45 in complex with ng2 peptide 21 d1tygb_ not modelled 53.6 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 22 d1pyya2 not modelled 51.4 13 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 23 c1tygG_ not modelled 49.6 10 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 24 d1k25a2 not modelled 48.8 13 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 25 d1k25a1 not modelled 47.8 12 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 26 d1pyya1 not modelled 45.6 8 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 27 c2anrA_ not modelled 45.1 14 PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin 28 d1r61a_ not modelled 34.6 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Putative cyclase Family:Putative cyclase 29 c1u3bA_ not modelled 30.4 12 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 30 c2dazA_ not modelled 29.1 13 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein 31 c2c2xB_ not modelled 27.8 10 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 32 c2qndA_ not modelled 27.3 19 PDB header:rna binding protein Chain: A: PDB Molecule:fmr1 protein; PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein 33 c3krmB_ not modelled 25.5 14 PDB header:rna binding protein Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein PDBTitle: imp1 kh34 34 d1v62a_ not modelled 23.8 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 35 d1wpga1 not modelled 21.5 19 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 36 c3tl6B_ not modelled 21.0 12 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 37 d1v6ba_ not modelled 20.6 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 38 c2eehA_ not modelled 19.9 12 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 39 d1x6da1 not modelled 19.7 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 40 d1sdwa2 not modelled 19.4 21 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Peptidylglycine alpha-hydroxylating monooxygenase, PHM 41 c2hc8A_ not modelled 18.5 21 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 42 d2h1qa1 not modelled 18.2 23 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 43 d2i0ia1 not modelled 17.4 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 44 c2kegA_ not modelled 17.4 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:plnk; PDBTitle: nmr structure of plantaricin k in dpc-micelles 45 c2jkdB_ not modelled 16.7 26 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 46 c1yj5C_ not modelled 16.2 38 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 47 d1pm3a_ not modelled 16.0 19 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:MTH1895 48 d1y7ma2 not modelled 15.8 24 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 49 c2jvzA_ not modelled 15.7 20 PDB header:splicing Chain: A: PDB Molecule:far upstream element-binding protein 2; PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp 50 d1edza1 not modelled 15.1 6 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 51 c2djtA_ not modelled 15.0 10 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structures of the pdz domain of human unnamed2 protein product 52 d1ky9a1 not modelled 14.9 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 53 d2ix0a3 not modelled 14.8 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 54 c2fpeB_ not modelled 14.6 12 PDB header:signaling protein Chain: B: PDB Molecule:c-jun-amino-terminal kinase interacting protein PDBTitle: conserved dimerization of the ib1 src-homology 3 domain 55 c3kt9A_ not modelled 14.2 24 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 56 d2piaa1 not modelled 13.9 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 57 c2xlkB_ not modelled 13.7 16 PDB header:hydrolase/rna Chain: B: PDB Molecule:csy4 endoribonuclease; PDBTitle: crystal structure of the csy4-crrna complex, orthorhombic form 58 c2dmzA_ not modelled 13.7 9 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the third pdz domain of human inad-2 like protein 59 d1yjma1 not modelled 13.6 38 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 60 d1ujxa_ not modelled 13.5 41 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 61 d1vhwa_ not modelled 13.4 25 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 62 c2yt7A_ not modelled 13.2 10 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 63 c2gzvA_ not modelled 13.0 14 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 64 c2d8iA_ not modelled 12.9 15 PDB header:immune system, signaling protein Chain: A: PDB Molecule:t-cell lymphoma invasion and metastasis 1 PDBTitle: solution structure of the pdz domain of t-cell lymphoma2 invasion and metastasis 1 varian 65 c1zcdA_ not modelled 12.9 20 PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa 66 d1wgka_ not modelled 12.6 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 67 d1efna_ not modelled 12.5 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 68 c3cqtA_ not modelled 12.4 15 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn; PDBTitle: n53i v55l mutant of fyn sh3 domain 69 d1wi2a_ not modelled 12.4 11 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 70 d1shfa_ not modelled 12.3 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 71 c4a8aI_ not modelled 12.2 18 PDB header:hydrolase/hydrolase Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq; PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme 72 c2y0oA_ not modelled 12.1 23 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 73 c2k9xA_ not modelled 12.0 23 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 74 d1wi4a1 not modelled 11.9 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 75 d1k9sa_ not modelled 11.8 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 76 c1edzA_ not modelled 11.6 6 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase; PDBTitle: structure of the nad-dependent 5,10-2 methylenetetrahydrofolate dehydrogenase from saccharomyces3 cerevisiae 77 c2kncA_ not modelled 11.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 78 c2kfwA_ not modelled 11.2 25 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 79 c3elsA_ not modelled 11.1 26 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 80 d1qcfa1 not modelled 11.1 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 81 d2piea1 not modelled 10.9 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 82 d2d6fa1 not modelled 10.9 12 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 83 c1mhsA_ not modelled 10.8 21 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 84 d1lgpa_ not modelled 10.7 29 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 85 d1va8a1 not modelled 10.6 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 86 c2egeA_ not modelled 10.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein kiaa1666; PDBTitle: solution structure of the third sh3 domain from human2 kiaa1666 protein 87 c1w9qB_ not modelled 10.2 14 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide 88 d1viga_ not modelled 9.8 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 89 c2dgrA_ not modelled 9.8 24 PDB header:rna binding protein Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1; PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1 90 c2egaA_ not modelled 9.7 15 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the first sh3 domain from human2 kiaa0418 protein 91 d1ufxa_ not modelled 9.6 9 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 c3kw0D_ not modelled 9.5 25 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 93 d1g9oa_ not modelled 9.5 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 94 c2ejyA_ not modelled 9.5 10 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 95 d1rgwa_ not modelled 9.4 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 96 c1tuaA_ not modelled 9.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0754; PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix 97 c3npgD_ not modelled 9.2 11 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 98 c2dmoA_ not modelled 9.2 12 PDB header:signaling protein Chain: A: PDB Molecule:neutrophil cytosol factor 2; PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2) 99 d1rzxa_ not modelled 9.1 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain